View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7380_low_15 (Length: 413)

Name: NF7380_low_15
Description: NF7380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7380_low_15
NF7380_low_15
[»] chr6 (45 HSPs)
chr6 (18-401)||(2732893-2733276)
chr6 (279-359)||(14399814-14399893)
chr6 (249-360)||(1912458-1912569)
chr6 (279-397)||(33532473-33532590)
chr6 (301-397)||(2457180-2457273)
chr6 (291-379)||(28640488-28640576)
chr6 (279-369)||(11602521-11602611)
chr6 (258-374)||(7939859-7939975)
chr6 (298-369)||(9163745-9163816)
chr6 (298-364)||(26373077-26373143)
chr6 (266-343)||(9074105-9074182)
chr6 (298-358)||(9194433-9194493)
chr6 (262-321)||(33282734-33282793)
chr6 (296-354)||(653351-653409)
chr6 (279-357)||(770343-770421)
chr6 (296-334)||(2231090-2231128)
chr6 (270-344)||(14933137-14933211)
chr6 (295-373)||(21869848-21869926)
chr6 (279-369)||(29243074-29243164)
chr6 (297-331)||(33735435-33735469)
chr6 (289-374)||(1906845-1906930)
chr6 (279-356)||(2766868-2766945)
chr6 (311-364)||(4886204-4886257)
chr6 (297-370)||(8432017-8432090)
chr6 (298-358)||(264555-264615)
chr6 (284-356)||(6012248-6012320)
chr6 (295-351)||(14933023-14933079)
chr6 (291-375)||(33996332-33996416)
chr6 (279-326)||(739704-739751)
chr6 (293-356)||(5730189-5730252)
chr6 (279-326)||(19390976-19391023)
chr6 (237-308)||(30532117-30532188)
chr6 (262-321)||(33260438-33260497)
chr6 (291-342)||(33851279-33851330)
chr6 (312-358)||(3736992-3737038)
chr6 (300-358)||(26494408-26494466)
chr6 (302-372)||(31322632-31322702)
chr6 (298-372)||(31694723-31694797)
chr6 (262-324)||(33386192-33386254)
chr6 (336-401)||(2496383-2496447)
chr6 (292-325)||(4354338-4354371)
chr6 (259-324)||(9075206-9075271)
chr6 (307-360)||(29404955-29405008)
chr6 (289-326)||(32392369-32392406)
chr6 (298-358)||(24769309-24769369)
[»] chr1 (38 HSPs)
chr1 (289-372)||(15606321-15606404)
chr1 (274-358)||(7347693-7347777)
chr1 (279-358)||(6025952-6026031)
chr1 (290-360)||(17473136-17473206)
chr1 (297-374)||(52517064-52517141)
chr1 (297-364)||(30882449-30882515)
chr1 (298-372)||(44417783-44417857)
chr1 (233-358)||(43391470-43391595)
chr1 (289-358)||(47847982-47848050)
chr1 (289-355)||(3240482-3240548)
chr1 (235-397)||(15794004-15794165)
chr1 (290-358)||(15955893-15955961)
chr1 (300-356)||(32868272-32868328)
chr1 (298-353)||(33651660-33651715)
chr1 (289-351)||(15592675-15592737)
chr1 (279-329)||(26161587-26161637)
chr1 (289-358)||(3950673-3950742)
chr1 (279-360)||(7991516-7991597)
chr1 (289-358)||(15923758-15923827)
chr1 (270-375)||(26360296-26360401)
chr1 (297-358)||(32721421-32721482)
chr1 (307-358)||(11766188-11766237)
chr1 (274-358)||(12764017-12764101)
chr1 (290-374)||(28067473-28067557)
chr1 (281-352)||(400901-400972)
chr1 (289-364)||(11049047-11049122)
chr1 (297-344)||(46331109-46331156)
chr1 (292-358)||(3335145-3335211)
chr1 (298-355)||(4541583-4541638)
chr1 (297-371)||(15190855-15190929)
chr1 (279-355)||(15364936-15365009)
chr1 (295-345)||(19392212-19392262)
chr1 (291-369)||(50322030-50322108)
chr1 (297-358)||(14643201-14643262)
chr1 (301-358)||(15956878-15956935)
chr1 (297-353)||(1880082-1880137)
chr1 (298-358)||(46937570-46937630)
chr1 (301-373)||(48432631-48432703)
[»] chr7 (38 HSPs)
chr7 (290-374)||(7245942-7246026)
chr7 (291-372)||(6894305-6894386)
chr7 (290-360)||(1110401-1110471)
chr7 (289-358)||(38774312-38774381)
chr7 (279-354)||(24942499-24942574)
chr7 (297-371)||(2219525-2219599)
chr7 (236-358)||(30900051-30900173)
chr7 (304-358)||(39417762-39417816)
chr7 (289-358)||(23747323-23747392)
chr7 (258-358)||(38921262-38921362)
chr7 (302-360)||(1109354-1109412)
chr7 (296-358)||(13380906-13380968)
chr7 (290-344)||(21451517-21451571)
chr7 (248-358)||(23218571-23218681)
chr7 (319-372)||(400623-400676)
chr7 (289-326)||(5260422-5260459)
chr7 (301-358)||(21450959-21451016)
chr7 (295-343)||(8095907-8095955)
chr7 (298-358)||(23117360-23117420)
chr7 (279-343)||(44124546-44124610)
chr7 (279-358)||(1662624-1662703)
chr7 (279-326)||(10455094-10455141)
chr7 (237-324)||(24673364-24673451)
chr7 (294-357)||(33007893-33007955)
chr7 (297-356)||(37233722-37233781)
chr7 (289-372)||(38622871-38622954)
chr7 (302-372)||(7982345-7982415)
chr7 (314-372)||(21343694-21343752)
chr7 (301-371)||(25268805-25268875)
chr7 (298-340)||(30885321-30885363)
chr7 (278-360)||(33581726-33581808)
chr7 (290-324)||(40869547-40869581)
chr7 (300-365)||(30408257-30408321)
chr7 (279-372)||(31838837-31838929)
chr7 (297-358)||(32231762-32231823)
chr7 (278-331)||(32888963-32889016)
chr7 (289-322)||(34925312-34925345)
chr7 (299-371)||(25314032-25314104)
[»] chr5 (40 HSPs)
chr5 (297-372)||(11257714-11257789)
chr5 (289-366)||(21047059-21047136)
chr5 (309-358)||(39647139-39647188)
chr5 (258-358)||(7430118-7430218)
chr5 (294-358)||(27731590-27731654)
chr5 (289-372)||(39159727-39159810)
chr5 (289-370)||(16973824-16973905)
chr5 (231-371)||(34156643-34156783)
chr5 (294-358)||(41894417-41894481)
chr5 (290-392)||(40677960-40678061)
chr5 (297-359)||(41015003-41015065)
chr5 (289-358)||(6202589-6202658)
chr5 (249-397)||(6586482-6586627)
chr5 (297-358)||(33342728-33342789)
chr5 (291-372)||(41991173-41991254)
chr5 (301-374)||(43283418-43283491)
chr5 (233-344)||(9446286-9446400)
chr5 (297-373)||(31029562-31029638)
chr5 (298-366)||(40990949-40991017)
chr5 (335-397)||(8977426-8977485)
chr5 (301-372)||(16033019-16033090)
chr5 (289-372)||(29466168-29466250)
chr5 (299-333)||(17855226-17855260)
chr5 (288-358)||(18551479-18551549)
chr5 (336-374)||(18839185-18839223)
chr5 (298-360)||(19115099-19115160)
chr5 (300-358)||(20981270-20981328)
chr5 (290-360)||(40213882-40213951)
chr5 (289-359)||(41376333-41376402)
chr5 (329-358)||(1792110-1792139)
chr5 (299-364)||(7477556-7477621)
chr5 (289-358)||(14956693-14956762)
chr5 (297-358)||(38346862-38346923)
chr5 (312-365)||(39647243-39647296)
chr5 (289-333)||(631483-631527)
chr5 (249-325)||(4787945-4788021)
chr5 (301-333)||(13996378-13996410)
chr5 (292-344)||(34451993-34452045)
chr5 (295-355)||(37056370-37056430)
chr5 (297-325)||(41399570-41399598)
[»] chr2 (37 HSPs)
chr2 (251-336)||(27317996-27318081)
chr2 (302-369)||(33958230-33958297)
chr2 (289-359)||(26174925-26174994)
chr2 (279-360)||(11530027-11530108)
chr2 (298-357)||(41631885-41631944)
chr2 (279-354)||(42616723-42616798)
chr2 (269-363)||(17442941-17443035)
chr2 (294-374)||(44458225-44458305)
chr2 (295-358)||(4204949-4205011)
chr2 (287-342)||(18569435-18569490)
chr2 (258-365)||(31790447-31790554)
chr2 (296-367)||(39597568-39597639)
chr2 (302-372)||(20547095-20547165)
chr2 (270-358)||(2045047-2045133)
chr2 (301-359)||(11328128-11328188)
chr2 (298-343)||(28044715-28044760)
chr2 (289-358)||(28804336-28804405)
chr2 (280-321)||(32321501-32321542)
chr2 (297-346)||(33971657-33971706)
chr2 (273-325)||(3110516-3110568)
chr2 (288-372)||(20265521-20265605)
chr2 (290-358)||(29378509-29378577)
chr2 (289-353)||(29728763-29728827)
chr2 (294-325)||(12749997-12750028)
chr2 (298-360)||(16733711-16733773)
chr2 (298-352)||(29415748-29415802)
chr2 (290-332)||(31235209-31235251)
chr2 (297-358)||(18104051-18104112)
chr2 (289-358)||(25694401-25694470)
chr2 (296-325)||(44460364-44460393)
chr2 (290-330)||(31246953-31246993)
chr2 (279-359)||(32562372-32562450)
chr2 (298-358)||(33623675-33623735)
chr2 (282-330)||(35538056-35538104)
chr2 (298-326)||(36300414-36300442)
chr2 (289-365)||(38475860-38475936)
chr2 (294-358)||(42172801-42172865)
[»] chr3 (34 HSPs)
chr3 (289-357)||(25252041-25252109)
chr3 (298-370)||(32251006-32251078)
chr3 (279-354)||(50402635-50402710)
chr3 (289-358)||(43381176-43381245)
chr3 (294-358)||(15802573-15802637)
chr3 (289-372)||(38692427-38692510)
chr3 (258-333)||(50251516-50251591)
chr3 (297-344)||(53855744-53855791)
chr3 (297-375)||(21754221-21754299)
chr3 (299-356)||(25490545-25490602)
chr3 (304-372)||(14199985-14200053)
chr3 (298-374)||(48236287-48236363)
chr3 (298-372)||(10275819-10275894)
chr3 (298-360)||(2990983-2991045)
chr3 (298-364)||(6994327-6994393)
