View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7380_low_13 (Length: 428)
Name: NF7380_low_13
Description: NF7380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7380_low_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 173; Significance: 7e-93; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 221 - 414
Target Start/End: Original strand, 6817309 - 6817506
Alignment:
| Q |
221 |
tcctatgtgacatgacaaattgctagtttgtgaagatttctaaactata----agagaagacaaataattaaaaatggagaaatactctttaccttatac |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6817309 |
tcctatgtgacatgacaaattgctagtttgtgaagatttctaaactatatataagagaagacaaataattaaaaatggagaaatactctttaccttatac |
6817408 |
T |
|
| Q |
317 |
cacttgtattcccactgcatttgcattgcagcaccaggtacacgccaaggcttaaaccgtctataagtagcagcaaggtgcaatgcactgttaccatt |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
6817409 |
cacttgtattcccactgcatttgcattgcagcaccaggtacacgccaaggcttaaaccttctataagtagcagcaaggtgcaatgcaccgttaccatt |
6817506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 230 - 414
Target Start/End: Original strand, 6809183 - 6809366
Alignment:
| Q |
230 |
acatgacaaattgctagtttgtgaagatttctaaactataagagaagacaaataattaaaaatggagaaatactctttaccttataccacttgtattccc |
329 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |||| | || | |||||| |||| ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
6809183 |
acatgacaaattgctagtttgtgaaaatttctaaattatagg-gagggtaaataactaaatatggagaaataatctttaccttataccacttgtattccc |
6809281 |
T |
|
| Q |
330 |
actgcatttgcattgcagcaccaggtacacgccaaggcttaaaccgtctataagtagcagcaaggtgcaatgcactgttaccatt |
414 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6809282 |
actgcatttgcattgccgcaccaggtacacgccaaggcttaaaccttctataagtagcagcaaggtgcaatgcactgttaccatt |
6809366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 18 - 145
Target Start/End: Original strand, 6817165 - 6817292
Alignment:
| Q |
18 |
aaaaccgaattgaactgcacctaaaataaccaaactgtgatagatagttcacaaattgaactgcaccaaactggttaagttcgtgaactgtcaattacag |
117 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6817165 |
aaaaccgaattgaactgcacctaaaagaaccaaactgtgacagatagttcacgaattgaactgcaccaaactggttaagttcgtgaactgtcaattacag |
6817264 |
T |
|
| Q |
118 |
ttcggttttctcagtgcggcttggttca |
145 |
Q |
| |
|
|| ||||||||||||||||||||||||| |
|
|
| T |
6817265 |
tttggttttctcagtgcggcttggttca |
6817292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 307 - 414
Target Start/End: Original strand, 6831902 - 6832009
Alignment:
| Q |
307 |
taccttataccacttgtattcccactgcatttgcattgcagcaccaggtacacgccaaggcttaaaccgtctataagtagcagcaaggtgcaatgcactg |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
6831902 |
taccttataccacttgtattcccactgcatttgcattgcagcaccgggcacacgccaaggcttaaacctcctataagtagcagcaagatgcaatgcactg |
6832001 |
T |
|
| Q |
407 |
ttaccatt |
414 |
Q |
| |
|
|||||||| |
|
|
| T |
6832002 |
ttaccatt |
6832009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University