View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7380_low_1 (Length: 642)
Name: NF7380_low_1
Description: NF7380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7380_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 44093436 - 44093233
Alignment:
| Q |
1 |
ggtttggttgtaaacaatggttatccccaatgtggccatgtagacggacaaaacgagcagatttcacatttgaaggataccgctggcagccagaaaattg |
100 |
Q |
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| T |
44093436 |
ggtttggctgtaaacaatggttatccccaatgtggccatgtagacggacaaaacgagcagatttcacatttgaaggataccgctggcagccagaaaattg |
44093337 |
T |
|
| Q |
101 |
tgatgtgccagagtttgtttgacccatctgggttcttgaggaagtaggtataatcctttgttcttcatttaatcatgtatgtagttgttacgtttattca |
200 |
Q |
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| T |
44093336 |
tgatgtgccagagtttgtttgacgcatctgggttcttgaggaagtaggtataatcctttgttcttcatttaatcatgtatgtagttgttacgtttattca |
44093237 |
T |
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| Q |
201 |
ctga |
204 |
Q |
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|||| |
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| T |
44093236 |
ctga |
44093233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 434 - 628
Target Start/End: Complemental strand, 44093203 - 44093005
Alignment:
| Q |
434 |
agtatgcatgacaaaacaattgcattcattgggtagacaacagtttcaatctatgatgtgtatggtcactggtggacttgagaggccagaagttgaaaat |
533 |
Q |
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| T |
44093203 |
agtatgcatgacaaaacaattgcattcgttgggtagacaacagtttcaatctatgatgtgtatggtcactggtggacttgagaggccagaagttgaaaat |
44093104 |
T |
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| Q |
534 |
gttggatggtaatatggtcttgtaaaagcacgtggagctattattcctgacg----gatgggcttaccgatttccaaaaaccaatacgaccatcttata |
628 |
Q |
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| T |
44093103 |
gttggatggtaatatggtcttgtaaaagcacgtggagctattattcctgacggatcgatgggcttacagatttccaaaaaccaatatgaccatcttata |
44093005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 457 - 630
Target Start/End: Complemental strand, 39278738 - 39278565
Alignment:
| Q |
457 |
attcattgggtagacaacagtttcaatctatgatgtgtatggtcactggtggacttgagaggccagaagttgaaaatgttggatggtaatatggtcttgt |
556 |
Q |
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|||||||||| | ||||| ||||||||| |||||||||||| |||||||||| ||||| ||||||||| ||||||| |||||| | |||| |||||| |
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| T |
39278738 |
attcattgggccgtcaacaatttcaatctctgatgtgtatggccactggtggagaagagagtccagaagttcaaaatgtgggatgggagtatgatcttgt |
39278639 |
T |
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| Q |
557 |
aaaagcacgtggagctattattcctgacggatgggcttaccgatttccaaaaaccaatacgaccatcttatatt |
630 |
Q |
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| T |
39278638 |
aaaacaccgcggagctatacgtcctgatggctgggcttacaggtttaccaagactaataccaccatcttatatt |
39278565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 9 - 159
Target Start/End: Complemental strand, 39279188 - 39279042
Alignment:
| Q |
9 |
tgtaaacaatggttatccccaatgtggccatgtagacggacaaaacgagcagatttcacatttgaaggataccgctggcagccagaaaattgtgatgtgc |
108 |
Q |
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||||| || |||||||| |||||||| |||||||| |||| ||||| || |||| ||||||| |||||||||||||||||| | ||||||||| ||| |
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| T |
39279188 |
tgtaagcagtggttatcatcaatgtggtcatgtagaatgacacaacgaccaaatttttcatttgagggataccgctggcagccaaagaattgtgatatgc |
39279089 |
T |
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| Q |
109 |
cagagtttgtttgacccatctgggttcttgaggaagtaggtataatccttt |
159 |
Q |
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||| |||||||| |||| ||||||||| ||||||||||||| |||| |
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| T |
39279088 |
aaga----gtttgaccgatctaagttcttgagaaagtaggtataattcttt |
39279042 |
T |
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