chr3 (297-358)||(11338510-11338573)
chr3 (313-357)||(16169188-16169232)
chr3 (269-356)||(29279205-29279293)
chr3 (278-358)||(31386057-31386136)
chr3 (304-356)||(51295684-51295736)
chr3 (297-345)||(54842196-54842244)
chr3 (300-343)||(27016927-27016970)
chr3 (298-356)||(20690081-20690139)
chr3 (279-337)||(42064160-42064218)
chr3 (312-373)||(48198079-48198141)
chr3 (278-363)||(1813265-1813349)
chr3 (299-360)||(24830135-24830196)
chr3 (290-375)||(32954243-32954328)
chr3 (292-325)||(39544175-39544208)
chr3 (270-343)||(43307600-43307673)
chr3 (289-322)||(50376231-50376264)
chr3 (298-358)||(162903-162963)
chr3 (298-358)||(29208265-29208325)
chr3 (297-325)||(34363256-34363284)
[»] chr8 (39 HSPs)
chr8 (297-354)||(33120560-33120617)
chr8 (298-358)||(2302706-2302766)
chr8 (260-372)||(27483037-27483149)
chr8 (268-358)||(30560088-30560179)
chr8 (294-372)||(26273036-26273114)
chr8 (297-358)||(8282849-8282910)
chr8 (279-372)||(21226911-21227004)
chr8 (289-374)||(37632120-37632205)
chr8 (297-358)||(45371098-45371159)
chr8 (290-373)||(4050427-4050511)
chr8 (291-374)||(27400521-27400604)
chr8 (279-337)||(13869826-13869884)
chr8 (297-355)||(30692459-30692517)
chr8 (279-360)||(29749219-29749300)
chr8 (258-326)||(3556650-3556718)
chr8 (293-397)||(24857327-24857430)
chr8 (279-363)||(40710077-40710160)
chr8 (280-370)||(13850991-13851079)
chr8 (317-360)||(18737690-18737733)
chr8 (299-370)||(24855531-24855602)
chr8 (279-354)||(26445499-26445574)
chr8 (298-357)||(32616769-32616828)
chr8 (290-325)||(44617697-44617732)
chr8 (298-364)||(9112412-9112478)
chr8 (289-359)||(12196923-12196992)
chr8 (289-359)||(12441351-12441420)
chr8 (279-372)||(2701657-2701749)
chr8 (297-358)||(4114736-4114796)
chr8 (300-369)||(14928232-14928301)
chr8 (295-324)||(16950289-16950318)
chr8 (298-359)||(42843363-42843424)
chr8 (297-358)||(44806258-44806319)
chr8 (279-374)||(1318620-1318716)
chr8 (310-358)||(3238297-3238345)
chr8 (305-369)||(8284356-8284420)
chr8 (299-374)||(12856408-12856481)
chr8 (289-373)||(14730294-14730378)
chr8 (279-351)||(39550949-39551021)
chr8 (290-374)||(43935142-43935226)
[»] chr4 (45 HSPs)
chr4 (289-358)||(415145-415214)
chr4 (300-361)||(55314493-55314554)
chr4 (298-358)||(13298529-13298589)
chr4 (289-364)||(50794568-50794643)
chr4 (279-345)||(34581592-34581658)
chr4 (299-352)||(2843583-2843636)
chr4 (279-358)||(3301608-3301687)
chr4 (227-358)||(7295045-7295176)
chr4 (293-372)||(17223403-17223482)
chr4 (301-372)||(20709960-20710031)
chr4 (289-372)||(25402826-25402909)
chr4 (286-349)||(31675030-31675093)
chr4 (292-358)||(27722407-27722473)
chr4 (291-353)||(34417827-34417889)
chr4 (280-325)||(3144541-3144586)
chr4 (298-358)||(37538421-37538484)
chr4 (297-358)||(37579590-37579651)
chr4 (298-363)||(48244443-48244508)
chr4 (278-323)||(56049770-56049815)
chr4 (297-337)||(1202394-1202434)
chr4 (290-374)||(1276902-1276986)
chr4 (290-358)||(2562482-2562550)
chr4 (289-325)||(20989525-20989561)
chr4 (248-372)||(39032511-39032635)
chr4 (291-374)||(13458783-13458866)
chr4 (290-325)||(18968308-18968343)
chr4 (298-356)||(19062218-19062274)
chr4 (333-372)||(39064896-39064935)
chr4 (289-356)||(47789165-47789232)
chr4 (291-357)||(26275534-26275600)
chr4 (298-364)||(33714228-33714294)
chr4 (291-345)||(34417346-34417400)
chr4 (305-359)||(38596717-38596771)
chr4 (297-326)||(4762551-4762580)
chr4 (305-358)||(9318706-9318759)
chr4 (336-401)||(27098969-27099033)
chr4 (297-358)||(47486045-47486106)
chr4 (291-356)||(53768201-53768266)
chr4 (298-342)||(681986-682030)
chr4 (312-372)||(3625744-3625804)
chr4 (258-334)||(8721885-8721961)
chr4 (298-358)||(30617270-30617329)
chr4 (298-358)||(34416907-34416967)
chr4 (289-333)||(37854003-37854047)
chr4 (289-325)||(41367197-41367233)
[»] scaffold0428 (2 HSPs)
scaffold0428 (262-321)||(11459-11518)
scaffold0428 (262-321)||(4494-4553)
[»] scaffold0940 (1 HSPs)
scaffold0940 (291-373)||(2031-2113)
[»] scaffold0491 (1 HSPs)
scaffold0491 (317-360)||(4389-4432)
[»] scaffold0041 (1 HSPs)
scaffold0041 (290-324)||(96701-96735)
[»] scaffold0898 (1 HSPs)
scaffold0898 (297-358)||(534-594)
[»] scaffold0223 (1 HSPs)
scaffold0223 (227-358)||(10608-10740)
[»] scaffold0194 (1 HSPs)
scaffold0194 (290-358)||(13786-13854)


Alignment Details
Target: chr6 (Bit Score: 372; Significance: 0; HSPs: 45)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 18 - 401
Target Start/End: Complemental strand, 2733276 - 2732893
Alignment:
Q  18 aagattggtatacatgcttgtgagaatatagtaatgagtgtatattgtaaactttgctttgcattatttctgttggaagctttgcatgatccattttcaa 117  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2733276 aagattggtatacatgcttgtgagaatatattaatgagtgtatattgtaaactttgctttgcattatttctgttggaagctttgcatgatccattttcaa 2733177  T
Q  118 agggtcaatgtgtcatttgatggccaaagttagagatatctccgtgctacaatctgtgtttatatattcactattaagggctgttttactgattgtatgt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2733176 agggtcaatgtgtcatttgatggccaaagttagagatatctccgtgctacaatctgtgtttatatattcactattaagggctgttttactgattgtatgt 2733077  T
Q  218 gatacaatgttgtcaatcgcagaagatagtagtttgtttgaattccgctatacaatagtattatagcgcctctatagctgctatttgacaacattttgta 317  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2733076 gatacattgttgtcaatcgcagaagatagtagtttgtttgaattccgctatacaatagtattatagcgcctctatagctgctatttgacaacattttgta 2732977  T
Q  318 ctaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctatagtggctataacgccgctatttaacaatatt 401  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2732976 ctaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctatagtggctataatgccgctatttaacaatatt 2732893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 279 - 359
Target Start/End: Complemental strand, 14399893 - 14399814
Alignment:
Q  279 tatagcgcctctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaattt 359  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||| |||||| ||||||    
T  14399893 tatagagcctctatagctgctatttgacaacactttgtactaaatagc-tatcacaaaacaatagcggtttgtttaaattt 14399814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 249 - 360
Target Start/End: Original strand, 1912458 - 1912569
Alignment:
Q  249 gtttgtttgaattccgctatacaatagtattatagcgcctctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatt 348  Q
    |||||||  ||||||||||| |||  ||  ||||||| | ||||||  |||||||||||| | |||||||||||||| |||||||| |||||||||||||    
T  1912458 gtttgttcaaattccgctatgcaacggtgctatagcgtcactatagtcgctatttgacaataatttgtactaaatagtatatcgcagaacaatagcgatt 1912557  T
Q  349 tgttcaaatttc 360  Q
    ||||||||||||    
T  1912558 tgttcaaatttc 1912569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 279 - 397
Target Start/End: Original strand, 33532473 - 33532590
Alignment:
Q  279 tatagcgcctctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctatagtggcta 378  Q
    ||||||||  ||||||||||| |||||||||||| ||||||||||||| ||| |   |||||| ||||||||||||||||    ||||||||||| ||||    
T  33532473 tatagcgcaactatagctgctgtttgacaacattctgtactaaatagcgtatagtgtaacaatggcgatttgttcaaattctgttacgctatagt-gcta 33532571  T
Q  379 taacgccgctatttaacaa 397  Q
    || ||||||||| ||||||    
T  33532572 tagcgccgctatctaacaa 33532590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 301 - 397
Target Start/End: Complemental strand, 2457273 - 2457180
Alignment:
Q  301 tttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctatagtggctataacgccgctatttaacaa 397  Q
    ||||||||||||||||||||||||||||||| |||||||||||   ||| |||||||| |||||| ||||| | ||||||  |||||||||||||||    
T  2457273 tttgacaacattttgtactaaatagcatatcacaaaacaatagtcgttttttcaaattccactacactatact-gctata--gccgctatttaacaa 2457180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 291 - 379
Target Start/End: Complemental strand, 28640576 - 28640488
Alignment:
Q  291 atagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctatagtggctat 379  Q
    ||||| ||||||||||| |||||||||| ||| ||| ||| ||| ||||||| |||| |||||||||||||||| ||||||| ||||||    
T  28640576 atagccgctatttgacagcattttgtacgaaacagcgtattgcagaacaatatcgatctgttcaaatttcactatgctatagcggctat 28640488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 279 - 369
