View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7380_high_52 (Length: 229)
Name: NF7380_high_52
Description: NF7380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7380_high_52 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 14771452 - 14771244
Alignment:
| Q |
1 |
ctctcataaaaaagaacaactataaaattcacataatgaacaaataaaactgtgactccagtcaacaatattaattcttctttgtagcttttctttgatc |
100 |
Q |
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| T |
14771452 |
ctctcataaaaaagaacaactataaaattcagataatgagcaaataaaactgtgactccagtcaacaatattaattcttctttgtagcttttctttgaac |
14771353 |
T |
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| Q |
101 |
ctttctttgtgaagtagttgaaatatcttact-----tgcaatttcaacacaattgagttattagtttagtgcgtctatttctctccaattaatgaatga |
195 |
Q |
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| T |
14771352 |
ctttctttgtgaagtagttgaaatatcttacttgacctgcaatttcaacacaattgagttattagtttagtgcgtctttttctctacaattaatgaatga |
14771253 |
T |
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| Q |
196 |
aacagcaac |
204 |
Q |
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||||||||| |
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| T |
14771252 |
aacagcaac |
14771244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 122
Target Start/End: Original strand, 47648566 - 47648614
Alignment:
| Q |
74 |
attcttctttgtagcttttctttgatcctttctttgtgaagtagttgaa |
122 |
Q |
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|||||| |||||||||||| ||||| |||||||||||||| ||||||| |
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| T |
47648566 |
attcttttttgtagcttttgtttgaatctttctttgtgaagcagttgaa |
47648614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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