View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7380_high_47 (Length: 239)

Name: NF7380_high_47
Description: NF7380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7380_high_47
NF7380_high_47
[»] chr3 (19 HSPs)
chr3 (60-226)||(49350153-49350318)
chr3 (60-132)||(49349676-49349748)
chr3 (61-107)||(54308454-54308500)
chr3 (60-108)||(20807937-20807985)
chr3 (60-109)||(47571196-47571245)
chr3 (57-102)||(54753574-54753619)
chr3 (60-108)||(4706956-4707004)
chr3 (60-132)||(14746878-14746949)
chr3 (60-108)||(20808607-20808655)
chr3 (61-108)||(9830573-9830620)
chr3 (60-107)||(15287567-15287614)
chr3 (62-108)||(47677523-47677569)
chr3 (62-108)||(48626114-48626160)
chr3 (58-160)||(53242664-53242766)
chr3 (60-109)||(47571938-47571987)
chr3 (57-98)||(47808359-47808400)
chr3 (59-104)||(53344745-53344790)
chr3 (59-99)||(16076209-16076249)
chr3 (60-108)||(53343856-53343904)
[»] chr2 (9 HSPs)
chr2 (64-226)||(30514424-30514586)
chr2 (57-107)||(20606922-20606972)
chr2 (58-107)||(10173934-10173983)
chr2 (58-104)||(127739-127785)
chr2 (57-106)||(6873519-6873568)
chr2 (60-107)||(127033-127080)
chr2 (65-98)||(44297424-44297457)
chr2 (59-107)||(9157014-9157062)
chr2 (60-160)||(13265543-13265641)
[»] chr1 (11 HSPs)
chr1 (58-158)||(26240821-26240921)
chr1 (58-109)||(26240112-26240163)
chr1 (60-104)||(16449555-16449599)
chr1 (60-104)||(16459129-16459173)
chr1 (59-113)||(24848421-24848475)
chr1 (60-102)||(27746164-27746206)
chr1 (60-113)||(24847783-24847836)
chr1 (57-98)||(27745553-27745594)
chr1 (59-107)||(2261544-2261592)
chr1 (58-104)||(21257921-21257967)
chr1 (60-116)||(51547592-51547648)
[»] chr7 (19 HSPs)
chr7 (60-148)||(767136-767224)
chr7 (58-162)||(24873749-24873853)
chr7 (60-107)||(30581267-30581314)
chr7 (19-58)||(40485219-40485258)
chr7 (55-109)||(41358970-41359024)
chr7 (65-107)||(36611556-36611598)
chr7 (59-160)||(46491636-46491737)
chr7 (60-96)||(17114145-17114181)
chr7 (58-110)||(28007155-28007207)
chr7 (60-160)||(36611442-36611542)
chr7 (60-107)||(3314955-3315002)
chr7 (60-107)||(41965778-41965825)
chr7 (58-96)||(24874590-24874628)
chr7 (69-107)||(36611739-36611777)
chr7 (54-96)||(41965106-41965148)
chr7 (60-98)||(42818563-42818601)
chr7 (62-135)||(10590941-10591014)
chr7 (62-98)||(44876944-44876980)
chr7 (59-99)||(46491009-46491049)
[»] chr4 (17 HSPs)
chr4 (60-160)||(52534990-52535090)
chr4 (57-159)||(34941499-34941601)
chr4 (60-148)||(51386456-51386544)
chr4 (59-158)||(24666802-24666901)
chr4 (60-109)||(24666129-24666178)
chr4 (59-107)||(14527577-14527625)
chr4 (64-160)||(18363601-18363697)
chr4 (64-160)||(36599231-36599327)
chr4 (62-107)||(53778416-53778461)
chr4 (60-132)||(25055109-25055181)
chr4 (58-97)||(26354243-26354282)
chr4 (62-148)||(25056253-25056339)
chr4 (60-114)||(34451431-34451485)
chr4 (60-98)||(42792775-42792813)
chr4 (62-160)||(47764049-47764147)
chr4 (60-97)||(52129421-52129458)
chr4 (58-98)||(34450813-34450853)
[»] chr8 (9 HSPs)
chr8 (59-148)||(26847096-26847185)
chr8 (60-107)||(4402288-4402335)
chr8 (61-128)||(22632323-22632390)
chr8 (58-109)||(22632967-22633018)
chr8 (59-109)||(42094008-42094058)
chr8 (60-108)||(16911046-16911094)
chr8 (65-107)||(36180692-36180734)
chr8 (59-104)||(202576-202621)
chr8 (59-104)||(317413-317458)
[»] chr5 (14 HSPs)
chr5 (60-114)||(23253480-23253534)
chr5 (60-160)||(24565573-24565673)
chr5 (60-160)||(24606609-24606709)
chr5 (60-107)||(29595595-29595642)
chr5 (60-107)||(39937907-39937954)
chr5 (60-98)||(27345929-27345967)
chr5 (59-104)||(2029051-2029096)
chr5 (58-99)||(39936253-39936294)
chr5 (60-128)||(23257319-23257387)
chr5 (60-98)||(40372170-40372208)
chr5 (58-107)||(39466883-39466932)
chr5 (59-95)||(5346295-5346331)
chr5 (58-90)||(29594904-29594936)
chr5 (59-107)||(35524121-35524169)
[»] scaffold0627 (1 HSPs)
scaffold0627 (58-98)||(6462-6502)
[»] chr6 (2 HSPs)
chr6 (57-102)||(5312238-5312283)
chr6 (60-109)||(16718993-16719042)


Alignment Details
Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 60 - 226
Target Start/End: Complemental strand, 49350318 - 49350153
Alignment:
Q  60 ggtggattctagggtgagggttcatttaagtccctcaccagtgaaccatgtaaaatacaccgttagattaaatcaatagttcagatttaatgaaaat-aa 158  Q
    |||||||||||||||||||||||| ||||||||||| || ||||||||| |||||||||||| ||||||||||||||  |||||||| ||||||||| ||    
T  49350318 ggtggattctagggtgagggttcaattaagtccctcgccggtgaaccatataaaatacaccgctagattaaatcaatgtttcagattaaatgaaaataaa 49350219  T
Q  159 aaggtgatcatatactcatttttacacacaatattctccctctctcttctccatctgtgtttcttctc 226  Q
    |||| || ||||||| |||||||||| ||||||||||||  ||||||||||||| || ||||||||||    
T  49350218 aaggggaacatatacacatttttacaaacaatattctcc--ctctcttctccatatgcgtttcttctc 49350153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 60 - 132
Target Start/End: Original strand, 49349676 - 49349748
Alignment:
Q  60 ggtggattctagggtgagggttcatttaagtccctcaccagtgaaccatgtaaaatacaccgttagattaaat 132  Q
    |||||||||||||||||||| ||| |||||||||||||| ||||| ||||||||||| | | |||||||||||    
