View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7380_high_22 (Length: 370)

Name: NF7380_high_22
Description: NF7380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7380_high_22
NF7380_high_22
[»] chr8 (21 HSPs)
chr8 (5-354)||(4887688-4888027)
chr8 (5-354)||(4739001-4739340)
chr8 (1-220)||(4691349-4691568)
chr8 (1-232)||(4773964-4774195)
chr8 (5-218)||(4752149-4752362)
chr8 (11-218)||(4728282-4728489)
chr8 (11-232)||(4705541-4705762)
chr8 (16-219)||(4717708-4717911)
chr8 (5-216)||(4683327-4683538)
chr8 (24-214)||(4792222-4792412)
chr8 (12-229)||(4920865-4921082)
chr8 (22-213)||(4871792-4871983)
chr8 (5-213)||(10449356-10449564)
chr8 (44-219)||(4827305-4827480)
chr8 (5-219)||(21437341-21437555)
chr8 (16-211)||(4910813-4911008)
chr8 (44-213)||(4847386-4847555)
chr8 (5-213)||(4898490-4898698)
chr8 (44-213)||(4802107-4802276)
chr8 (304-338)||(4683605-4683639)
chr8 (304-338)||(4752431-4752465)


Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-106; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 5 - 354
Target Start/End: Complemental strand, 4888027 - 4887688
Alignment:
Q  5 tctaaggaaaggggttcaatgaaatcaaagcaacaaaagttcagttatactgaaattctcaaaattactgacaacttcaaaactattattggagaaggag 104  Q
    ||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  4888027 tctaaggaaaggggttcaatgaaatcaaaacatcaaaagttcagttacactgaaattctcaatattactgataacttcaaaactattattggagaaggag 4887928  T
Q  105 gatttggaaaagtttactttggcactctacaagatcaaactgaagttgccgttaagatgctttcaccatcatcaatgcaaggttataaggaatttcaatc 204  Q
    |||||||||||||||||||||||| |||||| ||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4887927 gatttggaaaagtttactttggcattctacaggatcaaactcaagtcgctgttaagatgctttcaccatcatcaatgcaaggttataaggaatttcaatc 4887828  T
Q  205 agaggttagacattgttttctagttaaagnnnnnnnngagaacaacatgatcaatataggttttagtgaagtaatatttaaaacgataatcgtgcttta- 303  Q
    |||||||||||||||| ||  |||||||          | ||||||||  ||||| |  | |||||| |||||||||||||||||| |||| ||| |||     
T  4887827 agaggttagacattgtattaaagttaaa----------aaaacaacatattcaattttag-tttagttaagtaatatttaaaacgagaatcctgcattat 4887739  T
Q  304 tttcacagttaactttgatagagataaaatttaaatattgatgcaggcaca 354  Q
    |||||  |||||||||||||||||||||||||||||||| |||||||||||    
T  4887738 tttcagtgttaactttgatagagataaaatttaaatattaatgcaggcaca 4887688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 5 - 354
Target Start/End: Original strand, 4739001 - 4739340
Alignment:
Q  5 tctaaggaaaggggttcaatgaaatcaaagcaacaaaagttcagttatactgaaattctcaaaattactgacaacttcaaaactattattggagaaggag 104  Q
    ||||||||||||||||||||||||||||| || ||||| ||||||||| ||||||||||||| |||||||| ||||||||||||| ||||||||||||||    
T  4739001 tctaaggaaaggggttcaatgaaatcaaaacaccaaaaattcagttattctgaaattctcaacattactgataacttcaaaactactattggagaaggag 4739100  T
Q  105 gatttggaaaagtttactttggcactctacaagatcaaactgaagttgccgttaagatgctttcaccatcatcaatgcaaggttataaggaatttcaatc 204  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| || |||||||  |||||||| ||||||||||||||||||||||||||||||||    
T  4739101 gatttggaaaagtttactttggcactctacaagatcaaactcaagtcgctgttaagagcctttcaccctcatcaatgcaaggttataaggaatttcaatc 4739200  T
