View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7380_high_39 (Length: 253)
Name: NF7380_high_39
Description: NF7380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7380_high_39 |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 55 - 245
Target Start/End: Complemental strand, 14771841 - 14771652
Alignment:
| Q |
55 |
cagaaagaatggatgcagcctgcttttggctaagctacattctcttttaacaataaaggcnnnnnnnnacgccatctattctagagtttagcacaaatcc |
154 |
Q |
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| T |
14771841 |
cagaaagaatggatgcagcctgcttttggctaagctacattctcttttaacaataaaggcttttttt-acgccatctattctagagtttagcacaaaccc |
14771743 |
T |
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| Q |
155 |
ccatagcagtatcgtgaaaaattggattggattgctgccgattctcattatagaggaaaaaataattaagaattatgttgtgattgatgat |
245 |
Q |
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| T |
14771742 |
ccatagcagtatcgtgaaaaattggattggattgctgccgattctcattatagaggaaaaaataattaagaattatgttgtgattgatgat |
14771652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 14771868 - 14771824
Alignment:
| Q |
13 |
aatctaaacagtgcaaaagcatctacccagaaagaatggatgcag |
57 |
Q |
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| T |
14771868 |
aatctaaacagtgcaaaagtatctacccagaaagaatggatgcag |
14771824 |
T |
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