T  49349676 ggtggattctagggtgagggatcaattaagtccctcaccggtgaagcatgtaaaatatatcattagattaaat 49349748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 61 - 107
Target Start/End: Original strand, 54308454 - 54308500
Alignment:
Q  61 gtggattctagggtgagggttcatttaagtccctcaccagtgaacca 107  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||    
T  54308454 gtggattctagggtgagggttcaattaagtccctcaccggtgaacca 54308500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 108
Target Start/End: Original strand, 20807937 - 20807985
Alignment:
Q  60 ggtggattctagggtgagggttcatttaagtccctcaccagtgaaccat 108  Q
    |||||||||||||||||||||||| |||||||||||||| ||| |||||    
T  20807937 ggtggattctagggtgagggttcaattaagtccctcaccggtgtaccat 20807985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 109
Target Start/End: Original strand, 47571196 - 47571245
Alignment:
Q  60 ggtggattctagggtgagggttcatttaagtccctcaccagtgaaccatg 109  Q
    |||||||||||||||||||| ||| |||||||||||||| ||||| ||||    
T  47571196 ggtggattctagggtgagggatcaattaagtccctcaccggtgaagcatg 47571245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 54753574 - 54753619
Alignment:
Q  57 ataggtggattctagggtgagggttcatttaagtccctcaccagtg 102  Q
    ||||||| |||||| |||||||||||| ||||||||||||||||||    
T  54753574 ataggtgaattctacggtgagggttcaattaagtccctcaccagtg 54753619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 108
Target Start/End: Complemental strand, 4707004 - 4706956
Alignment:
Q  60 ggtggattctagggtgagggttcatttaagtccctcaccagtgaaccat 108  Q
    |||||||||||||||||||||||  |||||||||||||| ||| |||||    
T  4707004 ggtggattctagggtgagggttctattaagtccctcaccggtgtaccat 4706956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 132
Target Start/End: Complemental strand, 14746949 - 14746878
Alignment:
Q  60 ggtggattctagggtgagggttcatttaagtccctcaccagtgaaccatgtaaaatacaccgttagattaaat 132  Q
    ||||||||||||| ||||||| || |||||||||||| | ||| |||| | |||| |||||||||||||||||    
T  14746949 ggtggattctagg-tgagggtccaattaagtccctcatcggtggaccacgaaaaaaacaccgttagattaaat 14746878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 108
Target Start/End: Complemental strand, 20808655 - 20808607
Alignment:
Q  60 ggtggattctagggtgagggttcatttaagtccctcaccagtgaaccat 108  Q
    ||||||||||||||||||||||||  ||||||||||||| ||| |||||    
T  20808655 ggtggattctagggtgagggttcaagtaagtccctcaccggtgtaccat 20808607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 108
Target Start/End: Original strand, 9830573 - 9830620
Alignment:
Q  61 gtggattctagggtgagggttcatttaagtccctcaccagtgaaccat 108  Q
    ||||||||| ||||||||||||| |||||||||||||| ||| |||||    
T  9830573 gtggattctcgggtgagggttcaattaagtccctcaccggtggaccat 9830620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 107
Target Start/End: Original strand, 15287567 - 15287614
Alignment:
Q  60 ggtggattctagggtgagggttcatttaagtccctcaccagtgaacca 107  Q
    ||||||||||||||||||||| || |||||||||||||| ||| ||||    
T  15287567 ggtggattctagggtgagggtccaattaagtccctcaccggtggacca 15287614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 47677523 - 47677569
Alignment:
Q  62 tggattctagggtgagggttcatttaagtccctcaccagtgaaccat 108  Q
    ||||||||||| |||||||||| |||||||||||||  |||||||||    
T  47677523 tggattctaggatgagggttcaattaagtccctcactggtgaaccat 47677569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 48626160 - 48626114
Alignment:
Q  62 tggattctagggtgagggttcatttaagtccctcaccagtgaaccat 108  Q
    |||||||||||||||||||||| ||||||||||| ||  ||||||||    
T  48626160 tggattctagggtgagggttcaattaagtccctctccgatgaaccat 48626114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 160
Target Start/End: Original strand, 53242664 - 53242766
Alignment:
Q  58 taggtggattctagggtgagggttcatttaagtccctcaccagtgaaccatgtaaaatacaccgttagattaaatcaatagttcagatttaatgaaaata 157  Q
    |||||||||| ||||||||||  ||| |||||||||||| | ||| |||| | | || | ||| || |||| ||||||| ||| ||||||| ||||||||    
T  53242664 taggtggattatagggtgaggaatcaattaagtccctcatcggtggaccacgaagaaaataccatttgattgaatcaatggttaagatttattgaaaata 53242763  T
Q  158 aaa 160  Q
    |||    
T  53242764 aaa 53242766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 109
Target Start/End: Complemental strand, 47571987 - 47571938
Alignment:
Q  60 ggtggattctagggtgagggttcatttaagtccctcaccagtgaaccatg 109  Q
    |||| ||||||||||||||| ||| |||||||||||||| ||||| ||||    
T  47571987 ggtgaattctagggtgagggatcaattaagtccctcaccggtgaaacatg 47571938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 98
Target Start/End: Original strand, 47808359 - 47808400
Alignment:
Q  57 ataggtggattctagggtgagggttcatttaagtccctcacc 98  Q
    ||||||||||||||||||||||| ||| | ||||||||||||    
T  47808359 ataggtggattctagggtgagggatcaatcaagtccctcacc 47808400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 104
Target Start/End: Complemental strand, 53344790 - 53344745
Alignment:
Q  59 aggtggattctagggtgagggttcatttaagtccctcaccagtgaa 104  Q
