View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7380_high_8 (Length: 480)
Name: NF7380_high_8
Description: NF7380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7380_high_8 |
 | |
|
| [»] scaffold0302 (1 HSPs) |
| | |
|
| [»] scaffold0211 (1 HSPs) |
| | |
|
| [»] scaffold0100 (2 HSPs) |
| | |
|
| [»] scaffold0084 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 473
Target Start/End: Original strand, 4286319 - 4286793
Alignment:
| Q |
1 |
ttaattaattttatcaatgataagcattgcatggtaacatgatcaagtcctataaataccttgcatggcaacgaacagcaaaaacacaaaacaactacaa |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4286319 |
ttaattaattttatcaataataagcattgcatggtaacatgatcaagtcctataaataccttgcatggcagcgaacagcaaaaacacaaaacaactacaa |
4286418 |
T |
|
| Q |
101 |
catcttatacatat--aattcataataattaattaacaaccatgtcaactagatccctcaccatatgcataattgctcatgtgtggctctttatgatcac |
198 |
Q |
| |
|
| |||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
4286419 |
cctcttatacatatataattcataataattaattaacaaccatgtcaatcagacccctcaccatattcatcattgctcatgtgtggctctttatgatcac |
4286518 |
T |
|
| Q |
199 |
aacatcagtagcacaaattgtcatagacacaagtggcgaacccgttgaggacgatgaggaatacttcatcaggcctgctatcacaggcaatggaggaggt |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4286519 |
aacatcagtagcacaaattgtcatagacacaagtggcgaacccgttgaggacgatgaggaatacttcatcaggcctgctatcacaggcaatggaggaggt |
4286618 |
T |
|
| Q |
299 |
tccattttggtcaccagaaatgggccatgccctttgcatgttggtcttgggaacagtgaagggacacttggaatggctgtgaaattcactcctttcgctc |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4286619 |
tccattttggtcaccagaaatgggccatgccctttgcacgttggtcttgggaacagtgaagggacacttggaatggctgtgaaattcactcctttcgctc |
4286718 |
T |
|
| Q |
399 |
ctcgtcnnnnnnnnnnnnnnnnnnnnntgaggcttaacagagacttgagagtaacattccaaggtttcacaggtt |
473 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4286719 |
ctcgtcatgatgatgatgatgatgatgtgaggcttaacagagacttgagagtaacattccaaggtttcacaggtt |
4286793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 51 - 473
Target Start/End: Original strand, 4294842 - 4295264
Alignment:
| Q |
51 |
tataaataccttgcatggcaacgaacagcaaaaacacaaaacaactacaacatcttatacatataattcataataattaattaacaaccatgtcaactag |
150 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| | | ||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4294842 |
tataaataccttgcatggcaacgaacagcaaaatcacaatatatctacatcctcttatacatataattcataataattaattaacaaccatgtcaactag |
4294941 |
T |
|
| Q |
151 |
atccctcaccatatgcataattgctcatgtgtggctctttatgatcacaacatcagtagcacaaattgtcatagacacaagtggcgaacccgttgaggac |
250 |
Q |
| |
|
||||||||| |||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4294942 |
atccctcactatattcatcattgctcatgtgttgctctttatgatcacaacatcagtagcacaaattgtcatagacacaagtggcgaacccgttgaggac |
4295041 |
T |
|
| Q |
251 |
gatgaggaatacttcatcaggcctgctatcacaggcaatggaggaggttccattttggtcaccagaaatgggccatgccctttgcatgttggtcttggga |
350 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| | |
|
|
| T |
4295042 |
gatgaggaatacttcatcaggcccgctatcacaggtaatggaggaggttccattttggtcaccagaaatgcgccatgccctttgcacgttggtcttggca |
4295141 |
T |
|
| Q |
351 |
acagtgaagggacacttggaatggctgtgaaattcactcctttcgctcctcgtcnnnnnnnnnnnnnnnnnnnnntgaggcttaacagagacttgagagt |
450 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
4295142 |