Q  205 agaggttagacattgttttctagttaaagnnnnnnnngagaacaacatgatcaatataggttttagtgaagtaatatttaaaacgataatcgtgcttta- 303  Q
    ||||||||||||||   ||| || |||           | |||||||| |||||| |   ||||||| || ||||||||||||||| |||  ||| |||     
T  4739201 agaggttagacattacattcaagataa-----------aaaacaacataatcaatttttattttagttaattaatatttaaaacgagaattctgcattat 4739289  T
Q  304 tttcacagttaactttgatagagataaaatttaaatattgatgcaggcaca 354  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||| ||||    
T  4739290 tttcacagttaactttgatagggataaaatttaaatattaatgcagacaca 4739340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 4691349 - 4691568
Alignment:
Q  1 aaactctaaggaaaggggttcaatgaaatcaaagcaacaaaagttcagttatactgaaattctcaaaattactgacaacttcaaaactattattggagaa 100  Q
    |||||||||||||||||||||||||||||| || || || |  ||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||    
T  4691349 aaactctaaggaaaggggttcaatgaaatccaaacatcagagattcagttatactgaaattctcaacattactgataacttcaaaactactattggagaa 4691448  T
Q  101 ggaggatttggaaaagtttactttggcactctacaagatcaaactgaagttgccgttaagatgctttcaccatcatcaatgcaaggttataaggaatttc 200  Q
    |||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  4691449 ggaggatttggaaaagtttactttggcattctacaagatcaaactcaagttgctgttaagaggctttcaccatcatcaatgcaaggttataaggaatttc 4691548  T
Q  201 aatcagaggttagacattgt 220  Q
    ||||||||||||||||||||    
T  4691549 aatcagaggttagacattgt 4691568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 4774195 - 4773964
Alignment:
Q  1 aaactctaaggaaaggggttcaatgaaatcaaagcaacaaaagttcagttatactgaaattctcaaaattactgacaacttcaaaactattattggagaa 100  Q
    |||||||||| | |||| |||||  |||||||| || ||||  |||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||    
T  4774195 aaactctaagaatagggcttcaacaaaatcaaaacatcaaagattcagttatactgaaattgtcaatattactgataacttcaaaactattattggagaa 4774096  T
Q  101 ggaggatttggaaaagtttactttggcactctacaagatcaaactgaagttgccgttaagatgctttcaccatcatcaatgcaaggttataaggaatttc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||     
T  4774095 ggaggatttggaaaagtttactttggcactctacaagatcaaactgaagtcgctgttaagatgctttcaccatcatcaatgcaaggttataaggaatttg 4773996  T
Q  201 aatcagaggttagacattgttttctagttaaa 232  Q
    || ||||||||||||||||| ||| |||||||    
T  4773995 aagcagaggttagacattgtattcaagttaaa 4773964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 5 - 218
Target Start/End: Original strand, 4752149 - 4752362
Alignment:
Q  5 tctaaggaaaggggttcaatgaaatcaaagcaacaaaagttcagttatactgaaattctcaaaattactgacaacttcaaaactattattggagaaggag 104  Q
    ||||||||||||||||||||||||||||| || ||||| |||| |||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  4752149 tctaaggaaaggggttcaatgaaatcaaaacaccaaaatttcaattattctgaaattctcaatattactgataacttcaaaactattattggagaaggag 4752248  T
Q  105 gatttggaaaagtttactttggcactctacaagatcaaactgaagttgccgttaagatgctttcaccatcatcaatgcaaggttataaggaatttcaatc 204  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    ||||||| ||||||||||||||||||||||||||||||||||||||| ||    
T  4752249 gatttggaaaagtttactttggcattctacaagatcaaactgaagtcattgttaagaggctttcaccatcatcaatgcaaggttataaggaatttcattc 4752348  T
Q  205 agaggttagacatt 218  Q
     |||||||||||||    
T  4752349 ggaggttagacatt 4752362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 11 - 218