    ||||||||||||||||||||| ||| | |||||||||||| |||||    
T  53344790 aggtggattctagggtgagggatcaatcaagtccctcaccggtgaa 53344745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 16076209 - 16076249
Alignment:
Q  59 aggtggattctagggtgagggttcatttaagtccctcacca 99  Q
    |||||||||||||||||||||| || ||| |||||||||||    
T  16076209 aggtggattctagggtgagggtccaattaggtccctcacca 16076249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 108
Target Start/End: Complemental strand, 53343904 - 53343856
Alignment:
Q  60 ggtggattctagggtgagggttcatttaagtccctcaccagtgaaccat 108  Q
    ||||||||||||||||||||||||   |||||||||||| |||| ||||    
T  53343904 ggtggattctagggtgagggttcaaacaagtccctcaccggtgatccat 53343856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 64 - 226
Target Start/End: Complemental strand, 30514586 - 30514424
Alignment:
Q  64 gattctagggtgagggttcatttaagtccctcaccagtgaaccatgtaaaatacaccgttagattaaatcaatagttcagatttaatgaaaat-aaaagg 162  Q
    ||||||||||||||| |||| ||||||| ||||||  ||||||||  |||| |||||||||||||||||||||| |||| | ||||||||||| |||||     
T  30514586 gattctagggtgaggattcaattaagtctctcaccgatgaaccatacaaaacacaccgttagattaaatcaatatttcata-ttaatgaaaataaaaagc 30514488  T
Q  163 tgatcatatactcatttttacacacaatattctccctctctcttctccatctgtgtttcttctc 226  Q
     || ||||||| ||||||| ||||||||| || ||||||||||||||||| || ||||| ||||    
T  30514487 ggaacatatacacatttttgcacacaatactccccctctctcttctccatatgcgtttcatctc 30514424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 57 - 107
Target Start/End: Complemental strand, 20606972 - 20606922
Alignment:
Q  57 ataggtggattctagggtgagggttcatttaagtccctcaccagtgaacca 107  Q
    ||||||| ||||||||||||||||||| |||||||||||||| ||||||||    
T  20606972 ataggtgaattctagggtgagggttcaattaagtccctcaccggtgaacca 20606922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 107
Target Start/End: Original strand, 10173934 - 10173983
Alignment:
Q  58 taggtggattctagggtgagggttcatttaagtccctcaccagtgaacca 107  Q
    |||||||||||||||||||||||||  |||||||||||||| ||||||||    
T  10173934 taggtggattctagggtgagggttctgttaagtccctcaccggtgaacca 10173983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 58 - 104
Target Start/End: Complemental strand, 127785 - 127739
Alignment:
Q  58 taggtggattctagggtgagggttcatttaagtccctcaccagtgaa 104  Q
    |||||||||||||||||||||||||| |||||||| ||||| |||||    
T  127785 taggtggattctagggtgagggttcaattaagtccttcaccggtgaa 127739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 106
Target Start/End: Original strand, 6873519 - 6873568
Alignment:
Q  57 ataggtggattctagggtgagggttcatttaagtccctcaccagtgaacc 106  Q
    ||||||||||| ||||||||||||||| |||||||||| ||| |||||||    
T  6873519 ataggtggattttagggtgagggttcaattaagtcccttaccggtgaacc 6873568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 107
Target Start/End: Original strand, 127033 - 127080
Alignment:
Q  60 ggtggattctagggtgagggttcatttaagtccctcaccagtgaacca 107  Q
    ||||||||||||||||||||||||  ||||||||||| ||||| ||||    
T  127033 ggtggattctagggtgagggttcaactaagtccctcatcagtggacca 127080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 98
Target Start/End: Complemental strand, 44297457 - 44297424
Alignment:
Q  65 attctagggtgagggttcatttaagtccctcacc 98  Q
    ||||||||||||||||||| ||||||||||||||    
T  44297457 attctagggtgagggttcaattaagtccctcacc 44297424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 9157014 - 9157062
Alignment:
Q  59 aggtggattctagggtgagggttcatttaagtccctcaccagtgaacca 107  Q
    ||||||||||||||| ||||||||  |||| ||||||||| ||||||||    
T  9157014 aggtggattctagggcgagggttctattaaatccctcaccggtgaacca 9157062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 160
Target Start/End: Original strand, 13265543 - 13265641
Alignment:
Q  60 ggtggattctagggtgagggttcatttaagtccctcaccagtgaaccatgtaaaatacaccgttagattaaatcaatagttcagatttaatgaaaataaa 159  Q
    ||||||||||| |||||| ||||| |||| | ||||||| ||||| ||| ||||| | |||||| |||||||||||| ||| ||| ||| | ||||||||    
T  13265543 ggtggattctaaggtgagtgttcaattaa-tacctcaccggtgaagcatataaaa-ataccgttggattaaatcaatggtttagaattattaaaaataaa 13265640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 58 - 158
Target Start/End: Complemental strand, 26240921 - 26240821
Alignment:
Q  58 taggtggattctagggtgagggttcatttaagtccctcaccagtgaaccatgtaaaatacaccgttagattaaatcaatagttcagatttaatgaaaata 157  Q
    |||||||||||||||||||||||||| |||||||||||||| ||| |||||| | || | |||||| |||| ||||||| ||| ||||||| ||||||||    
T  26240921 taggtggattctagggtgagggttcaattaagtccctcaccggtggaccatgaagaaaataccgtttgattgaatcaatggttgagatttattgaaaata 26240822  T
Q  158 a 158  Q
    |    
T  26240821 a 26240821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 58 - 109
Target Start/End: Original strand, 26240112 - 26240163
Alignment:
Q  58 taggtggattctagggtgagggttcatttaagtccctcaccagtgaaccatg 109  Q
    |||||||||||||||||||||| ||| |||||||||||||| ||||||||||    
T  26240112 taggtggattctagggtgagggatcaattaagtccctcaccggtgaaccatg 26240163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 16449555 - 16449599