acagtgaagggacacttggagtggctgtgaaattcactcctttcgctcctcgtcatgatgatgatgatgatgatgtgaggcttaacagagacttgagagt |
4295241 |
T |
|
| Q |
451 |
aacattccaaggtttcacaggtt |
473 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
4295242 |
aacattccaaggtttcacaggtt |
4295264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0302 (Bit Score: 179; Significance: 2e-96; HSPs: 1)
Name: scaffold0302
Description:
Target: scaffold0302; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 123 - 401
Target Start/End: Complemental strand, 15402 - 15124
Alignment:
| Q |
123 |
ataattaattaacaaccatgtcaactagatccctcaccatatgcataattgctcatgtgtggctctttatgatcacaacatcagtagcacaaattgtcat |
222 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| |||| | |||||||||||||| || ||| | ||||||| || | ||| ||||||| |
|
|
| T |
15402 |
ataatcaattaacaaccatgtcaactagatccctcaccatattcatactagctcatgtgtggcttttgatggcaaaaacatcaatatcgcaatttgtcat |
15303 |
T |
|
| Q |
223 |
agacacaagtggcgaacccgttgaggacgatgaggaatacttcatcaggcctgctatcacaggcaatggaggaggttccattttggtcaccagaaatggg |
322 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
15302 |
cgacacaagtggtgaacccgttgaggacgatgaggaatacttcatcaggcctgctatcggaggcaatggaggaggttccactttggtcaccggaaatggg |
15203 |
T |
|
| Q |
323 |
ccatgccctttgcatgttggtcttgggaacagtgaagggacacttggaatggctgtgaaattcactcctttcgctcctc |
401 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||| ||||||| |
|
|
| T |
15202 |
ccatgccctttgcatgttggtcttgacaacagtgaagggacacttggagtggctgtgaagttcactccttttgctcctc |
15124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0211 (Bit Score: 161; Significance: 1e-85; HSPs: 1)
Name: scaffold0211
Description:
Target: scaffold0211; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 133 - 401
Target Start/End: Complemental strand, 26397 - 26129
Alignment:
| Q |
133 |
aacaaccatgtcaactagatccctcaccatatgcataattgctcatgtgtggctctttatgatcacaacatcagtagcacaaattgtcatagacacaagt |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| | |||||||||||||| || ||| |||| |||| |||| || ||||||| ||||||||| |
|
|
| T |
26397 |
aacaaccatgtcaactagatccctcaccatattcattctagctcatgtgtggcttttgatggcaacaaaatcaatagcccagtttgtcatcgacacaagt |
26298 |
T |
|
| Q |
233 |
ggcgaacccgttgaggacgatgaggaatacttcatcaggcctgctatcacaggcaatggaggaggttccattttggtcaccagaaatgggccatgccctt |
332 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||| |||||||||||||||||| |
|
|
| T |
26297 |
ggcgaacccgttgaggacgacgaggaatacttcatcaggcctgctatcacaggcaatggaggaggtttcactttgatcaccggaaatgggccatgccctt |
26198 |
T |
|
| Q |
333 |
tgcatgttggtcttgggaacagtgaagggacacttggaatggctgtgaaattcactcctttcgctcctc |
401 |
Q |
| |
|
|| |||||||||||| |||| |||||||||||||||| |||||||||| ||||||||||| ||||||| |
|
|
| T |
26197 |
tgaatgttggtcttgacaacactgaagggacacttggagtggctgtgaagttcactccttttgctcctc |
26129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0100 (Bit Score: 145; Significance: 4e-76; HSPs: 2)
Name: scaffold0100
Description:
Target: scaffold0100; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 133 - 401
Target Start/End: Original strand, 33710 - 33978
Alignment:
| Q |
133 |
aacaaccatgtcaactagatccctcaccatatgcataattgctcatgtgtggctctttatgatcacaacatcagtagcacaaattgtcatagacacaagt |
232 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| ||| | |||||||| ||||| || ||| ||||||||| |||| || ||||||| ||||||||| |
|
|
| T |
33710 |