Target Start/End: Original strand, 11602521 - 11602611
Alignment:
Q  279 tatagcgcctctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgcta 369  Q
    ||||||||  ||| |||| ||||||||||||| ||| |||||||| |  | |  |||||||||||||||||||||||||||||||||||||    
T  11602521 tatagcgcagctaaagcttctatttgacaacactttatactaaattgtttgttacaaaacaatagcgatttgttcaaatttcactacgcta 11602611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 258 - 374
Target Start/End: Complemental strand, 7939975 - 7939859
Alignment:
Q  258 aattccgctatacaatagtattatagcgcctctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaat 357  Q
    ||||||||||| | | |||  ||||| ||| ||||||| ||||||||||| || |||||||| |||||  |||| || |||||||| |||||  ||||||    
T  7939975 aattccgctatgctacagtgctatagagccactatagccgctatttgacatcactttgtactgaatagagtatctcagaacaatagtgatttaatcaaat 7939876  T
Q  358 ttcactacgctatagtg 374  Q
    |||| ||||||||||||    
T  7939875 ttcattacgctatagtg 7939859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 298 - 369
Target Start/End: Complemental strand, 9163816 - 9163745
Alignment:
Q  298 ctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgcta 369  Q
    ||||||||||||||||||||||||||||| |||  |  |||||||| |||||||||||||||  ||||||||    
T  9163816 ctatttgacaacattttgtactaaatagcgtataacggaacaatagggatttgttcaaatttttctacgcta 9163745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 298 - 364
Target Start/End: Complemental strand, 26373143 - 26373077
Alignment:
Q  298 ctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcacta 364  Q
    ||||||||||||| ||||||||||||||| |||| || |||||||| || |||||||| ||||||||    
T  26373143 ctatttgacaacactttgtactaaatagcgtatcacagaacaatagtgagttgttcaattttcacta 26373077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 343
Target Start/End: Original strand, 9074105 - 9074182
Alignment:
Q  266 tatacaatagtattatagcgcctctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatag 343  Q
    ||||||| |||  ||||||||| |||||||  |||||||| ||||||||||| |||||||  ||||||||||||||||    
T  9074105 tatacaacagtgctatagcgccgctatagcctctatttgataacattttgtagtaaatagtgtatcgcaaaacaatag 9074182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 298 - 358
Target Start/End: Original strand, 9194433 - 9194493
Alignment:
Q  298 ctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt 358  Q
    ||||||||||||||||||||||||||| | ||| ||| ||||||||| |||||||| ||||    
T  9194433 ctatttgacaacattttgtactaaataccgtatagcagaacaatagcaatttgttccaatt 9194493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 262 - 321
Target Start/End: Complemental strand, 33282793 - 33282734
Alignment:
Q  262 ccgctatacaatagtattatagcgcctctatagctgctatttgacaacattttgtactaa 321  Q
    |||||| |||||||| |||||||||| |||||| |||||||| ||||||||||| |||||    
T  33282793 ccgctacacaatagttttatagcgccactatagatgctatttcacaacattttgcactaa 33282734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 354
Target Start/End: Complemental strand, 653409 - 653351
Alignment:
Q  296 tgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttca 354  Q
    ||||||||||||||| ||||| |||||||||||||| || | ||||| |||||||||||    
T  653409 tgctatttgacaacagtttgtgctaaatagcatatcacatatcaataccgatttgttca 653351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 357
Target Start/End: Complemental strand, 770421 - 770343
Alignment:
Q  279 tatagcgcctctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaat 357  Q
    ||||||||| ||  ||| |||||||||||||  ||||||||||||||| |||| |  ||||||| ||||||||||||||    
T  770421 tatagcgccactgcagccgctatttgacaaccctttgtactaaatagcgtatcacggaacaataccgatttgttcaaat 770343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 334
Target Start/End: Original strand, 2231090 - 2231128
Alignment:
Q  296 tgctatttgacaacattttgtactaaatagcatatcgca 334  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  2231090 tgctattggacaacattttgtactaaatagcatatcgca 2231128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 344
Target Start/End: Complemental strand, 14933211 - 14933137
Alignment:
Q  270 caatagtattatagcgcctctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagc 344  Q
    ||||||| |||||||||| ||||| | ||||| |||||||| ||||||||||| ||  ||||||| |||||||||    
T  14933211 caatagtgttatagcgccactatatccgctatctgacaacaatttgtactaaagagtgtatcgcagaacaatagc 14933137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 373
Target Start/End: Complemental strand, 21869926 - 21869848
Alignment:
Q  295 ctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctatagt 373  Q
    |||||||||||||||||||||||||||||||  |||| |  |||||||  ||||||||| ||||   ||||||||||||    
T  21869926 ctgctatttgacaacattttgtactaaatagtgtatcacggaacaataatgatttgttcgaattctgctacgctatagt 21869848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 369
Target Start/End: Original strand, 29243074 - 29243164
Alignment:
Q  279 tatagcgcctctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgcta 369  Q
    ||||||||| ||||||| || ||||||| | ||||| || |||||||  |||| || |||||||| || ||||||||||| ||||||||||    
T  29243074 tatagcgccactatagccgcaatttgactagattttatattaaatagtgtatcccagaacaatagagaattgttcaaattccactacgcta 29243164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 297 - 331
Target Start/End: Original strand, 33735435 - 33735469
Alignment:
Q  297 gctatttgacaacattttgtactaaatagcatatc 331  Q
    |||||||||||||||||||||||||||||||||||    
T  33735435 gctatttgacaacattttgtactaaatagcatatc 33735469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 374
Target Start/End: Original strand, 1906845 - 1906930
Alignment:
Q  289 ctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctatagtg 374  Q
    |||| |||||||||||| |||| |||||||||||||   | | ||| |||||||| |||||||||||||| |||| | ||||||||    
T  1906845 ctatcgctgctatttgataacaatttgtactaaatattttgttgcagaacaatagtgatttgttcaaattccactgcactatagtg 1906930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 279 - 356
Target Start/End: Complemental strand, 2766945 - 2766868
Alignment:
Q  279 tatagcgcctctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaa 356  Q
    ||||| || ||||| ||| ||||||||||| ||||| ||||||||| | |||| || |||||||| ||||||||||||    
T  2766945 tatagtgcttctatggctactatttgacaatattttatactaaataacgtatcacataacaatagagatttgttcaaa 2766868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 311 - 364
Target Start/End: Complemental strand, 4886257 - 4886204
Alignment:
Q  311 ttttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcacta 364  Q
    ||||| |||||||||||||||||  |||||||| |||||||||||||| |||||    
T  4886257 ttttgcactaaatagcatatcgcggaacaatagagatttgttcaaattccacta 4886204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 297 - 370
Target Start/End: Complemental strand, 8432090 - 8432017
Alignment:
Q  297 gctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctat 370  Q
    ||||||||||| || |||||||||| |||||| | ||  || |||||||||||||||||||||  |||||||||    
T  8432090 gctatttgacagcactttgtactaattagcatcttgctgaataatagcgatttgttcaaattttgctacgctat 8432017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 358
Target Start/End: Complemental strand, 264615 - 264555
Alignment:
Q  298 ctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt 358  Q
    ||||||||||||| ||||||||||||||| || | || ||||||| | |||||||||||||    
T  264615 ctatttgacaacactttgtactaaatagcctaccacagaacaataacaatttgttcaaatt 264555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 356
Target Start/End: Complemental strand, 6012320 - 6012248
Alignment:
Q  284 cgcctctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaa 356  Q
    |||| ||| |||||||||||||||||| |||| |||||||||  |||| || | |||||||||| ||||||||    
T  6012320 cgccgctaaagctgctatttgacaacagtttgaactaaatagagtatcacagagcaatagcgatgtgttcaaa 6012248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 351
Target Start/End: Original strand, 14933023 - 14933079
Alignment:
Q  295 ctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgt 351  Q
    ||||||| |||||||||||||||||||||||  ||| ||| |||||||||| |||||    