Target Start/End: Original strand, 4728282 - 4728489
Alignment:
Q  11 gaaaggggttcaatgaaatcaaagcaacaaaagttcagttatactgaaattctcaaaattactgacaacttcaaaactattattggagaaggaggatttg 110  Q
    |||||||||||||||||||| || || ||||| ||||||||| ||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||    
T  4728282 gaaaggggttcaatgaaatccaaacaccaaaaattcagttattctgaaattctcaacattactgataacttcaaaactgttattggagaaggaggatttg 4728381  T
Q  111 gaaaagtttactttggcactctacaagatcaaactgaagttgccgttaagatgctttcaccatcatcaatgcaaggttataaggaatttcaatcagaggt 210  Q
    |||||||||||||||||| |||||||||||||||| |||| || ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  4728382 gaaaagtttactttggcattctacaagatcaaactcaagtcgcggttaagaggctttcaccatcatcaatgcaaggttataaggagtttcaatcagaggt 4728481  T
Q  211 tagacatt 218  Q
    ||||||||    
T  4728482 tagacatt 4728489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 11 - 232
Target Start/End: Original strand, 4705541 - 4705762
Alignment:
Q  11 gaaaggggttcaatgaaatcaaagcaacaaaagttcagttatactgaaattctcaaaattactgacaacttcaaaactattattggagaaggaggatttg 110  Q
    ||||||||||||||||||||||| || ||||| |||| |||||||||||||||||| |||||||| |||||| |||||||||||||||||||||| ||||    
T  4705541 gaaaggggttcaatgaaatcaaaacaccaaaaattcacttatactgaaattctcaatattactgataacttccaaactattattggagaaggaggttttg 4705640  T
Q  111 gaaaagtttactttggcactctacaagatcaaactgaagttgccgttaagatgctttcaccatcatcaatgcaaggttataaggaatttcaatcagaggt 210  Q
    ||| |||||| ||||||| |||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4705641 gaacagtttattttggcattctacaagatcaaactcaagtcgctgttaagatgctttcaccatcatcaatgcaaggttataaggaatttcaatcagaggt 4705740  T
Q  211 tagacattgttttctagttaaa 232  Q
    | ||||| |  |||||||||||    
T  4705741 tggacatagcattctagttaaa 4705762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 16 - 219
Target Start/End: Original strand, 4717708 - 4717911
Alignment:
Q  16 gggttcaatgaaatcaaagcaacaaaagttcagttatactgaaattctcaaaattactgacaacttcaaaactattattggagaaggaggatttggaaaa 115  Q
    |||||||||||||||||| || ||||| ||||||||||| |||||||| |||||||| || |||||||||||||| ||||||||||||||||||||||||    
T  4717708 gggttcaatgaaatcaaaacaccaaaaattcagttataccgaaattcttaaaattacggataacttcaaaactatcattggagaaggaggatttggaaaa 4717807  T
Q  116 gtttactttggcactctacaagatcaaactgaagttgccgttaagatgctttcaccatcatcaatgcaaggttataaggaatttcaatcagaggttagac 215  Q
    ||||||||||||| |||| ||||||||||| |||| || ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  4717808 gtttactttggcattctaaaagatcaaactcaagtcgctgttaagaggctttcaccatcatcaaagcaaggttataaggaatttcaatcagaggttagac 4717907  T
Q  216 attg 219  Q
    ||||    
T  4717908 attg 4717911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 5 - 216
Target Start/End: Original strand, 4683327 - 4683538
Alignment:
Q  5 tctaaggaaaggggttcaatgaaatcaaagcaacaaaagttcagttatactgaaattctcaaaattactgacaacttcaaaactattattggagaaggag 104  Q
    |||||| ||||| |||||||||||||||| || ||||| |||||||| ||||||||| |||| ||||| || ||||||||||||||||||||||||||||    
T  4683327 tctaagaaaaggagttcaatgaaatcaaaacatcaaaaattcagttacactgaaattgtcaatattaccgataacttcaaaactattattggagaaggag 4683426  T