Alignment:
Q  60 ggtggattctagggtgagggttcatttaagtccctcaccagtgaa 104  Q
    |||||||||||||||||||||||| |||||||||||||| |||||    
T  16449555 ggtggattctagggtgagggttcaattaagtccctcaccggtgaa 16449599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 16459129 - 16459173
Alignment:
Q  60 ggtggattctagggtgagggttcatttaagtccctcaccagtgaa 104  Q
    |||||||||||||||||||||||| |||||||||||||| |||||    
T  16459129 ggtggattctagggtgagggttcaattaagtccctcaccggtgaa 16459173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 59 - 113
Target Start/End: Complemental strand, 24848475 - 24848421
Alignment:
Q  59 aggtggattctagggtgagggttcatttaagtccctcaccagtgaaccatgtaaa 113  Q
    ||||||||||||||||||||||||  |||||||||||||| ||| ||||| ||||    
T  24848475 aggtggattctagggtgagggttctattaagtccctcaccggtgtaccatttaaa 24848421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 60 - 102
Target Start/End: Complemental strand, 27746206 - 27746164
Alignment:
Q  60 ggtggattctagggtgagggttcatttaagtccctcaccagtg 102  Q
    |||||||||||| ||||||||||| ||||||||||||||||||    
T  27746206 ggtggattctagcgtgagggttcaattaagtccctcaccagtg 27746164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 113
Target Start/End: Original strand, 24847783 - 24847836
Alignment:
Q  60 ggtggattctagggtgagggttcatttaagtccctcaccagtgaaccatgtaaa 113  Q
    |||||||||||||||||||||||  |||||||||||||| ||| ||||| ||||    
T  24847783 ggtggattctagggtgagggttctattaagtccctcaccggtgtaccatttaaa 24847836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 98
Target Start/End: Original strand, 27745553 - 27745594
Alignment:
Q  57 ataggtggattctagggtgagggttcatttaagtccctcacc 98  Q
    |||||||||||||| |||||||||||| ||||||||||||||    
T  27745553 ataggtggattctaaggtgagggttcaattaagtccctcacc 27745594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 2261592 - 2261544
Alignment:
Q  59 aggtggattctagggtgagggttcatttaagtccctcaccagtgaacca 107  Q
    ||||| ||| ||||||||||||||| ||||| |||||||||||||||||    
T  2261592 aggtgaattttagggtgagggttcaattaagcccctcaccagtgaacca 2261544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 104
Target Start/End: Complemental strand, 21257967 - 21257921
Alignment:
Q  58 taggtggattctagggtgagggttcatttaagtccctcaccagtgaa 104  Q
    |||||| |||||| |||||||||||| |||||| |||||||||||||    
T  21257967 taggtgcattctaaggtgagggttcaattaagttcctcaccagtgaa 21257921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 51547592 - 51547648
Alignment:
Q  60 ggtggattctagggtgagggttcatttaagtccctcaccagtgaaccatgtaaaata 116  Q
    ||||||||||||||||| |||| | |||||||||| ||| ||| |||||| ||||||    
T  51547592 ggtggattctagggtgatggtttaattaagtcccttaccggtggaccatgaaaaata 51547648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 60 - 148
Target Start/End: Original strand, 767136 - 767224
Alignment:
Q  60 ggtggattctagggtgagggttcatttaagtccctcaccagtgaaccatgtaaaatacaccgttagattaaatcaatagttcagattta 148  Q
    ||||||||||||||||||||| || |||||||||||||| ||| | |||| |||| |||||||||||||||||  || |||||||||||    
T  767136 ggtggattctagggtgagggtccaattaagtccctcaccggtggatcatgaaaaaaacaccgttagattaaatacatggttcagattta 767224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 162
Target Start/End: Original strand, 24873749 - 24873853
Alignment:
Q  58 taggtggattctagggtgagggttcatttaagtccctcaccagtgaaccatgtaaaatacaccgttagattaaatcaatagttcagatttaatgaaaata 157  Q
    ||||||||||||||||||||||| || ||| |||||||| ||||| |||||| |||| |||||  |||||||||| | | ||| ||||||| | ||| ||    
T  24873749 taggtggattctagggtgagggtccaattaggtccctcatcagtggaccatgaaaaaaacaccaatagattaaataagtggtttagatttattcaaatta 24873848  T
Q  158 aaagg 162  Q
    |||||    
T  24873849 aaagg 24873853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 60 - 107
Target Start/End: Complemental strand, 30581314 - 30581267
Alignment:
Q  60 ggtggattctagggtgagggttcatttaagtccctcaccagtgaacca 107  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||    
T  30581314 ggtgaattctagggtgagggttcaattaagtccctcaccagtgaacca 30581267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 40485258 - 40485219
Alignment:
Q  19 gtatccaaaatataactttcacagaatgggataaaatcat 58  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  40485258 gtatccaaaatataactttcacagaatgggataaaatcat 40485219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 55 - 109
Target Start/End: Complemental strand, 41359024 - 41358970
Alignment:
Q  55 tcataggtggattctagggtgagggttcatttaagtccctcaccagtgaaccatg 109  Q
    ||||||||||||||||||||||||| ||| |||||||| ||||||||| ||||||    
T  41359024 tcataggtggattctagggtgagggatcaattaagtccatcaccagtggaccatg 41358970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 65 - 107
Target Start/End: Original strand, 36611556 - 36611598
Alignment:
Q  65 attctagggtgagggttcatttaagtccctcaccagtgaacca 107  Q
    ||||||||||||||||||| |||||||||||||| ||||||||    
T  36611556 attctagggtgagggttcaattaagtccctcaccggtgaacca 36611598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 160