T  14933023 ctgctatctgacaacattttgtactaaatagtgtattgcagaacaatagcggtttgt 14933079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 375
Target Start/End: Original strand, 33996332 - 33996416
Alignment:
Q  291 atagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctatagtgg 375  Q
    ||||| |||||| |||||||||||||| |||| |||  || ||  |||||||||| |||||||||||| | ||||||| ||||||    
T  33996332 atagcagctattagacaacattttgtagtaaaaagcggattgcggaacaatagcggtttgttcaaattccgctacgctttagtgg 33996416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 326
Target Start/End: Complemental strand, 739751 - 739704
Alignment:
Q  279 tatagcgcctctatagctgctatttgacaacattttgtactaaatagc 326  Q
    ||||| ||| |||||||||||||||||||| ||||||||||| |||||    
T  739751 tatagtgccactatagctgctatttgacaatattttgtactatatagc 739704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 293 - 356
Target Start/End: Original strand, 5730189 - 5730252
Alignment:
Q  293 agctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaa 356  Q
    |||| ||||||||||| ||||||||||||||||||||||    ||||| |||||||| ||||||    
T  5730189 agctactatttgacaagattttgtactaaatagcatatcatggaacaagagcgatttattcaaa 5730252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 326
Target Start/End: Complemental strand, 19391023 - 19390976
Alignment:
Q  279 tatagcgcctctatagctgctatttgacaacattttgtactaaatagc 326  Q
    ||||||||| ||||| |||||||||||||| | |||||||||||||||    
T  19391023 tatagcgccactataactgctatttgacaatactttgtactaaatagc 19390976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 237 - 308
Target Start/End: Original strand, 30532117 - 30532188
Alignment:
Q  237 cagaagatagtagtttgtttgaattccgctatacaatagtattatagcgcctctatagctgctatttgacaa 308  Q
    ||||| ||||| ||||||| ||||||| ||| || | |||| ||||||||||||||| | ||||||||||||    
T  30532117 cagaaaatagtggtttgttcgaattcctctacactacagtactatagcgcctctataaccgctatttgacaa 30532188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 262 - 321
Target Start/End: Complemental strand, 33260497 - 33260438
Alignment:
Q  262 ccgctatacaatagtattatagcgcctctatagctgctatttgacaacattttgtactaa 321  Q
    |||||| |||||||| ||||||| || |||||| |||||||| ||||||||||| |||||    
T  33260497 ccgctacacaatagttttatagcaccactatagatgctatttcacaacattttgcactaa 33260438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 342
Target Start/End: Original strand, 33851279 - 33851330
Alignment:
Q  291 atagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaata 342  Q
    ||||| |||||||| ||||||||| |||||||||||||||  ||||||||||    
T  33851279 atagcagctatttggcaacattttatactaaatagcatatgacaaaacaata 33851330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 358
Target Start/End: Complemental strand, 3737038 - 3736992
Alignment:
Q  312 tttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt 358  Q
    |||||||| |||||||||||||| ||||||| | |||||||||||||    
T  3737038 tttgtactgaatagcatatcgcagaacaataacaatttgttcaaatt 3736992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 358
Target Start/End: Complemental strand, 26494466 - 26494408
Alignment:
Q  300 atttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt 358  Q
    ||||||||||| |||||||||||||||  || ||| ||||||||| ||| |||||||||    
T  26494466 atttgacaacagtttgtactaaatagcgaattgcagaacaatagcaattagttcaaatt 26494408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 372
Target Start/End: Complemental strand, 31322702 - 31322632
Alignment:
Q  302 ttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctatag 372  Q
    ||||||||||||||||  ||||||  |||| || || |||| | ||||||||||||| |||||||||||||    
T  31322702 ttgacaacattttgtaagaaatagtgtatcacagaataataacaatttgttcaaattccactacgctatag 31322632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 372
Target Start/End: Original strand, 31694723 - 31694797
Alignment:
Q  298 ctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctatag 372  Q
    |||||||| |||||||||||||||||||  |||| || |||||||||  |||||  ||||| |||||||| ||||    
T  31694723 ctatttgaaaacattttgtactaaatagtgtatcacagaacaatagcagtttgtctaaattccactacgccatag 31694797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 324
Target Start/End: Complemental strand, 33386254 - 33386192
Alignment:
Q  262 ccgctatacaatagtattatagcgcctctatagctgctatttgacaacattttgtactaaata 324  Q
    |||||| |||||||| |||||||||| ||||||  ||||||| ||||||||||| || |||||    
T  33386254 ccgctacacaatagttttatagcgccactatagaggctatttcacaacattttgaaccaaata 33386192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 401
Target Start/End: Complemental strand, 2496447 - 2496383
Alignment:
Q  336 aacaatagcgatttgttcaaatttcactacgctatagtggctataacgccgctatttaacaatatt 401  Q
    ||||| ||||||||||||||||| ||||| || ||||| |||  ||||||||||||| ||||||||    
T  2496447 aacaacagcgatttgttcaaattccactaagccatagt-gctgcaacgccgctatttgacaatatt 2496383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 325
Target Start/End: Original strand, 4354338 - 4354371
Alignment:
Q  292 tagctgctatttgacaacattttgtactaaatag 325  Q
    |||||||||||| |||||||||||||||||||||    
T  4354338 tagctgctattttacaacattttgtactaaatag 4354371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 324
Target Start/End: Complemental strand, 9075271 - 9075206
Alignment:
Q  259 attccgctatacaatagtattatagcgcctctatagctgctatttgacaacattttgtactaaata 324  Q
    |||||| ||||||| |||  ||||||||| ||||| |  |||||||||||||||||||||| ||||    
T  9075271 attccgttatacaacagtgctatagcgccgctataacctctatttgacaacattttgtacttaata 9075206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 360
Target Start/End: Original strand, 29404955 - 29405008
Alignment:
Q  307 aacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttc 360  Q
    |||| ||||||||||||| |||||||  |||||||||| |||| ||||||||||    
T  29404955 aacactttgtactaaataacatatcgtgaaacaatagcaattttttcaaatttc 29405008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 326
Target Start/End: Original strand, 32392369 - 32392406
Alignment:
Q  289 ctatagctgctatttgacaacattttgtactaaatagc 326  Q
    |||||||||||||||||||| | |||||||||||||||    
T  32392369 ctatagctgctatttgacaatactttgtactaaatagc 32392406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 358
Target Start/End: Complemental strand, 24769369 - 24769309
Alignment:
Q  298 ctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt 358  Q
    ||||||||||| | ||||||||||||||  ||| ||| |||||||  ||||||||||||||    
T  24769369 ctatttgacaatactttgtactaaatagtgtattgcagaacaataatgatttgttcaaatt 24769309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 289 - 372
Target Start/End: Original strand, 15606321 - 15606404
Alignment:
Q  289 ctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctatag 372  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||| |||||||| |||||||| ||||||||| | |||||||    
T  15606321 ctatagctgttatttgacaacattttgtactaaatagcatatagcagaacaatagtgatttgtttaaatttcacaatgctatag 15606404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 274 - 358
Target Start/End: Complemental strand, 7347777 - 7347693
Alignment:
Q  274 agtattatagcgcctctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt 358  Q
    |||| ||||||||||||||||| ||||||| |||| ||||||||||||||||  ||| ||||||||||||| |||||||||||||    
T  7347777 agtactatagcgcctctatagccgctatttcacaatattttgtactaaatagtgtattgcaaaacaatagcaatttgttcaaatt 7347693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 279 - 358
Target Start/End: Original strand, 6025952 - 6026031
Alignment:
Q  279 tatagcgcctctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt 358  Q
    ||||||||  |||||||  ||||||||||||||||||||||||||||||||||||  ||||||| | |||||||||||||    
T  6025952 tatagcgctgctatagccactatttgacaacattttgtactaaatagcatatcgcggaacaataactatttgttcaaatt 6026031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 290 - 360
Target Start/End: Complemental strand, 17473206 - 17473136
Alignment:
Q  290 tatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttc 360  Q
    |||||| |||||||||||| ||||||||||||||||||||| |||||||||||||  |||||| |||||||    