Q  105 gatttggaaaagtttactttggcactctacaagatcaaactgaagttgccgttaagatgctttcaccatcatcaatgcaaggttataaggaatttcaatc 204  Q
    |||||||||||||||||||||||||||||||||| |||||| |||| || ||||||  ||||||||||||||| |||||||||||||| |||||||||||    
T  4683427 gatttggaaaagtttactttggcactctacaagaccaaactcaagtcgctgttaagcggctttcaccatcatcgatgcaaggttataatgaatttcaatc 4683526  T
Q  205 agaggttagaca 216  Q
    ||||||||||||    
T  4683527 agaggttagaca 4683538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 24 - 214
Target Start/End: Complemental strand, 4792412 - 4792222
Alignment:
Q  24 tgaaatcaaagcaacaaaagttcagttatactgaaattctcaaaattactgacaacttcaaaactattattggagaaggaggatttggaaaagtttactt 123  Q
    |||||||||| || ||||  ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||  |    
T  4792412 tgaaatcaaaacatcaaagattcagttatactgaaattctcaatattactgataacttcaaaactattattggagaaggaggatttggaaaagtttatct 4792313  T
Q  124 tggcactctacaagatcaaactgaagttgccgttaagatgctttcaccatcatcaatgcaaggttataaggaatttcaatcagaggttaga 214  Q
    ||||||||| |||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  4792312 tggcactcttcaagatcaaactcaagttgctattaagatgctttcaccatcatcaatgcaaggttataaagaatttcaatcagaggttaga 4792222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 12 - 229
Target Start/End: Complemental strand, 4921082 - 4920865
Alignment:
Q  12 aaaggggttcaatgaaatcaaagcaacaaaagttcagttatactgaaattctcaaaattactgacaacttcaaaactattattggagaaggaggatttgg 111  Q
    ||||||||||||||| |||||||||  |||  ||||||||||||||||||||||| |||||||| ||||||||||| ||| ||||||||||||| |||||    
T  4921082 aaaggggttcaatgatatcaaagcatgaaagattcagttatactgaaattctcaatattactgataacttcaaaaccattcttggagaaggaggttttgg 4920983  T
Q  112 aaaagtttactttggcactctacaagatcaaactgaagttgccgttaagatgctttcaccatcatcaatgcaaggttataaggaatttcaatcagaggtt 211  Q
    |||||||||||| |||| |||||||||||||||| |||| || ||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||    
T  4920982 aaaagtttacttcggcattctacaagatcaaactcaagtagctgttaagaggctttcgctatcatcaatgcaaggttataaggaatttcaatcagaggtt 4920883  T
Q  212 agacattgttttctagtt 229  Q
    || |||||| ||| ||||    
T  4920882 agccattgtattcaagtt 4920865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 22 - 213
Target Start/End: Complemental strand, 4871983 - 4871792
Alignment:
Q  22 aatgaaatcaaagcaacaaaagttcagttatactgaaattctcaaaattactgacaacttcaaaactattattggagaaggaggatttggaaaagtttac 121  Q
    ||||||||||||||| ||||  |||||||| || ||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  4871983 aatgaaatcaaagcatcaaatattcagttacaccgaaattctcaatattactgataacttcaaaacaattattggagaaggaggatttggaaaagtttac 4871884  T
Q  122 tttggcactctacaagatcaaactgaagttgccgttaagatgctttcaccatcatcaatgcaaggttataaggaatttcaatcagaggttag 213  Q
     |||||| | |||||||||  ||| ||||||| ||||| || |||||| ||||||||| |||||||||||||||||||||||| ||||||||    
T  4871883 attggcattttacaagatctcactcaagttgctgttaaaattctttcaacatcatcaaagcaaggttataaggaatttcaatctgaggttag 4871792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 5 - 213
Target Start/End: Original strand, 10449356 - 10449564
Alignment:
Q  5 tctaaggaaaggggttcaatgaaatcaaagcaacaaaagttcagttatactgaaattctcaaaattactgacaacttcaaaactattattggagaaggag 104  Q
    |||||| ||| || |||||||||||||||||| ||||  |||||||| |||||||||||||| |||||||| ||| ||||||||||||||||||||||||    
