View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7380_high_23 (Length: 369)
Name: NF7380_high_23
Description: NF7380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7380_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 8 - 355
Target Start/End: Original strand, 39556774 - 39557116
Alignment:
| Q |
8 |
ttggtgttgtgtaatataattatttaacatagttctgatttcttgttgcaggatatggaatggaatgcagtggattcatgaaaggtaacacattctcttt |
107 |
Q |
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| T |
39556774 |
ttggtgttgtgtaatataattatttaacatagttctgatttcttgttgcaggatatggaatggaatgcagtggattcatgaaaggtaacacattctcttt |
39556873 |
T |
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| Q |
108 |
ctgttgttaattttgctttccacaaattgttacatgtatatggttccactaactagttacgttgccttgatgaatgatgaacaaaatcaacctctaaaat |
207 |
Q |
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| T |
39556874 |
ctgttgttaattttgctttccacaaattgttacatgtatatggttccactaactagtt-----gccttgatgaatgatgaacaaaatcaacctctaaaat |
39556968 |
T |
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| Q |
208 |
gattttaataacgttatcttagtagtgtttttcatcttaattaatatcccattctagttatgattttatttacttcacatagaatggtacattgctacat |
307 |
Q |
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| T |
39556969 |
tattttaataacgttatcttagtagtgtttttcatcttaattaatatcccattctagttatgattttatttacttcacatagaatggtacattggtacat |
39557068 |
T |
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| Q |
308 |
atatcaacgcaacatcacttgaaatgaaatagttttgtcgccactttt |
355 |
Q |
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| T |
39557069 |
atatcaacgcaacatcacttgaaatgaaatagttttgtcgccactttt |
39557116 |
T |
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