View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7380_low_14 (Length: 427)
Name: NF7380_low_14
Description: NF7380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7380_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 20 - 405
Target Start/End: Original strand, 12096163 - 12096548
Alignment:
| Q |
20 |
ctaaggtggctaaattggggagtttgctaaagtaatcagggataggaccagttaggctgttccaattaagaaggacaaatttaaggtgaggaagtctagc |
119 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||| || |
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| T |
12096163 |
ctaaggtggctaaattggtaagtttgctaaagtaatcagggataggaccagttaggttgttccaattaaggaggacaaatttaaggtgaggcagtcttgc |
12096262 |
T |
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| Q |
120 |
aatggcttgaggaataggaccagtgaggttaggaaggaggcggaaaatgagggtctcgaggtaaggtagatcagcgatgaggggcgggattgtaccgaca |
219 |
Q |
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| T |
12096263 |
aatggcttgaggaataggacctgttaggttagggaggaggcgaaaaatgagggtctcgaggtaaggtagatcggcgatgagtggcgggattgtaccgaca |
12096362 |
T |
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| Q |
220 |
agatcatcagcgccatctatctcaaggaagttgacacgatggatggttgtttttgggattttcttgcatgagactatacgccatttgcaacagtctgtgt |
319 |
Q |
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| T |
12096363 |
agatcatcagcgccatctatctcaaggaagttgacacgatggatggttgtttttgggattttcttgcatgagactatacgccatttgcaacagtctgtgt |
12096462 |
T |
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| Q |
320 |
ttgggatccaggttgagaagaggcttgtattgtggaagtaatatttgatcttgaggaggactttttcgtcgtctgggtggcagagg |
405 |
Q |
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| T |
12096463 |
gtgggatccaggttgagaagaggcttgtattgtggaagtaatctttgatcttgaggaggactttttcgtcgtctgggtggcagagg |
12096548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 20 - 415
Target Start/End: Original strand, 12079523 - 12079918
Alignment:
| Q |
20 |
ctaaggtggctaaattggggagtttgctaaagtaatcagggataggaccagttaggctgttccaattaagaaggacaaatttaaggtgaggaagtctagc |
119 |
Q |
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| T |
12079523 |
ctaaggtggctaaattggttagtttgctaaagtaatcagggataggaccagttaggttgttccaattaaggaggacaaatttaaggtgaggcagtcttgc |
12079622 |
T |
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| Q |
120 |
aatggcttgaggaataggaccagtgaggttaggaaggaggcggaaaatgagggtctcgaggtaaggtagatcagcgatgaggggcgggattgtaccgaca |
219 |
Q |
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||||||||||||||||||||| || |||||||| |||||||| ||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||| |
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| T |
12079623 |
aatggcttgaggaataggacctgttaggttaggtaggaggcgtaaaatgagggtctcgaggtaaggtagatcggcgatgagtggcggtattgtaccgaca |
12079722 |
T |
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| Q |
220 |
agatcatcagcgccatctatctcaaggaagttgacacgatggatggttgtttttgggattttcttgcatgagactatacgccatttgcaacagtctgtgt |
319 |
Q |
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| T |
12079723 |
agatcatcagcaccatctatctcaaggaagttgacacgatggatggttgtttttgggattttcttgcatgagactatacgccatttgcaacagtctgtgt |
12079822 |
T |
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| Q |
320 |
ttgggatccaggttgagaagaggcttgtattgtggaagtaatatttgatcttgaggaggactttttcgtcgtctgggtggcagaggcgcgggcgtg |
415 |
Q |
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| T |
12079823 |
gtgggatccaggttgagaagaggcttgtattgtggaagtaatctttgatcttgaggaggactttttcgtcgtctgggtggcagaggcgtgggcgtg |
12079918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 20 - 402
Target Start/End: Complemental strand, 1249103 - 1248721
Alignment:
| Q |
20 |
ctaaggtggctaaattggggagtttgctaaagtaatcagggataggaccagttaggctgttccaattaagaaggacaaatttaaggtgaggaagtctagc |
119 |
Q |
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|||| ||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||| ||||| |||||||| ||||||||||||||| | || |
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| T |
1249103 |
ctaaagtggctaaattggtgagcttgctaaagtaatcagggataggaccggttaggctgttccagttaaggaggacaaagttaaggtgaggaagtttcgc |
1249004 |
T |
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| Q |
120 |
aatggcttgaggaataggaccagtgaggttaggaaggaggcggaaaatgagggtctcgaggtaaggtagatcagcgatgaggggcgggattgtaccgaca |
219 |
Q |
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|||||||||||| |||||||| ||||||||||| ||| |||||| ||||||||||| ||||| ||||| ||||| ||||| || ||||| |||||||| |
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| T |
1249003 |
aatggcttgagggataggaccggtgaggttagggaggttgcggaatatgagggtctccaggtatggtaggtcagcaatgagtggggggatcgtaccgacg |
1248904 |
T |
|
| Q |
220 |
agatcatcagcgccatctatctcaaggaagttgacacgatggatggttgtttttgggattttcttgcatgagactatacgccatttgcaacagtctgtgt |
319 |
Q |
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|| |||||||| || || ||||| |||||||||||||| | ||| |||||||||||||||||||||||| ||||||| |||||||||||||| ||||| | |
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| T |
1248903 |
aggtcatcagcaccgtcgatctcgaggaagttgacacggtagattgttgtttttgggattttcttgcataagactatgcgccatttgcaacaatctgttt |
1248804 |
T |
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| Q |
320 |
ttgggatccaggttgagaagaggcttgtattgtggaagtaatatttgatcttgaggaggactttttcgtcgtctgggtggcag |
402 |
Q |
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|||| ||||||||||||||||||||||||||||||| | | |||||| ||||||||||||||||||||||| ||||||||| |
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| T |
1248803 |
ttggagtccaggttgagaagaggcttgtattgtggaaatggtctttgattttgaggaggactttttcgtcgtcggggtggcag |
1248721 |
T |
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