T  17473206 tatagcggctatttgacaatattttgtactaaatagcatattgcaaaacaatagcattttgtttaaatttc 17473136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 297 - 374
Target Start/End: Original strand, 52517064 - 52517141
Alignment:
Q  297 gctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctatagtg 374  Q
    |||||||||||| ||||||||||||||| |||||| ||||| |||||| ||| ||||||||| |||||| ||||||||    
T  52517064 gctatttgacaatattttgtactaaataacatatcacaaaataatagcaattagttcaaattccactactctatagtg 52517141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 297 - 364
Target Start/End: Complemental strand, 30882515 - 30882449
Alignment:
Q  297 gctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcacta 364  Q
    ||||||||||  ||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||    
T  30882515 gctatttgacgtcattttgtactaa-tagcatatcgcaaaacaatagtgatttgttcaaattccacta 30882449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 298 - 372
Target Start/End: Complemental strand, 44417857 - 44417783
Alignment:
Q  298 ctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctatag 372  Q
    ||||||||||||| |||| |||||||| |||||| |||||||||| || ||||||||||||  ||||||||||||    
T  44417857 ctatttgacaacactttgcactaaataacatatcccaaaacaataacggtttgttcaaattctactacgctatag 44417783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 233 - 358
Target Start/End: Original strand, 43391470 - 43391595
Alignment:
Q  233 atcgcagaagatagtagtttgtttgaattccgctatacaatagtattatagcgcctctatagctgctatttgacaacattttgtactaaatagcatatcg 332  Q
    |||||| || |||| ||||||||||| ||| ||||| ||| |||  ||||||    ||||||| || ||||||||||||||||||||||||||   ||||    
T  43391470 atcgcaaaaaatagcagtttgtttgagttctgctatgcaacagtgctatagcaatgctatagccgccatttgacaacattttgtactaaatagtgcatcg 43391569  T
Q  333 caaaacaatagcgatttgttcaaatt 358  Q
       |||||||||||||||||||||||    
T  43391570 gggaacaatagcgatttgttcaaatt 43391595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 289 - 358
Target Start/End: Original strand, 47847982 - 47848050
Alignment:
Q  289 ctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt 358  Q
    ||||||| |||||||||||||||||||||| |||| ||||||||   |||||||||||||||||||||||    
T  47847982 ctatagccgctatttgacaacattttgtac-aaatggcatatcgtggaacaatagcgatttgttcaaatt 47848050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 289 - 355
Target Start/End: Complemental strand, 3240548 - 3240482
Alignment:
Q  289 ctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaa 355  Q
    |||||||  ||||||||||||||| | || |||||||| |||||||||||||||| |||||||||||    
T  3240548 ctatagcctctatttgacaacattgtttaataaatagcgtatcgcaaaacaatagtgatttgttcaa 3240482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 235 - 397
Target Start/End: Complemental strand, 15794165 - 15794004
Alignment:
Q  235 cgcagaagatagtagtttgtttgaattccgctatacaatagtattatagcgcctctatagctgctatttgacaacattttgtactaaatagcatatcgca 334  Q
    ||||||| |||||  |||||||||||||| ||| ||||||||  |||||||||  ||||||  | | | |||| |||||||||||||||||| |||| ||    
T  15794165 cgcagaaaatagtgatttgtttgaattccactacacaatagtgctatagcgccgttatagcaccgact-gacagcattttgtactaaatagcgtatctca 15794067  T
Q  335 aaacaatagcgatttgttcaaatttcactacgctatagtg--gctataacgccgctatttaacaa 397  Q
     ||||| |  ||| |||||||||| |||| |||||||| |  ||||||  |||||||||||||||    
T  15794066 gaacaaaaatgatctgttcaaattccactgcgctatagcgctgctata--gccgctatttaacaa 15794004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 290 - 358
Target Start/End: Complemental strand, 15955961 - 15955893
Alignment:
Q  290 tatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt 358  Q
    ||||| ||||||||||||||||||||| ||||||||  |||| || ||||| | |||||||||||||||    
T  15955961 tatagatgctatttgacaacattttgtcctaaatagtgtatcacataacaagaacgatttgttcaaatt 15955893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 300 - 356
Target Start/End: Complemental strand, 32868328 - 32868272
Alignment:
Q  300 atttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaa 356  Q
    ||||||||||| |||| ||||||||| |||| ||| |||||||||||||||||||||    
T  32868328 atttgacaacaatttgcactaaatagtatattgcagaacaatagcgatttgttcaaa 32868272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 298 - 353
Target Start/End: Complemental strand, 33651715 - 33651660
Alignment:
Q  298 ctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttc 353  Q
    ||||||||||||||||| ||||||||||||||| | | ||||||| ||||||||||    
T  33651715 ctatttgacaacattttatactaaatagcatattgtagaacaataacgatttgttc 33651660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 289 - 351
Target Start/End: Original strand, 15592675 - 15592737
Alignment:
Q  289 ctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgt 351  Q
    ||||||| ||||||||||||||||||  || ||||||||||| ||||||||| || |||||||    
T  15592675 ctatagccgctatttgacaacattttacaccaaatagcatattgcaaaacaagagtgatttgt 15592737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 329
Target Start/End: Original strand, 26161587 - 26161637
Alignment:
Q  279 tatagcgcctctatagctgctatttgacaacattttgtactaaatagcata 329  Q
    ||||||||  |||||||||||||||||||| | ||||||||||||||||||    
T  26161587 tatagcgcggctatagctgctatttgacaatactttgtactaaatagcata 26161637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 358
Target Start/End: Complemental strand, 3950742 - 3950673
Alignment:
Q  289 ctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt 358  Q
    ||||||| ||||||| |||  |||| |||||||||||| ||||||  |||||||| ||||||||||||||    
T  3950742 ctatagcagctatttcacattatttggtactaaatagcgtatcgcggaacaatagtgatttgttcaaatt 3950673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 279 - 360
Target Start/End: Complemental strand, 7991597 - 7991516
Alignment:
Q  279 tatagcgcctctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttc 360  Q
    ||||||||| || |||||||||||| |||| ||| |||||||||| || |||| |  |||||||| | ||||||||||||||    
T  7991597 tatagcgccactctagctgctatttcacaatattatgtactaaatggcgtatcacggaacaatagtggtttgttcaaatttc 7991516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 358
Target Start/End: Original strand, 15923758 - 15923827
Alignment:
Q  289 ctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt 358  Q
    ||||||||||||| | |||||| || |||| ||||||  |||| |||||||||||||||| |||||||||    
T  15923758 ctatagctgctatctaacaacacttcgtacaaaatagtgtatcacaaaacaatagcgattagttcaaatt 15923827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 270 - 375
Target Start/End: Original strand, 26360296 - 26360401
Alignment:
Q  270 caatagtattatagcgcctctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgcta 369  Q
    |||||||| |||| |||| ||||||  ||||||||| | ||||||||||||||||| ||| ||   |||||| ||| ||||| |||||| ||| ||| ||    
T  26360296 caatagtactatatcgccactatagtcgctatttgatagcattttgtactaaatagtataccggggaacaattgcggtttgtccaaattccaccacgtta 26360395  T
Q  370 tagtgg 375  Q
    ||||||    
T  26360396 tagtgg 26360401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 297 - 358
Target Start/End: Complemental strand, 32721482 - 32721421
Alignment:
Q  297 gctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt 358  Q
    |||||||||||||||||||||||||||||    ||||||||||||| | |||||||| ||||    
T  32721482 gctatttgacaacattttgtactaaatagtgcttcgcaaaacaataacaatttgttcgaatt 32721421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 358
Target Start/End: Original strand, 11766188 - 11766237
Alignment:
Q  307 aacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt 358  Q
    |||| ||||||||||||||||||||  ||||||||||| |||||||||||||    
T  11766188 aacactttgtactaaatagcatatc--aaaacaatagctatttgttcaaatt 11766237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 358
Target Start/End: Complemental strand, 12764101 - 12764017
Alignment:
Q  274 agtattatagcgcctctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt 358  Q
    |||| ||||||||| ||||||| ||||||||  |||| || ||| |||||||||||| ||| ||||||||  ||||||| |||||    
T  12764101 agtactatagcgccactatagccgctatttggaaacacttcgtattaaatagcatattgcagaacaatagtaatttgttaaaatt 12764017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 374