Target Start/End: Complemental strand, 46491737 - 46491636
Alignment:
Q  59 aggtggattctagggtgagggttcatttaagtccctcaccagtgaaccatgtaaaatacaccgttagattaaatcaatagttcagatttaatgaaaataa 158  Q
    |||||||||||||||||||||||||  ||||||||||||| ||| || ||  |||| | ||| || |||||||||||| || || |||   |||||||||    
T  46491737 aggtggattctagggtgagggttcaactaagtccctcaccggtggactatcaaaaaaataccatttgattaaatcaatggtccaaattatttgaaaataa 46491638  T
Q  159 aa 160  Q
    ||    
T  46491637 aa 46491636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 17114145 - 17114181
Alignment:
Q  60 ggtggattctagggtgagggttcatttaagtccctca 96  Q
    |||||||||||||||||||||||| ||||||||||||    
T  17114145 ggtggattctagggtgagggttcaattaagtccctca 17114181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 110
Target Start/End: Original strand, 28007155 - 28007207
Alignment:
Q  58 taggtggattctagggtgagggttcatttaagtccctcaccagtgaaccatgt 110  Q
    ||||||||||||||||||||||  || |||||||||||||| ||| |||||||    
T  28007155 taggtggattctagggtgagggagcaattaagtccctcaccggtggaccatgt 28007207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 160
Target Start/End: Complemental strand, 36611542 - 36611442
Alignment:
Q  60 ggtggattctagggtgagggttcatttaagtccctcaccagtgaaccatgtaaaatacaccgttagattaaatcaatagttcagatttaatgaaaataaa 159  Q
    |||||||||||||||||||||||| |||| || |||||| ||| |||||| | || | ||| ||||||| ||| ||| ||| ||||||  | ||||||||    
T  36611542 ggtggattctagggtgagggttcaattaaatctctcaccggtggaccatgaacaaaataccattagatttaattaatggtttagatttttttaaaataaa 36611443  T
Q  160 a 160  Q
    |    
T  36611442 a 36611442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 107
Target Start/End: Original strand, 3314955 - 3315002
Alignment:
Q  60 ggtggattctagggtgagggttcatttaagtccctcaccagtgaacca 107  Q
    ||||||||||| |||||||||||| |||||||||||||| ||| ||||    
T  3314955 ggtggattctacggtgagggttcaattaagtccctcaccggtgtacca 3315002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 107
Target Start/End: Complemental strand, 41965825 - 41965778
Alignment:
Q  60 ggtggattctagggtgagggttcatttaagtccctcaccagtgaacca 107  Q
    ||||||||||||||||||||| || |||||||||||||| ||| ||||    
T  41965825 ggtggattctagggtgagggtccaattaagtccctcaccggtggacca 41965778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 96
Target Start/End: Complemental strand, 24874628 - 24874590
Alignment:
Q  58 taggtggattctagggtgagggttcatttaagtccctca 96  Q
    |||||||||||||||||||||||||| ||| ||||||||    
T  24874628 taggtggattctagggtgagggttcaattaggtccctca 24874590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 107
Target Start/End: Complemental strand, 36611777 - 36611739
Alignment:
Q  69 tagggtgagggttcatttaagtccctcaccagtgaacca 107  Q
    ||||||||||||||| |||||||||||| ||||||||||    
T  36611777 tagggtgagggttcaattaagtccctcatcagtgaacca 36611739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 41965106 - 41965148
Alignment:
Q  54 atcataggtggattctagggtgagggttcatttaagtccctca 96  Q
    |||| |||||||||||||||||||||| || ||||||||||||    
T  41965106 atcacaggtggattctagggtgagggtccaattaagtccctca 41965148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 98
Target Start/End: Complemental strand, 42818601 - 42818563
Alignment:
Q  60 ggtggattctagggtgagggttcatttaagtccctcacc 98  Q
    |||| ||||||||||||||||||| ||||||||||||||    
T  42818601 ggtgaattctagggtgagggttcaattaagtccctcacc 42818563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 135
Target Start/End: Complemental strand, 10591014 - 10590941
Alignment:
Q  62 tggattctagggtgagggttcatttaagtccctcaccagtgaaccatgtaaaatacaccgttagattaaatcaa 135  Q
    ||||||||| |||||||||||| |||| ||||||||| ||||| ||   |||| ||| ||||||||| ||||||    
T  10591014 tggattctaaggtgagggttcaattaactccctcacctgtgaaacaccaaaaaaacatcgttagattgaatcaa 10590941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 98
Target Start/End: Complemental strand, 44876980 - 44876944
Alignment:
Q  62 tggattctagggtgagggttcatttaagtccctcacc 98  Q
    |||||||||||||||||| ||| ||||||||||||||    
T  44876980 tggattctagggtgagggatcaattaagtccctcacc 44876944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 46491009 - 46491049
Alignment:
Q  59 aggtggattctagggtgagggttcatttaagtccctcacca 99  Q
    ||||||||| ||||||||||||||| |||||||| ||||||    
T  46491009 aggtggattgtagggtgagggttcaattaagtccatcacca 46491049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 60 - 160
Target Start/End: Original strand, 52534990 - 52535090
Alignment:
Q  60 ggtggattctagggtgagggttcatttaagtccctcaccagtgaaccatgtaaaatacaccgttagattaaatcaatagttcagatttaatgaaaataaa 159  Q
    ||||||||||||| |||||||||| |||||  |||||||  |||| ||| ||||||||||| ||| |||||||| ||  |||||||||||||||||||||    
T  52534990 ggtggattctaggatgagggttcaattaagatcctcaccgatgaatcatataaaatacaccattaaattaaatccatgtttcagatttaatgaaaataaa 52535089  T
Q  160 a 160  Q
    |    
T  52535090 a 52535090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 57 - 159
