View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7380_high_30 (Length: 326)

Name: NF7380_high_30
Description: NF7380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7380_high_30
NF7380_high_30
[»] chr5 (1 HSPs)
chr5 (27-326)||(4996849-4997148)


Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 27 - 326
Target Start/End: Original strand, 4996849 - 4997148
Alignment:
Q  27 aaaaattcacaacatgaaaaaactcattttcattcttctcttttcactactatgttcaaatggaaccaccttttcactctcaagagactatgaaattctt 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4996849 aaaaattcacaacatgaaaaaactcattttcattcttctcttttcactagtatgttcaaatggaaccaccttttcactctcaagagactatgaaattctt 4996948  T
Q  127 cttcatgtaaagaacacacaaattgatgacaaaaacaaaagtctcaatgattggcttccaaacacagatcataatccttgtaactggagaggcataacct 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4996949 cttcatgtaaagaacacacaaattgatgacaaaaacaaaagtctcaatgattggcttccaaacacagatcataatccttgtaactggagaggcataacct 4997048  T
Q  227 gcgattcgtggaataaatccgttgtatcaatcgacctcacagaaaccggtatttatggtgattttccatctaatttctgtcatcttccaacactccaaaa 326  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  4997049 gcgattcgcggaataaatccgttgtatcaatcgacctcacagaaaccggtatttatggtgattttccatctaatttctgtcatattccaacactccaaaa 4997148  T

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