View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7380_low_12 (Length: 442)
Name: NF7380_low_12
Description: NF7380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7380_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 19 - 425
Target Start/End: Complemental strand, 2165627 - 2165221
Alignment:
| Q |
19 |
gtgaatgccagatatgacaaataaactcaacagtttgcaagttaggaccacaccgcgccttgaaaccaccaagacagcagaaactcaccctacacggcgc |
118 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2165627 |
gtgaatgccagatatgacaaataaactcgacagtttgcaagttaggaccacaccgcgccttgaaaccaccaagacagcagaaactcaccctacacggcgc |
2165528 |
T |
|
| Q |
119 |
cgcttattcttaatgtcatcaaaaaactgatggatatcagcagcagaaattggcttggacgagtcggccgactcctgtcgtgaaacataacatataatca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2165527 |
cgcttattcttaatgtcatcaaaaaactgatggatatcagcagcagaaattggcttggacgagtcggccgactcctgtcgtgaaacataacatataatca |
2165428 |
T |
|
| Q |
219 |
aacaaccaattagagtcattaaacaaagcgatgaagaatgtatctatccatctgnnnnnnnnnnacaactgacttcactaaagatctagcagtgacaaaa |
318 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
2165427 |
aacaaccaattagagtgattaaacaaagcgatgaagaatgtatctatccatctgtttttttcttataactgacttcactaaagatctagcagtgacaaaa |
2165328 |
T |
|
| Q |
319 |
ctcaaaagtagtgaagaaatacatacatacaatacaataaattaatgcaataaagagaacataccaggaaagtgcggagcccgtccttcatatcttcaat |
418 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2165327 |
ctcaaaagtagtgaagaaatacatacatacaattcaataaattaatgcaataaagagaacataccaggaaagtgcgaagcccgtccttcatatcttcaat |
2165228 |
T |
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| Q |
419 |
gcccttc |
425 |
Q |
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||||||| |
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| T |
2165227 |
gcccttc |
2165221 |
T |
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