View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7380_high_32 (Length: 321)
Name: NF7380_high_32
Description: NF7380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7380_high_32 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 17 - 306
Target Start/End: Original strand, 41241563 - 41241848
Alignment:
| Q |
17 |
gtttttgggtccttcccattatgtttaggttaatttgtttatttttgttgttgactgtgtattcgtcaaggttgtactccgggggacttaataggtaggt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
41241563 |
gtttttgggtccttcccattatgtttaggtt----tgcttatttttgttgttgactgtgtattcgtcaaggttgtactccgggggactgaataggtacgt |
41241658 |
T |
|
| Q |
117 |
acctgattcatgctcatgatacttggatctatgttgttcccagttcaagtttcaagggttcatattccacataggtgtcgccttaatatctatattggtc |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
41241659 |
acctgattcatgctcatgatacttggatctatgttgttcccagttcaagtttcaagggttcatattctacataggtgtcgccttaatatctatattggtc |
41241758 |
T |
|
| Q |
217 |
attgtgattgatcaggctcgtttgatatcctcatcatcatcttctcaattcttatgacccttcccatgtaataattactatcaagtgtga |
306 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41241759 |
attgtgattgatcaggcttgtttgatatcctcctcatcatcttctcaattcttatgacccttcccatgtaataattactatcaagtgtga |
41241848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 231
Target Start/End: Complemental strand, 41246072 - 41246003
Alignment:
| Q |
162 |
caagtttcaagggttcatattccacataggtgtcgccttaatatctatattggtcattgtgattgatcag |
231 |
Q |
| |
|
||||||||||||||||| || ||||| || |||||||||||| || |||||||||||||||||| |||| |
|
|
| T |
41246072 |
caagtttcaagggttcaggtttcacatcggcgtcgccttaatacctctattggtcattgtgattgctcag |
41246003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University