View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7380_high_41 (Length: 248)
Name: NF7380_high_41
Description: NF7380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7380_high_41 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 35708046 - 35707808
Alignment:
| Q |
1 |
ttcacgcgcaactttattgatttccatggtatatctcagatgtggatgcaataatctaaaaattggatgcatggaactgagttgtctgtgtgttgcaatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35708046 |
ttcacgcgcaactttattgatttccatggtatatctcagatgtggatgcaataatctaaaaattggatgcatggaactgagttgtctgtgtgttgcaatt |
35707947 |
T |
|
| Q |
101 |
ataataggttcgacaacacaatgagttcttagcctgcaaacagaattaacatattactaagttagtactagttataagcttgacataacatctcatacaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35707946 |
ataataggttcgacaacacaatgagttcttagcctgcaaacagaattaacatattactaagttagtactagttataagcttgacataacatctcatacaa |
35707847 |
T |
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| Q |
201 |
cctaattggtactcaccaatggcttataagttgatgatg |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
35707846 |
cctaattggtactcaccaatggcttataagttgatgatg |
35707808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 35724006 - 35723768
Alignment:
| Q |
1 |
ttcacgcgcaactttattgatttccatggtatatctcagatgtggatgcaataatctaaaaattggatgcatggaactgagttgtctgtgtgttgcaatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
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| T |
35724006 |
ttcacgcgcaactttattgatttccatggtatatctcagatgtggatgcaataatctaaatattggatgtatggaactgagttgtctgtgtgttgcaatt |
35723907 |
T |
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| Q |
101 |
ataataggttcgacaacacaatgagttcttagcctgcaaacagaattaacatattactaagttagtactagttataagcttgacataacatctcatacaa |
200 |
Q |
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| T |
35723906 |
ataataggttcgacaacacaatgagttcttagcctgcaaacagaattaacatattactaagttagtactagttataagcttgacataacatctcatacaa |
35723807 |
T |
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| Q |
201 |
cctaattggtactcaccaatggcttataagttgatgatg |
239 |
Q |
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| T |
35723806 |
cctaattggtactcaccaatggcttataagttcatgatg |
35723768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 12 - 134
Target Start/End: Original strand, 22512703 - 22512825
Alignment:
| Q |
12 |
ctttattgatttccatggtatatctcagatgtggatgcaataatctaaaaattggatgcatggaactgagttgtctgtgtgttgcaattataataggttc |
111 |
Q |
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|||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| || | ||||||||||||||||| |
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| T |
22512703 |
ctttattgatctccatggtatacctcagatgtggatgcaataatctaaaaattagatgcatggaactgagttgtctatgcatggcaattataataggttc |
22512802 |
T |
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| Q |
112 |
gacaacacaatgagttcttagcc |
134 |
Q |
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|||||||||||||||| |||||| |
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| T |
22512803 |
gacaacacaatgagtttttagcc |
22512825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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