Target Start/End: Original strand, 34941499 - 34941601
Alignment:
Q  57 ataggtggattctagggtgagggttcatttaagtccctcaccagtgaaccatgtaaaatacaccgttagattaaatcaatagttcagatttaatgaaaat 156  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||| | |||| | || | |||||| |||| ||||||  ||| ||||||| |||||||    
T  34941499 ataggtggattctagggtgagggttcaattaagtccctcactagtggatcatgaagaaaataccgtttgattgaatcaacggttgagatttattgaaaat 34941598  T
Q  157 aaa 159  Q
    |||    
T  34941599 aaa 34941601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 60 - 148
Target Start/End: Original strand, 51386456 - 51386544
Alignment:
Q  60 ggtggattctagggtgagggttcatttaagtccctcaccagtgaaccatgtaaaatacaccgttagattaaatcaatagttcagattta 148  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||| |||||| | ||| ||| ||| ||||||  || ||||||||    
T  51386456 ggtggattttagggtgagggttcaattaagtccctcaccagtgaaccacgtaaaaaataccattaaatttaatcaaccgtccagattta 51386544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 59 - 158
Target Start/End: Complemental strand, 24666901 - 24666802
Alignment:
Q  59 aggtggattctagggtgagggttcatttaagtccctcaccagtgaaccatgtaaaatacaccgttagattaaatcaatagttcagatttaatgaaaataa 158  Q
    ||||||||| ||||||||||||||| ||||||||||| |  ||| |||||| |||| | |||||| |||| ||||||| ||| ||||||| |||||||||    
T  24666901 aggtggattatagggtgagggttcaattaagtccctccctggtggaccatgaaaaaaataccgtttgattgaatcaatggttgagatttattgaaaataa 24666802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 109
Target Start/End: Original strand, 24666129 - 24666178
Alignment:
Q  60 ggtggattctagggtgagggttcatttaagtccctcaccagtgaaccatg 109  Q
    |||||||||||||||||||| ||| |||||||||||||| ||||||||||    
T  24666129 ggtggattctagggtgagggatcaattaagtccctcaccggtgaaccatg 24666178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 14527625 - 14527577
Alignment:
Q  59 aggtggattctagggtgagggttcatttaagtccctcaccagtgaacca 107  Q
    ||||||||||||||||||||| ||| |||||||||||||| ||||||||    
T  14527625 aggtggattctagggtgagggatcaattaagtccctcaccggtgaacca 14527577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 160
Target Start/End: Complemental strand, 18363697 - 18363601
Alignment:
Q  64 gattctagggtgagggttcatttaagtccctcaccagtgaaccatgtaaaatacaccgttagattaaatcaatagttcagatttaatgaaaataaaa 160  Q
    |||||||||||||||||||| |||||| ||||||| ||| |||| | | || | ||| || |||| ||||||| ||| ||||||| |||||||||||    
T  18363697 gattctagggtgagggttcaattaagttcctcaccggtggaccacgaagaaaataccattcgattgaatcaatggttgagatttattgaaaataaaa 18363601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 160
Target Start/End: Original strand, 36599231 - 36599327
Alignment:
Q  64 gattctagggtgagggttcatttaagtccctcaccagtgaaccatgtaaaatacaccgttagattaaatcaatagttcagatttaatgaaaataaaa 160  Q
    |||||||||||||||||||| |||||| ||||||| ||| |||| | | || | ||| || |||| ||||||| ||| ||||||| |||||||||||    
T  36599231 gattctagggtgagggttcaattaagttcctcaccggtggaccacgaagaaaataccattcgattgaatcaatggttgagatttattgaaaataaaa 36599327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 107
Target Start/End: Complemental strand, 53778461 - 53778416
Alignment:
Q  62 tggattctagggtgagggttcatttaagtccctcaccagtgaacca 107  Q
    ||||||||||||||||||| ||||||||||||||||| ||| ||||    
T  53778461 tggattctagggtgagggtccatttaagtccctcaccggtggacca 53778416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 132
Target Start/End: Original strand, 25055109 - 25055181
Alignment:
Q  60 ggtggattctagggtgagggttcatttaagtccctcaccagtgaaccatgtaaaatacaccgttagattaaat 132  Q
    |||||||||||||||||||||||| |||||| |||||   ||| |||||| |||| ||||| ||| |||||||    
T  25055109 ggtggattctagggtgagggttcaattaagttcctcattggtggaccatgaaaaaaacaccattaaattaaat 25055181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 97
Target Start/End: Complemental strand, 26354282 - 26354243
Alignment:
Q  58 taggtggattctagggtgagggttcatttaagtccctcac 97  Q
    ||||||| |||||||||||||||||| |||||||||||||    
T  26354282 taggtgggttctagggtgagggttcaattaagtccctcac 26354243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 148
Target Start/End: Complemental strand, 25056339 - 25056253
Alignment:
Q  62 tggattctagggtgagggttcatttaagtccctcaccagtgaaccatgtaaaatacaccgttagattaaatcaatagttcagattta 148  Q
    ||||||||| |||||| ||||| | |||||| ||||| ||| ||||||  ||| ||| ||||||||||||| ||| ||||| |||||    
T  25056339 tggattctaaggtgagagttcaatcaagtccttcaccggtggaccatgagaaaaacatcgttagattaaataaatggttcaaattta 25056253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 114
Target Start/End: Complemental strand, 34451485 - 34451431
Alignment:
Q  60 ggtggattctagggtgagggttcatttaagtccctcaccagtgaaccatgtaaaa 114  Q
    |||||||||||||||||||| ||| |||||| ||||||| ||||| ||| |||||    
T  34451485 ggtggattctagggtgagggatcaattaagtacctcaccggtgaagcatataaaa 34451431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 98
Target Start/End: Original strand, 42792775 - 42792813
Alignment:
Q  60 ggtggattctagggtgagggttcatttaagtccctcacc 98  Q
    ||||||||||||||||||||| || ||||||||||||||    