aacaactatgtcaactagatccctcaccatattcatcctagctcatgtttggcttttgatggcaacaacatcaatagctcagtttgtcatcgacacaagt |
33809 |
T |
|
| Q |
233 |
ggcgaacccgttgaggacgatgaggaatacttcatcaggcctgctatcacaggcaatggaggaggttccattttggtcaccagaaatgggccatgccctt |
332 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||| ||||||||| ||||||| |||||||||| |
|
|
| T |
33810 |
ggcgaacctgttgaggacgatgaggaatacttcattagacctgctatcacaggcaacggaggaggttccactttggtcacaggaaatggaccatgccctt |
33909 |
T |
|
| Q |
333 |
tgcatgttggtcttgggaacagtgaagggacacttggaatggctgtgaaattcactcctttcgctcctc |
401 |
Q |
| |
|
||||||||||||||| |||| |||||| ||||||||| |||||||||| ||||||||||| ||||||| |
|
|
| T |
33910 |
tgcatgttggtcttgacaacactgaaggaacacttggagtggctgtgaagttcactccttttgctcctc |
33978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0100; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 428 - 458
Target Start/End: Original strand, 33999 - 34029
Alignment:
| Q |
428 |
aggcttaacagagacttgagagtaacattcc |
458 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
33999 |
aggcttaacagagacttgagagtaacattcc |
34029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0084 (Bit Score: 143; Significance: 6e-75; HSPs: 1)
Name: scaffold0084
Description:
Target: scaffold0084; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 123 - 393
Target Start/End: Original strand, 16910 - 17180
Alignment:
| Q |
123 |
ataattaattaacaaccatgtcaactagatccctcaccatatgcataattgctcatgtgtggctctttatgatcacaacatcagtagcacaaattgtcat |
222 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| ||| | |||||||||||||| || ||| |||| |||| |||| || ||||||| |
|
|
| T |
16910 |
ataatcaattaacaaccatgtcaactagatccctcaccatattcattctagctcatgtgtggcttttgatggcaacaaaatcattagcccagtttgtcat |
17009 |
T |
|
| Q |
223 |
agacacaagtggcgaacccgttgaggacgatgaggaatacttcatcaggcctgctatcacaggcaatggaggaggttccattttggtcaccagaaatggg |
322 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| || ||| ||||| |||||||| |
|
|
| T |
17010 |
cgacacaagtggcgaacccgttgaggacgacgaggaatacttcattaggcctgctatcacaggcaatggaggaggtttcactttcatcaccggaaatggg |
17109 |
T |
|
| Q |
323 |
ccatgccctttgcatgttggtcttgggaacagtgaagggacacttggaatggctgtgaaattcactccttt |
393 |
Q |
| |
|
|||||||||||| |||||||||||| |||| |||||||||||||||| | ||||||| |||| |||||| |
|
|
| T |
17110 |
ccatgccctttgaatgttggtcttgacaacactgaagggacacttggagcgcctgtgaagttcattccttt |
17180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 93; Significance: 4e-45; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 123 - 295
Target Start/End: Complemental strand, 21371044 - 21370872
Alignment:
| Q |
123 |
ataattaattaacaaccatgtcaactagatccctcaccatatgcataattgctcatgtgtggctctttatgatcacaacatcagtagcacaaattgtcat |
222 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||||| ||| ||||| ||||||| || || |||| || |||||| |||| || ||||||| |
|
|
| T |
21371044 |
ataattaaataacaaccatgtcaactaaatccctcaccatattcatccttgctaatgtgtgtcttttgatgacaacgacatcaatagctcagtttgtcat |
21370945 |
T |
|
| Q |
223 |
agacacaagtggcgaacccgttgaggacgatgaggaatacttcatcaggcctgctatcacaggcaatggagga |
295 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
21370944 |
cgacacaagtggcgaaccagttgaggacgacgaggaatacttcatcaggcctgctatcactggcaatggagga |
21370872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 133 - 318
Target Start/End: Complemental strand, 21404268 - 21404083