Target Start/End: Complemental strand, 28067557 - 28067473
Alignment:
Q  290 tatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctatagtg 374  Q
    ||||||||| ||| ||||| ||||| ||| ||||| ||||||||||||||| || |||||  ||||||| | ||| |||||||||    
T  28067557 tatagctgcaattcgacaatattttataccaaataacatatcgcaaaacaacagtgatttcatcaaattcccctatgctatagtg 28067473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 281 - 352
Target Start/End: Complemental strand, 400972 - 400901
Alignment:
Q  281 tagcgcctctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgtt 352  Q
    ||||||| ||||| || ||||||||||| | |||||||||||| | |||||||| |||||| | ||||||||    
T  400972 tagcgccactataacttctatttgacaatactttgtactaaattgtatatcgcagaacaatggtgatttgtt 400901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 289 - 364
Target Start/End: Complemental strand, 11049122 - 11049047
Alignment:
Q  289 ctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcacta 364  Q
    ||||||||||||||||| || ||||||||||| ||||  |||||   | || |||||||||||||||||| |||||    
T  11049122 ctatagctgctatttgataagattttgtactagatagtgtatcgtggagcagtagcgatttgttcaaattccacta 11049047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 297 - 344
Target Start/End: Original strand, 46331109 - 46331156
Alignment:
Q  297 gctatttgacaacattttgtactaaatagcatatcgcaaaacaatagc 344  Q
    ||||||||||| ||||||||||| |||||||||||  |||||||||||    
T  46331109 gctatttgacaccattttgtacttaatagcatatcataaaacaatagc 46331156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 358
Target Start/End: Complemental strand, 3335211 - 3335145
Alignment:
Q  292 tagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt 358  Q
    ||||||||||||||||||| ||| ||||||| ||  | ||||  |||||||| ||||||||||||||    
T  3335211 tagctgctatttgacaacactttatactaaacagggtgtcgcggaacaatagtgatttgttcaaatt 3335145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 355
Target Start/End: Complemental strand, 4541638 - 4541583
Alignment:
Q  298 ctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaa 355  Q
    ||||||||||||| |  |||| ||||||||||| ||||||||||| ||||||||||||    
T  4541638 ctatttgacaacact--gtaccaaatagcatattgcaaaacaataacgatttgttcaa 4541583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 371
Target Start/End: Complemental strand, 15190929 - 15190855
Alignment:
Q  297 gctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctata 371  Q
    ||||||||||||||||||||||| |||||  ||||| | ||||||||| |||| || ||||| | ||| ||||||    
T  15190929 gctatttgacaacattttgtactgaatagtgtatcgtagaacaatagcaatttctttaaattccgctaggctata 15190855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 355
Target Start/End: Original strand, 15364936 - 15365009
Alignment:
Q  279 tatagcgcctctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaa 355  Q
    ||||| |||| |||||| ||||||| |||||| |||||||||| ||   |||| |||||||||||| ||||||||||    
T  15364936 tatagtgcctgtatagccgctatttaacaacactttgtactaagta---tatcacaaaacaatagcaatttgttcaa 15365009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 345
Target Start/End: Complemental strand, 19392262 - 19392212
Alignment:
Q  295 ctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcg 345  Q
    |||||||||||||| |||||||||| ||||| ||||||  |||||||||||    
T  19392262 ctgctatttgacaatattttgtacttaatagtatatcgtgaaacaatagcg 19392212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 369
Target Start/End: Complemental strand, 50322108 - 50322030
Alignment:
Q  291 atagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgcta 369  Q
    |||||||| ||||||||| ||||| |||||||| |  ||||| | |||||||| | |||||||||||| ||||| ||||    
T  50322108 atagctgcaatttgacaatattttatactaaattgtgtatcgtagaacaatagtggtttgttcaaattccactatgcta 50322030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 358
Target Start/End: Original strand, 14643201 - 14643262
Alignment:
Q  297 gctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt 358  Q
    ||||||||| ||||| || ||||||||||| ||||||  |||||| || |||||||||||||    
T  14643201 gctatttgaaaacatcttctactaaatagcgtatcgctgaacaatggcaatttgttcaaatt 14643262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 358
Target Start/End: Complemental strand, 15956935 - 15956878
Alignment:
Q  301 tttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt 358  Q
    |||||||||| ||||||||||||||| ||| ||  ||||||| | |||||||||||||    
T  15956935 tttgacaacactttgtactaaatagcgtatggcggaacaataacaatttgttcaaatt 15956878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 353
Target Start/End: Original strand, 1880082 - 1880137
Alignment:
Q  297 gctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttc 353  Q
    ||||||||||||||||||||||| |||||  |||| || ||||||||| ||||||||    
T  1880082 gctatttgacaacattttgtact-aatagagtatcacataacaatagcaatttgttc 1880137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 358
Target Start/End: Complemental strand, 46937630 - 46937570
Alignment:
Q  298 ctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt 358  Q
    |||||| |||| |||||||||||||||||  |||||  |||||||||  ||||||||||||    
T  46937630 ctatttcacaatattttgtactaaatagcgcatcgcggaacaatagcactttgttcaaatt 46937570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 373
Target Start/End: Original strand, 48432631 - 48432703
Alignment:
Q  301 tttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctatagt 373  Q
    |||||||||||| ||||||||||||| |||  ||||||||||| | | ||| ||||||   ||||||||||||    
T  48432631 tttgacaacattgtgtactaaatagcgtattacaaaacaatagtggtgtgtccaaattctgctacgctatagt 48432703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 290 - 374
Target Start/End: Original strand, 7245942 - 7246026
Alignment:
Q  290 tatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctatagtg 374  Q
    |||||| |||||||||||||| ||||||||||||||| |||||||||| |||||||||||||| ||||| ||| ||| |||||||    
T  7245942 tatagccgctatttgacaacactttgtactaaatagcgtatcgcaaaagaatagcgatttgtttaaattccaccacggtatagtg 7246026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 291 - 372
Target Start/End: Original strand, 6894305 - 6894386
Alignment:
Q  291 atagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctatag 372  Q
    ||||||| ||||||||||||||||||||| |||||  ||| |  |||||||||| ||||||||||||| |||||||||||||    
T  6894305 atagctgttatttgacaacattttgtacttaatagtgtattgttaaacaatagcaatttgttcaaattccactacgctatag 6894386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 290 - 360
Target Start/End: Original strand, 1110401 - 1110471
Alignment:
Q  290 tatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttc 360  Q
    ||||| ||||||||||||||| || | ||||||||||||||| | |||||||||| |||||||||||||||    
T  1110401 tatagttgctatttgacaacacttagaactaaatagcatatcccgaaacaatagcaatttgttcaaatttc 1110471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 289 - 358
Target Start/End: Original strand, 38774312 - 38774381
Alignment:
Q  289 ctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt 358  Q
    ||||||| |||||||||||||||  |||||||||||||||| |||  |||||||| ||||||||||||||    
T  38774312 ctatagccgctatttgacaacatgatgtactaaatagcataacgctgaacaatagtgatttgttcaaatt 38774381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 279 - 354
Target Start/End: Complemental strand, 24942574 - 24942499
Alignment:
Q  279 tatagcgcctctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttca 354  Q
    ||||||||| ||| ||||||||||||||||||||||||||||| |||| ||||    |||||||||||| ||||||    
T  24942574 tatagcgccgctacagctgctatttgacaacattttgtactaattagcgtatcatggaacaatagcgatctgttca 24942499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 297 - 371
Target Start/End: Original strand, 2219525 - 2219599
Alignment:
Q  297 gctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctata 371  Q
    |||||||||||| ||||||||||||||||||||||  | ||||||| |||| ||||||||||  ||||| |||||    
T  2219525 gctatttgacaatattttgtactaaatagcatatcagagaacaataacgatatgttcaaattctactacactata 2219599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 236 - 358
Target Start/End: Original strand, 30900051 - 30900173
