View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7380_high_3 (Length: 564)
Name: NF7380_high_3
Description: NF7380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7380_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 1 - 545
Target Start/End: Complemental strand, 38027449 - 38026921
Alignment:
| Q |
1 |
aagaacttgcacatcttcacatgggcatgacttaacatccttgtataagatgtataatcctctacctattttacataagaaacaaaaattaatcggtaat |
100 |
Q |
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| T |
38027449 |
aagaacttgcacatcttcacatgggcatgacttaacatccttgtataagatgtataatcctctacctattttacataagaaacaaaaattaatcggtaat |
38027350 |
T |
|
| Q |
101 |
aattactatatcatcattgttttgtataaagtaggagtatataaatatatgaacatgaaattatatgaattgaacaagaatggtcaaagaaaaggatcat |
200 |
Q |
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| T |
38027349 |
aattactatatcatcattg----------------agtatataaatatatgaacatgaaattatatgaattgaacaagaatggtcaaagaaaaggatcat |
38027266 |
T |
|
| Q |
201 |
aatgcaaatactagcaaaatgaataaaagaaatgcaatggaattaatgtgactagaattgaaattataatgctaacttacgttttttattggttgaatgg |
300 |
Q |
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| T |
38027265 |
aatgcaaatactagcaaaatgaataaaagaaatgcaatggaattaatgtgactagaatttaaattataatgctaacttacgtcttttattggttgaatgg |
38027166 |
T |
|
| Q |
301 |
atccgaagccaaagcttcttcaatgggcagagtagggattgaagccaccccattttggtgaagtgctactacttttggctcatagtagttggtgaaaaat |
400 |
Q |
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| T |
38027165 |
atccgaagccaaagcttcttcaatgggcagagtagggattgaagccaccccattttggtgaagtactactacttttggctcatagtagttggtgaaaaat |
38027066 |
T |
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| Q |
401 |
tggacaagaatgagaaatgtttataaagagagatcgcttggaagttggaacttacacacttgaatagtgatgcttctcatgtatcttaccaaatttattt |
500 |
Q |
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| T |
38027065 |
tggacaagaatgagaaatgtttataaagagagattgcttggaagttggaacttacacacttgaatagtgatgcttctcatgtatcttaccaaatttattt |
38026966 |
T |
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| Q |
501 |
ttaaattcaatcatgcaagaaaaacatggccactctcggtgctat |
545 |
Q |
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| T |
38026965 |
ttaaattcaatcatgcaagaaaaacatggccactctcggtgctat |
38026921 |
T |
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