Alignment:
| Q |
133 |
aacaaccatgtcaactagatccctcaccatatgcataattgctcatgtgtggctctttatgatcacaacatcagtagcacaaattgtcatagacacaagt |
232 |
Q |
| |
|
||||||||||||||||| |||| ||||||||| ||| ||||| |||||||||| || || | ||||||||| |||| || ||||||| |||||||| |
|
|
| T |
21404268 |
aacaaccatgtcaactatatccttcaccatattcatccttgctaatgtgtggcttttggtggtaacaacatcaatagctcagtttgtcatcgacacaagc |
21404169 |
T |
|
| Q |
233 |
ggcgaacccgttgaggacgatgaggaatacttcatcaggcctgctatcacaggcaatggaggaggttccattttggtcaccagaaa |
318 |
Q |
| |
|
|| ||||| |||||| | |||||||| ||||||||||| ||||||||||| ||||| |||||| || || ||| ||||||||||| |
|
|
| T |
21404168 |
ggtgaacctgttgagaatgatgaggattacttcatcagacctgctatcaccggcaacggaggaagtctcactttagtcaccagaaa |
21404083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 133 - 318
Target Start/End: Complemental strand, 21798760 - 21798575
Alignment:
| Q |
133 |
aacaaccatgtcaactagatccctcaccatatgcataattgctcatgtgtggctctttatgatcacaacatcagtagcacaaattgtcatagacacaagt |
232 |
Q |
| |
|
||||||||||||||||| |||| ||||||||| ||| ||||| |||||||||| || || | ||||||||| |||| || ||||||| |||||||| |
|
|
| T |
21798760 |
aacaaccatgtcaactatatccttcaccatattcatccttgctaatgtgtggcttttggtggtaacaacatcaatagctcagtttgtcatcgacacaagc |
21798661 |
T |
|
| Q |
233 |
ggcgaacccgttgaggacgatgaggaatacttcatcaggcctgctatcacaggcaatggaggaggttccattttggtcaccagaaa |
318 |
Q |
| |
|
|| ||||| |||||| | |||||||| ||||||||||| ||||||||||| ||||| |||||| || || ||| ||||||||||| |
|
|
| T |
21798660 |
ggtgaacctgttgagaatgatgaggattacttcatcagacctgctatcaccggcaacggaggaagtctcactttagtcaccagaaa |
21798575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 171 - 347
Target Start/End: Complemental strand, 21934889 - 21934713
Alignment:
| Q |
171 |
ttgctcatgtgtggctctttatgatcacaacatcagtagcacaaattgtcatagacacaagtggcgaacccgttgaggacgatgaggaatacttcatcag |
270 |
Q |
| |
|
||||||||||||| |||||||| | |||||| || |||| || ||||| | |||||| || ||||||||||| | ||| || |||||||||||| | |
|
|
| T |
21934889 |
ttgctcatgtgtgtctctttataacgacaacaacaatagctcagtttgtcttggacacagtcggagaacccgttgaaggcgacgaagaatacttcatccg |
21934790 |
T |
|
| Q |
271 |
gcctgctatcacaggcaatggaggaggttccattttggtcaccagaaatgggccatgccctttgcatgttggtcttg |
347 |
Q |
| |
|
|| | ||||||| ||| |||||| |||||| | |||||| |||||||| |||||||||| ||||||||||||| |
|
|
| T |
21934789 |
tccagttatcacaaacaaaggaggacgttccactatggtcagcagaaatgaatcatgccctttacatgttggtcttg |
21934713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 123 - 295
Target Start/End: Original strand, 44442502 - 44442674
Alignment:
| Q |
123 |
ataattaattaacaaccatgtcaactagatccctcaccatatgcataattgctcatgtgtggctctttatgatcacaacatcagtagcacaaattgtcat |
222 |
Q |
| |
|
|||| ||||||||||||||| | ||||||||| |||| || ||| ||||||||||||| |||| ||||||||||||||| |||| || | ||||| |
|
|
| T |
44442502 |
ataactaattaacaaccatgactactagatccttcacggtaatcattgttgctcatgtgtgtgtcttcatgatcacaacatcaatagctcagttggtcat |
44442601 |
T |
|
| Q |
223 |
agacacaagtggcgaacccgttgaggacgatgaggaatacttcatcaggcctgctatcacaggcaatggagga |
295 |
Q |
| |
|
|||||| | ||| ||||| ||||||| || ||| |||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
44442602 |
agacacgaatggtgaaccagttgaggccggtgacgaatacttcatcaggcctataatcacaggcaacggagga |
44442674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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