Alignment:
Q  236 gcagaagatagtagtttgtttgaattccgctatacaatagtattatagcgcctctatagctgctatttgacaacattttgtactaaatagcatatcgcaa 335  Q
    |||||| ||||| ||||| |  |||||||||||  || |||| |||||| || | |||||  |||||| |||| ||||||||||||||||  ||||||      
T  30900051 gcagaaaatagtggtttgctcaaattccgctatgtaacagtactatagcaccgcgatagccactatttcacaatattttgtactaaatagtgtatcgctg 30900150  T
Q  336 aacaatagcgatttgttcaaatt 358  Q
    ||||||||||||| |||||||||    
T  30900151 aacaatagcgattcgttcaaatt 30900173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 304 - 358
Target Start/End: Complemental strand, 39417816 - 39417762
Alignment:
Q  304 gacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt 358  Q
    ||||||||||||||||| ||||||||||||  |||||||| ||||||||||||||    
T  39417816 gacaacattttgtactatatagcatatcgcggaacaatagtgatttgttcaaatt 39417762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 289 - 358
Target Start/End: Complemental strand, 23747392 - 23747323
Alignment:
Q  289 ctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt 358  Q
    ||||||||  |||| ||||||| |||||||||| ||||||||| || ||||||||| |||||||||||||    
T  23747392 ctatagctattattcgacaacagtttgtactaactagcatatcacagaacaatagctatttgttcaaatt 23747323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 258 - 358
Target Start/End: Complemental strand, 38921362 - 38921262
Alignment:
Q  258 aattccgctatacaatagtattatagcgcctctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaat 357  Q
    |||||||||| |||| | |  ||||||||| || ||||| ||| || |||| |||||| ||||||||| |||||||| ||||| || |||||||||||||    
T  38921362 aattccgctacacaacaatgctatagcgccactgtagctactacttcacaatattttgcactaaatagtatatcgcagaacaacagtgatttgttcaaat 38921263  T
Q  358 t 358  Q
    |    
T  38921262 t 38921262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 302 - 360
Target Start/End: Original strand, 1109354 - 1109412
Alignment:
Q  302 ttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttc 360  Q
    ||||||||||||||||||||||||  ||||||  |||||| | ||||||||||||||||    
T  1109354 ttgacaacattttgtactaaatagtgtatcgcggaacaatggggatttgttcaaatttc 1109412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 358
Target Start/End: Complemental strand, 13380968 - 13380906
Alignment:
Q  296 tgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt 358  Q
    |||| ||||||||||||||||||||||||||  || ||| |||| |||| |||||||||||||    
T  13380968 tgctgtttgacaacattttgtactaaatagcggatagcagaacagtagcaatttgttcaaatt 13380906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 290 - 344
Target Start/End: Original strand, 21451517 - 21451571
Alignment:
Q  290 tatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagc 344  Q
    |||||| |||||||||||| |||||||||||||| || ||||||| |||||||||    
T  21451517 tatagccgctatttgacaagattttgtactaaattgcgtatcgcagaacaatagc 21451571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 358
Target Start/End: Original strand, 23218571 - 23218681
Alignment:
Q  248 agtttgtttgaattccgctatacaatagtattatagcgcctctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgat 347  Q
    ||||||||| ||||||| ||| ||  |||  |||||||||  ||||  |||||||||||||||||||||| |||||||| ||||  | ||||||  ||||    
T  23218571 agtttgtttaaattccgttatgcagcagtgctatagcgccattatatttgctatttgacaacattttgtattaaatagcgtatcatagaacaatgacgat 23218670  T
Q  348 ttgttcaaatt 358  Q
    |||| ||||||    
T  23218671 ttgtccaaatt 23218681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 319 - 372
Target Start/End: Original strand, 400623 - 400676
Alignment:
Q  319 taaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctatag 372  Q
    |||||||||||| ||| | ||||||||||||||||||||| ||||||| |||||    
T  400623 taaatagcatattgcatagcaatagcgatttgttcaaattccactacgatatag 400676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 326
Target Start/End: Complemental strand, 5260459 - 5260422
Alignment:
Q  289 ctatagctgctatttgacaacattttgtactaaatagc 326  Q
    |||||||||||||||||||| |||||||||||||||||    
T  5260459 ctatagctgctatttgacaatattttgtactaaatagc 5260422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 301 - 358
Target Start/End: Original strand, 21450959 - 21451016
Alignment:
Q  301 tttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt 358  Q
    |||||||| | |||||||||||||||||||  || |||||||| ||||||||||||||    
T  21450959 tttgacaatagtttgtactaaatagcatattccagaacaatagtgatttgttcaaatt 21451016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 343
Target Start/End: Complemental strand, 8095955 - 8095907
Alignment:
Q  295 ctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatag 343  Q
    |||||||| ||||||||||||||||||||||  |||||||| |||||||    
T  8095955 ctgctattcgacaacattttgtactaaatagtgtatcgcaacacaatag 8095907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 358
Target Start/End: Original strand, 23117360 - 23117420
Alignment:
Q  298 ctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt 358  Q
    |||||| |||||||||||| ||||||||||||||    || ||||||||||||||||||||    
T  23117360 ctatttcacaacattttgtgctaaatagcatatcatggaaaaatagcgatttgttcaaatt 23117420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 343
Target Start/End: Complemental strand, 44124610 - 44124546
Alignment:
Q  279 tatagcgcctctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatag 343  Q
    ||||||||| ||||| | |||||||||||| ||| ||||||||||||  ||||||| ||||||||    
T  44124610 tatagcgccgctatatcagctatttgacaatattctgtactaaatagtgtatcgcagaacaatag 44124546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 358
Target Start/End: Original strand, 1662624 - 1662703
Alignment:
Q  279 tatagcgcctctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt 358  Q
    ||||| ||||||||||   | |||||||||||||||  ||||||||||  |||||| |||||||  ||||||||||||||    
T  1662624 tatagtgcctctatagtcaccatttgacaacatttttcactaaatagcgcatcgcagaacaataatgatttgttcaaatt 1662703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 326
Target Start/End: Complemental strand, 10455141 - 10455094
Alignment:
Q  279 tatagcgcctctatagctgctatttgacaacattttgtactaaatagc 326  Q
    ||||||||| ||||||| || ||||||||| |||||||||||||||||    
T  10455141 tatagcgccactatagccgcaatttgacaaaattttgtactaaatagc 10455094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 237 - 324
Target Start/End: Original strand, 24673364 - 24673451
Alignment:
Q  237 cagaagatagtagtttgtttgaattccgctatacaatagtattatagcgcctctatagctgctatttgacaacattttgtactaaata 324  Q
    ||||| ||||| |||||||  ||||| ||||| ||| |||  ||| | ||| ||||||| ||||||||||||||||||||||| ||||    
T  24673364 cagaaaatagtggtttgttcaaattcagctatgcaacagtgatatggtgccgctatagcggctatttgacaacattttgtactgaata 24673451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 294 - 357
Target Start/End: Original strand, 33007893 - 33007955
Alignment:
Q  294 gctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaat 357  Q
    ||||||||||||||||||||||| || |||||| ||||||  || ||||||| |||||||||||    
T  33007893 gctgctatttgacaacattttgtgct-aatagcttatcgcggaataatagcggtttgttcaaat 33007955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 297 - 356
Target Start/End: Complemental strand, 37233781 - 37233722
Alignment:
Q  297 gctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaa 356  Q
    ||||||||||||||||||||||||||||| |||||   ||||||| | || |||||||||    
T  37233781 gctatttgacaacattttgtactaaataggatatcctgaaacaattgtgaattgttcaaa 37233722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 289 - 372
Target Start/End: Original strand, 38622871 - 38622954
Alignment:
Q  289 ctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctatag 372  Q
    ||||||| |||||||||||||||||||| ||||||||  ||||    ||||||| |||||| ||||||||   |||||||||||    
T  38622871 ctatagccgctatttgacaacattttgtgctaaatagtgtatcatggaacaatatcgatttattcaaattctgctacgctatag 38622954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 372
Target Start/End: Original strand, 7982345 - 7982415
Alignment:
Q  302 ttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctatag 372  Q
    ||||||||| |||| | | |||||  |||| |||||||||||| ||||||||||||| ||||| |||||||    
