View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7380_high_18 (Length: 404)
Name: NF7380_high_18
Description: NF7380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7380_high_18 |
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Alignment Details
Target: chr6 (Bit Score: 269; Significance: 1e-150; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 110 - 398
Target Start/End: Original strand, 6471779 - 6472067
Alignment:
| Q |
110 |
aaagggtaggttaattgtcattggtgttttgagaaattttcaagtattagcctatcgtgtaccctaaaacttgcctaagattgagtagtatccaatgctg |
209 |
Q |
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| T |
6471779 |
aaagggtaggttaattgtcattgatgttttgagaaattttcaagtattagcctatcgtgtaccctaaaacttgcctaagattgagtagtatctaatgctg |
6471878 |
T |
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| Q |
210 |
aaaatactaagaatctaacacacaaattgcactcaccacataccttaaaaaactataaaaccacaataataattaagacattcatcattatcctatcagc |
309 |
Q |
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| T |
6471879 |
aaaatactaagaatctaacacaaaaattgcactcaccacataccttaaaaaactataaaaccacaatcataattaagacattcatcattatcctatcagc |
6471978 |
T |
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| Q |
310 |
tgcaatgcctaacaacaaagagaatagttcctttctattcccacagatacaatccactgttcttcctgacccctccaaattcttctcac |
398 |
Q |
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| T |
6471979 |
tgcaatgcctaacaacaaagagaatagttcctttctattcccacagatacaatccactgttctccctgacccctccaaattcttctcac |
6472067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 6471512 - 6471608
Alignment:
| Q |
18 |
atatgtacgtgcctcaaaactcaaatcatatttgtttt-ttcttgtttatattaatctaacatcgatcatgtgcccttatcaatcgtgagtgcaaag |
113 |
Q |
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| T |
6471512 |
atatgtacgtgcctcaaaactcaaatcatatttgtttttttcttgtttatattaatctaacattgatcatatgcccttatcaatcgtgagtgcaaag |
6471608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 13034930 - 13035011
Alignment:
| Q |
120 |
ttaattgtcattggtgttttgagaaattttcaagtattagcctatcgtgtaccctaaaacttgcctaagattgagtagtatc |
201 |
Q |
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| T |
13034930 |
ttaattgtcattggtgttttgagaaatttttaagtattagcctatcgtgtaccgtaaaacttgcctaagattgagttgtatc |
13035011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 396
Target Start/End: Complemental strand, 6529386 - 6529352
Alignment:
| Q |
362 |
tccactgttcttcctgacccctccaaattcttctc |
396 |
Q |
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| T |
6529386 |
tccactgtccttcctgacccctccaaattcttctc |
6529352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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