View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7380_high_11 (Length: 444)
Name: NF7380_high_11
Description: NF7380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7380_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 9 - 428
Target Start/End: Complemental strand, 47859938 - 47859521
Alignment:
| Q |
9 |
gaagaatattacaacagtggcctcctcaatcttattagtataaaatgggtaattgtatacgtgccttgcatatgtaagtgttccaagtgttgtatataaa |
108 |
Q |
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| T |
47859938 |
gaagaatattacaacagtggcctcctcaatcttattagtataaaatgggtacttgtatacgtgccttgcatatgtaagtgttccaagtgttgtataaaaa |
47859839 |
T |
|
| Q |
109 |
attgctacgtagcaaccaaaataactatatatatatgcagattgcatatatagctggagttgtctaatcttatcttgttgattcctttctctattttcat |
208 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47859838 |
attgctacgtagcaaccaaaataactatatatat--gcagattgcatatatagctggagttgtctaatcttatcttgttgattcctttctctattttcat |
47859741 |
T |
|
| Q |
209 |
tgttttgtgcgtgtcctcttttccataagattttcaaagaacacaacataatcaccaccatttacattatagtaacaacctacagaagaaggatcgacca |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47859740 |
tgttttgtgcgtgtcctcttttccataagattttcaaagaacacaacataatcaccaccatttacattatagtaacaacctacagaagaaggatcgacca |
47859641 |
T |
|
| Q |
309 |
aaatgattcgaagaacagtgaactttccgagtttaaggaaattgcttcttcgtcctagttatctgtcttcgtccaaggtgatcaacgttttactttctca |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47859640 |
aaatgattcgaagaacagtgaactttccgagtttaaggaaattgcttcttcgtcctagttatctgtcttcgtccaaggtgatcaacgttttactttctca |
47859541 |
T |
|
| Q |
409 |
ttctttgttagtttaatttt |
428 |
Q |
| |
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|||||||||||||||||||| |
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| T |
47859540 |
ttctttgttagtttaatttt |
47859521 |
T |
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