T  42792775 ggtggattctagggtgagggtccaattaagtccctcacc 42792813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 160
Target Start/End: Complemental strand, 47764147 - 47764049
Alignment:
Q  62 tggattctagggtgagggttcatttaagtccctcaccagtgaaccatgtaaaatacaccgttagattaaatcaatagttcagatttaatgaaaataaaa 160  Q
    ||||||||||||| |||||||| | || ||||||||| ||| |||||| |||||| ||| | ||||| ||||||  ||||| ||||  | |||||||||    
T  47764147 tggattctagggtaagggttcaatcaaatccctcaccggtggaccatgaaaaatataccataagatttaatcaaaggttcatatttgtttaaaataaaa 47764049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 97
Target Start/End: Original strand, 52129421 - 52129458
Alignment:
Q  60 ggtggattctagggtgagggttcatttaagtccctcac 97  Q
    ||||||||||| |||||||||||| |||||||||||||    
T  52129421 ggtggattctaaggtgagggttcaattaagtccctcac 52129458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 98
Target Start/End: Original strand, 34450813 - 34450853
Alignment:
Q  58 taggtggattctagggtgagggttcatttaagtccctcacc 98  Q
    |||||| ||||||||||||||| ||| ||||||||||||||    
T  34450813 taggtgaattctagggtgagggatcaattaagtccctcacc 34450853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 59 - 148
Target Start/End: Original strand, 26847096 - 26847185
Alignment:
Q  59 aggtggattctagggtgagggttcatttaagtccctcaccagtgaaccatgtaaaatacaccgttagattaaatcaatagttcagattta 148  Q
    |||||||||||||||||||||| || |||||||||||||| |||||||| | |||| | ||| ||||||| ||||||| || ||||||||    
T  26847096 aggtggattctagggtgagggtccaattaagtccctcaccggtgaaccacggaaaaaataccattagatttaatcaatcgtccagattta 26847185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 107
Target Start/End: Complemental strand, 4402335 - 4402288
Alignment:
Q  60 ggtggattctagggtgagggttcatttaagtccctcaccagtgaacca 107  Q
    |||||||||||||||||||||||  |||||||||||||| ||||||||    
T  4402335 ggtggattctagggtgagggttctattaagtccctcaccggtgaacca 4402288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 128
Target Start/End: Original strand, 22632323 - 22632390
Alignment:
Q  61 gtggattctagggtgagggttcatttaagtccctcaccagtgaaccatgtaaaatacaccgttagatt 128  Q
    ||||||||||||||||||| ||| |||||||||||||| ||| |||||| |||  | |||||||||||    
T  22632323 gtggattctagggtgagggatcaattaagtccctcaccggtggaccatgaaaataaaaccgttagatt 22632390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 109
Target Start/End: Complemental strand, 22633018 - 22632967
Alignment:
Q  58 taggtggattctagggtgagggttcatttaagtccctcaccagtgaaccatg 109  Q
    |||||||||||||||||||||| ||| |||||||||||||| ||| ||||||    
T  22633018 taggtggattctagggtgagggatcaattaagtccctcaccggtggaccatg 22632967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 59 - 109
Target Start/End: Original strand, 42094008 - 42094058
Alignment:
Q  59 aggtggattctagggtgagggttcatttaagtccctcaccagtgaaccatg 109  Q
    ||||||||||||||||||||| ||| |||||||||||||| ||||| ||||    
T  42094008 aggtggattctagggtgagggatcaattaagtccctcaccggtgaagcatg 42094058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 108
Target Start/End: Complemental strand, 16911094 - 16911046
Alignment:
Q  60 ggtggattctagggtgagggttcatttaagtccctcaccagtgaaccat 108  Q
    |||||||||||||||||||| ||| |||||||||||||| ||| |||||    
T  16911094 ggtggattctagggtgagggctcaattaagtccctcaccggtgtaccat 16911046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 107
Target Start/End: Original strand, 36180692 - 36180734
Alignment:
Q  65 attctagggtgagggttcatttaagtccctcaccagtgaacca 107  Q
    ||||||||||||||||| | |||||||||||||| ||||||||    
T  36180692 attctagggtgagggtttaattaagtccctcaccggtgaacca 36180734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 104
Target Start/End: Original strand, 202576 - 202621
Alignment:
Q  59 aggtggattctagggtgagggttcatttaagtccctcaccagtgaa 104  Q
    ||||| |||||||| |||||||||| |||||||||||||| |||||    
T  202576 aggtgaattctaggatgagggttcaattaagtccctcaccggtgaa 202621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 104
Target Start/End: Original strand, 317413 - 317458
Alignment:
Q  59 aggtggattctagggtgagggttcatttaagtccctcaccagtgaa 104  Q
    ||||| |||||||| |||||||||| |||||||||||||| |||||    
T  317413 aggtgaattctaggatgagggttcaattaagtccctcaccggtgaa 317458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 60 - 114
Target Start/End: Complemental strand, 23253534 - 23253480
Alignment:
Q  60 ggtggattctagggtgagggttcatttaagtccctcaccagtgaaccatgtaaaa 114  Q
    ||||||||||||||||||||| || |||||||||||||| |||||||| ||||||    
T  23253534 ggtggattctagggtgagggtccaattaagtccctcaccggtgaaccacgtaaaa 23253480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 160
Target Start/End: Original strand, 24565573 - 24565673
Alignment:
Q  60 ggtggattctagggtgagggttcatttaagtccctcaccagtgaaccatgtaaaatacaccgttagattaaatcaatagttcagatttaatgaaaataaa 159  Q
    |||||||||||||||||||||||| |||| ||||||||| ||| |||||| | || | ||| ||||||| ||| ||| ||| ||||||  | ||||||||    
T  24565573 ggtggattctagggtgagggttcaattaaatccctcaccggtggaccatgaacaaaataccattagatttaattaatggtttagatttttttaaaataaa 24565672  T