T  10449356 tctaagaaaaaggattcaatgaaatcaaagcatcaaacattcagttacactgaaattctcaatattactgataacctcaaaactattattggagaaggag 10449455  T
Q  105 gatttggaaaagtttactttggcactctacaagatcaaactgaagttgccgttaagatgctttcaccatcatcaatgcaaggttataaggaatttcaatc 204  Q
    ||||||||||||||||| |||||| | |||||||||| ||  |||| || || ||  | ||||||  |||||||| ||||||||||||||||||||||||    
T  10449456 gatttggaaaagtttacattggcattttacaagatcagacccaagtagctgtaaaatttctttcaaaatcatcaaagcaaggttataaggaatttcaatc 10449555  T
Q  205 agaggttag 213  Q
     ||||||||    
T  10449556 tgaggttag 10449564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 44 - 219
Target Start/End: Complemental strand, 4827480 - 4827305
Alignment:
Q  44 ttcagttatactgaaattctcaaaattactgacaacttcaaaactattattggagaaggaggatttggaaaagtttactttggcactctacaagatcaaa 143  Q
    |||||||| |||||||||||||| || ||| | ||||||||||||| ||||||||||||||||||||||||||||||| |||| | | ||||| |  |||    
T  4827480 ttcagttacactgaaattctcaatatcactaataacttcaaaactactattggagaaggaggatttggaaaagtttaccttggaattttacaaaacaaaa 4827381  T
Q  144 ctgaagttgccgttaagatgctttcaccatcatcaatgcaaggttataaggaatttcaatcagaggttagacattg 219  Q
    || ||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||    
T  4827380 ctcaagttgctgttaagatgctttcaccatcctcaatgcaaggttataaagaatttcaatcagaggttagaaattg 4827305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 5 - 219
Target Start/End: Complemental strand, 21437555 - 21437341
Alignment:
Q  5 tctaaggaaaggggttcaatgaaatcaaagcaacaaaagttcagttatactgaaattctcaaaattactgacaacttcaaaactattattggagaaggag 104  Q
    |||||| ||||| |||  |||||||||||||| ||||  |||||||| |||||||||||||| |||||||| |||||||||||  |||||||||||||||    
T  21437555 tctaagaaaaggcgttggatgaaatcaaagcatcaaacattcagttacactgaaattctcaatattactgataacttcaaaacagttattggagaaggag 21437456  T
Q  105 gatttggaaaagtttactttggcactctacaagatcaaactgaagttgccgttaagatgctttcaccatcatcaatgcaaggttataaggaatttcaatc 204  Q
    ||||||||||||||||| |||||| | |||| ||||  ||| |||| || || || |||||||||  |||||||| ||||||||||||||||||||||||    
T  21437455 gatttggaaaagtttacattggcattttacatgatcgcactcaagtagcggtaaaaatgctttcaaaatcatcaaagcaaggttataaggaatttcaatc 21437356  T
Q  205 agaggttagacattg 219  Q
     |||||||| |||||    
T  21437355 tgaggttagtcattg 21437341  T

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Target: chr8; HSP #16
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 16 - 211
Target Start/End: Complemental strand, 4911008 - 4910813
Alignment:
Q  16 gggttcaatgaaatcaaagcaacaaaagttcagttatactgaaattctcaaaattactgacaacttcaaaactattattggagaaggaggatttggaaaa 115  Q
    ||||||||||||||||||||| |||| |||||| ||  ||||||||||||| |||||||| ||||| |||||| ||||||||||||||||||||||||||    
T  4911008 gggttcaatgaaatcaaagcatcaaatgttcagctactctgaaattctcaatattactgataactttaaaactgttattggagaaggaggatttggaaaa 4910909  T
Q  116 gtttactttggcactctacaagatcaaactgaagttgccgttaagatgctttcaccatcatcaatgcaaggttataaggaatttcaatcagaggtt 211  Q
    |||||| |||| | | |||||||||| ||| |||| || || || || |||||| |||||||||  |||||||| |||||||||||||||||||||    
T  4910908 gtttacgttggaattttacaagatcacactcaagtagctgtaaaaattctttcaacatcatcaaaccaaggttacaaggaatttcaatcagaggtt 4910813  T