Q  160 a 160  Q
    |    
T  24565673 a 24565673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 160
Target Start/End: Original strand, 24606609 - 24606709
Alignment:
Q  60 ggtggattctagggtgagggttcatttaagtccctcaccagtgaaccatgtaaaatacaccgttagattaaatcaatagttcagatttaatgaaaataaa 159  Q
    |||||||||||||||||||||||| |||| ||||||||| ||| |||||| | || | ||| ||||||| ||| ||| ||| ||||||  | ||||||||    
T  24606609 ggtggattctagggtgagggttcaattaaatccctcaccggtggaccatgaacaaaataccattagatttaattaatggtttagatttttttaaaataaa 24606708  T
Q  160 a 160  Q
    |    
T  24606709 a 24606709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 107
Target Start/End: Complemental strand, 29595642 - 29595595
Alignment:
Q  60 ggtggattctagggtgagggttcatttaagtccctcaccagtgaacca 107  Q
    |||||||||||| ||||||||||| |||||||||||||||||| ||||    
T  29595642 ggtggattctagcgtgagggttcaattaagtccctcaccagtgtacca 29595595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 107
Target Start/End: Complemental strand, 39937954 - 39937907
Alignment:
Q  60 ggtggattctagggtgagggttcatttaagtccctcaccagtgaacca 107  Q
    |||||||||||||||||||||||| |||||||||||||| ||| ||||    
T  39937954 ggtggattctagggtgagggttcagttaagtccctcaccggtggacca 39937907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 60 - 98
Target Start/End: Complemental strand, 27345967 - 27345929
Alignment:
Q  60 ggtggattctagggtgagggttcatttaagtccctcacc 98  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  27345967 ggtggattctagggtgagggttcaattaagtccctcacc 27345929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 104
Target Start/End: Complemental strand, 2029096 - 2029051
Alignment:
Q  59 aggtggattctagggtgagggttcatttaagtccctcaccagtgaa 104  Q
    ||||||||||||||||||||| ||| |||||||||||||| |||||    
T  2029096 aggtggattctagggtgagggctcaattaagtccctcaccggtgaa 2029051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 99
Target Start/End: Original strand, 39936253 - 39936294
Alignment:
Q  58 taggtggattctagggtgagggttcatttaagtccctcacca 99  Q
    ||||||||||||| |||||||||||| |||||||||||||||    
T  39936253 taggtggattctaaggtgagggttcaattaagtccctcacca 39936294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 128
Target Start/End: Original strand, 23257319 - 23257387
Alignment:
Q  60 ggtggattctagggtgagggttcatttaagtccctcaccagtgaaccatgtaaaatacaccgttagatt 128  Q
    |||||||||||| |||||||| || |||||||||||||| || ||||| |||||| | ||| |||||||    
T  23257319 ggtggattctagagtgagggtccaattaagtccctcaccggtaaaccacgtaaaaaaaaccattagatt 23257387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 98
Target Start/End: Complemental strand, 40372208 - 40372170
Alignment:
Q  60 ggtggattctagggtgagggttcatttaagtccctcacc 98  Q
    |||||||||||||||||||||||| |||||| |||||||    
T  40372208 ggtggattctagggtgagggttcaattaagttcctcacc 40372170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 107
Target Start/End: Original strand, 39466883 - 39466932
Alignment:
Q  58 taggtggattctagggtgagggttcatttaagtccctcaccagtgaacca 107  Q
    |||||| |||||||||||||||| || |||||||||||||| ||| ||||    
T  39466883 taggtgaattctagggtgagggtccaattaagtccctcaccggtggacca 39466932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 5346331 - 5346295
Alignment:
Q  59 aggtggattctagggtgagggttcatttaagtccctc 95  Q
    ||||||||||||||||||||| ||| |||||||||||    
T  5346331 aggtggattctagggtgagggctcacttaagtccctc 5346295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 90
Target Start/End: Original strand, 29594904 - 29594936
Alignment:
Q  58 taggtggattctagggtgagggttcatttaagt 90  Q
    |||||||||||||||||||||||||| ||||||    
T  29594904 taggtggattctagggtgagggttcaattaagt 29594936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 35524121 - 35524169
Alignment:
Q  59 aggtggattctagggtgagggttcatttaagtccctcaccagtgaacca 107  Q
    |||||||||||||| |||| ||||| |||||||||||||| ||| ||||    
T  35524121 aggtggattctaggatgagagttcaattaagtccctcaccggtggacca 35524169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 98
Target Start/End: Original strand, 6462 - 6502
Alignment:
Q  58 taggtggattctagggtgagggttcatttaagtccctcacc 98  Q
    ||||||| |||||||||||||||||| ||||||||||||||    
T  6462 taggtgggttctagggtgagggttcaattaagtccctcacc 6502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 5312238 - 5312283
Alignment:
Q  57 ataggtggattctagggtgagggttcatttaagtccctcaccagtg 102  Q
    ||||||| ||||||  ||||||||||| ||||||||||||||||||    
T  5312238 ataggtgaattctacagtgagggttcaattaagtccctcaccagtg 5312283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 109
Target Start/End: Complemental strand, 16719042 - 16718993
Alignment:
Q  60 ggtggattctagggtgagggttcatttaagtccctcaccagtgaaccatg 109  Q
    ||||||||||||||||| || ||| |||||||||||||| ||| ||||||    
T  16719042 ggtggattctagggtgacggatcaattaagtccctcaccggtggaccatg 16718993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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