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Target: chr8; HSP #17
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 44 - 213
Target Start/End: Complemental strand, 4847555 - 4847386
Alignment:
Q  44 ttcagttatactgaaattctcaaaattactgacaacttcaaaactattattggagaaggaggatttggaaaagtttactttggcactctacaagatcaaa 143  Q
    |||||||| | |||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||| | |||||||||| |    
T  4847555 ttcagttacaatgaaattctcaatattactgataacttcaaaactataattggagaaggaggatttggaaaagtttacattggcattttacaagatcaca 4847456  T
Q  144 ctgaagttgccgttaagatgctttcaccatcatcaatgcaaggttataaggaatttcaatcagaggttag 213  Q
    || |||| || || || ||||||||| | ||||| | |||||||||||||||||||||||||||||||||    
T  4847455 ctcaagtagctgtaaaaatgctttcaacttcatcgaagcaaggttataaggaatttcaatcagaggttag 4847386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 5 - 213
Target Start/End: Complemental strand, 4898698 - 4898490
Alignment:
Q  5 tctaaggaaaggggttcaatgaaatcaaagcaacaaaagttcagttatactgaaattctcaaaattactgacaacttcaaaactattattggagaaggag 104  Q
    |||||| ||||| ||||||||||||||||| | ||||  ||||||||  ||||||||||||| |||||  | |||||||||||||||| |||||||||||    
T  4898698 tctaagaaaaggcgttcaatgaaatcaaagaatcaaacattcagttacgctgaaattctcaatattacgaataacttcaaaactattactggagaaggag 4898599  T
Q  105 gatttggaaaagtttactttggcactctacaagatcaaactgaagttgccgttaagatgctttcaccatcatcaatgcaaggttataaggaatttcaatc 204  Q
    ||||||||||||||||| |||||  | |||||||||| ||| |||| || || || |||||||||  |||||||| ||||||||||||| ||||||||||    
T  4898598 gatttggaaaagtttacattggctttttacaagatcacactcaagtggctgtaaaaatgctttcaaaatcatcaaagcaaggttataagtaatttcaatc 4898499  T
Q  205 agaggttag 213  Q
     ||||||||    
T  4898498 tgaggttag 4898490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 44 - 213
Target Start/End: Complemental strand, 4802276 - 4802107
Alignment:
Q  44 ttcagttatactgaaattctcaaaattactgacaacttcaaaactattattggagaaggaggatttggaaaagtttactttggcactctacaagatcaaa 143  Q
    |||||||| | |||||||||||| |||||||| |||||||||||||| ||||||||||||||||| |||||||||||| | |||| | |||||||||  |    
T  4802276 ttcagttacaatgaaattctcaatattactgataacttcaaaactataattggagaaggaggattcggaaaagtttacatcggcattttacaagatcgca 4802177  T
Q  144 ctgaagttgccgttaagatgctttcaccatcatcaatgcaaggttataaggaatttcaatcagaggttag 213  Q
    || || | || || || ||||||||| | ||||| | |||||| ||||||||||||||||||||||||||    
T  4802176 ctcaattagctgtaaaaatgctttcaacttcatcgaagcaagggtataaggaatttcaatcagaggttag 4802107  T

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Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 338
Target Start/End: Original strand, 4683605 - 4683639
Alignment:
Q  304 tttcacagttaactttgatagagataaaatttaaa 338  Q
    ||||||||||||||||| |||||||||||||||||    
T  4683605 tttcacagttaactttggtagagataaaatttaaa 4683639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 338
Target Start/End: Original strand, 4752431 - 4752465
Alignment:
Q  304 tttcacagttaactttgatagagataaaatttaaa 338  Q
    ||||||||||||||||| |||||||||||||||||    
T  4752431 tttcacagttaactttggtagagataaaatttaaa 4752465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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