T  7982345 ttgacaacaatttgcagtgaatagtgtatcacaaaacaatagcaatttgttcaaattccactatgctatag 7982415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 372
Target Start/End: Original strand, 21343694 - 21343752
Alignment:
Q  314 tgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctatag 372  Q
    ||||||||||||  ||||||||||||| || |||||||||| ||| | |||||||||||    
T  21343694 tgtactaaatagtgtatcgcaaaacaacagtgatttgttcatattcctctacgctatag 21343752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 371
Target Start/End: Complemental strand, 25268875 - 25268805
Alignment:
Q  301 tttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctata 371  Q
    |||||||| ||||| ||||||||||  ||| ||| ||||||| |||||||||||||||   ||||||||||    
T  25268875 tttgacaatattttatactaaatagtgtatagcagaacaataacgatttgttcaaattctgctacgctata 25268805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 340
Target Start/End: Original strand, 30885321 - 30885363
Alignment:
Q  298 ctatttgacaacattttgtactaaatagcatatcgcaaaacaa 340  Q
    |||||||||||  |||||||||||||||||||||||| |||||    
T  30885321 ctatttgacaatgttttgtactaaatagcatatcgcagaacaa 30885363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 360
Target Start/End: Complemental strand, 33581808 - 33581726
Alignment:
Q  278 ttatagcgcctctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttc 360  Q
    ||||||| || |||| || ||||||||||||||| |||||  ||||||| |||| |  |||||| | ||||||||||||||||    
T  33581808 ttatagcaccactatggccgctatttgacaacatattgtatcaaatagcgtatcccgtaacaatggtgatttgttcaaatttc 33581726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 324
Target Start/End: Original strand, 40869547 - 40869581
Alignment:
Q  290 tatagctgctatttgacaacattttgtactaaata 324  Q
    |||||| ||||||||||||||||||||||||||||    
T  40869547 tatagccgctatttgacaacattttgtactaaata 40869581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 365
Target Start/End: Original strand, 30408257 - 30408321
Alignment:
Q  300 atttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactac 365  Q
    |||||| ||||||||||||||| ||| ||||| | |||||||||| | ||||||||||||| ||||    
T  30408257 atttgaaaacattttgtactaattagaatatcac-aaacaatagccacttgttcaaatttcgctac 30408321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 372
Target Start/End: Complemental strand, 31838929 - 31838837
Alignment:
Q  279 tatagcgcctctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctatag 372  Q
    |||||| || ||| ||||||||||  |||||| ||||||||||||| ||||| ||| ||||||||  ||||||| ||| | ||||| |||||||    
T  31838929 tatagcaccactagagctgctattgaacaacaatttgtactaaata-catattgcagaacaatagaaatttgttaaaactccactatgctatag 31838837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 358
Target Start/End: Complemental strand, 32231823 - 32231762
Alignment:
Q  297 gctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt 358  Q
    ||||||| |||| ||||||| ||||||| |||||| || |||| ||| ||||||||||||||    
T  32231823 gctatttcacaatattttgtgctaaataacatatcacagaacactagagatttgttcaaatt 32231762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 331
Target Start/End: Complemental strand, 32889016 - 32888963
Alignment:
Q  278 ttatagcgcctctatagctgctatttgacaacattttgtactaaatagcatatc 331  Q
    |||||||||| | |||||  ||||||||||| | ||||||||||||||||||||    
T  32889016 ttatagcgccgcaatagccactatttgacaatactttgtactaaatagcatatc 32888963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 322
Target Start/End: Original strand, 34925312 - 34925345
Alignment:
Q  289 ctatagctgctatttgacaacattttgtactaaa 322  Q
    ||||||| ||||||||||||||||||||||||||    
T  34925312 ctatagccgctatttgacaacattttgtactaaa 34925345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 371
Target Start/End: Original strand, 25314032 - 25314104
Alignment:
Q  299 tatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctata 371  Q
    ||||| |||||| ||||||| ||||||  |||| || ||||||| ||||||||||||||| | ||| ||||||    
T  25314032 tatttaacaacactttgtaccaaatagtgtatcacagaacaataacgatttgttcaaattcctctatgctata 25314104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 40)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 297 - 372
Target Start/End: Complemental strand, 11257789 - 11257714
Alignment:
Q  297 gctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctatag 372  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||| | |||| ||||||    
T  11257789 gctatttgacaacattttgtactaaatagcatatcgtataacaatagcgatttgttcatattccgctacactatag 11257714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 289 - 366
Target Start/End: Original strand, 21047059 - 21047136
Alignment:
Q  289 ctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacg 366  Q
    ||||||| | |||||||||||||||| |||||||||||||||| |  |||||||| |||||  |||||||||||||||    
T  21047059 ctatagccgttatttgacaacattttttactaaatagcatatcacggaacaatagtgattttatcaaatttcactacg 21047136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 309 - 358
Target Start/End: Original strand, 39647139 - 39647188
Alignment:
Q  309 cattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt 358  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  39647139 cattttgtactaaatagcatatcgcagaacaataacgatttgttcaaatt 39647188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 258 - 358
Target Start/End: Complemental strand, 7430218 - 7430118
Alignment:
Q  258 aattccgctatacaatagtattatagcgcctctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaat 357  Q
    |||||||||| ||| |||| |||||||||  | ||||| ||||||||||||||| |||||||||||||| ||| |   |||||||||| ||||| |||||    
T  7430218 aattccgctacacagtagtgttatagcgctacaatagccgctatttgacaacatcttgtactaaatagcgtattgtggaacaatagcggtttgtccaaat 7430119  T
Q  358 t 358  Q
    |    
T  7430118 t 7430118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 294 - 358
Target Start/End: Original strand, 27731590 - 27731654
Alignment:
Q  294 gctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt 358  Q
    ||||||||||||||| | |||||||||||||||||||||  ||||||||||| |||||| |||||    
T  27731590 gctgctatttgacaaaactttgtactaaatagcatatcggtaaacaatagcggtttgtttaaatt 27731654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 289 - 372
Target Start/End: Original strand, 39159727 - 39159810
Alignment:
Q  289 ctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctatag 372  Q
    |||||||||||||||| ||||  |||||||||||| ||||||| || |||||||| | |||||| ||||| | |||||||||||    
T  39159727 ctatagctgctatttgtcaacgctttgtactaaattgcatatcacagaacaatagtggtttgttaaaattccgctacgctatag 39159810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 289 - 370
Target Start/End: Original strand, 16973824 - 16973905
Alignment:
Q  289 ctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctat 370  Q
    |||||||||||||||||||| ||||||||||||| | | ||||||  |||||||| ||||||||  |||| | |||||||||    
T  16973824 ctatagctgctatttgacaaaattttgtactaaacaacgtatcgcggaacaatagtgatttgtttgaattcctctacgctat 16973905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 371
Target Start/End: Complemental strand, 34156783 - 34156643
Alignment:
Q  231 caatcgcagaagatagtagtttgtttgaattccgctatacaatagtattatagcgcctctatagctgctatttgacaacattttgtactaaatagcatat 330  Q
    ||||||||||||||||  |||||||  ||||| ||||| ||| |||  |||||| |   ||||| |||||||| ||||||||||| |||||||||| |||    
T  34156783 caatcgcagaagatagctgtttgttcaaattctgctatgcaacagtgctatagcacaaatatagttgctatttaacaacattttgcactaaatagcgtat 34156684  T
Q  331 cgcaaaacaatagcgatttgttcaaatttcactacgctata 371  Q
    | |  | ||| ||||||| |||||||||   ||||||||||    
T  34156683 cacggagcaaaagcgattagttcaaattctgctacgctata 34156643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 294 - 358
Target Start/End: Complemental strand, 41894481 - 41894417
Alignment:
Q  294 gctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt 358  Q
    ||||||||||||||||| |||||| |||||||| ||| ||| ||||||| | |||||||||||||    
T  41894481 gctgctatttgacaacactttgtagtaaatagcgtattgcagaacaataacaatttgttcaaatt 41894417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 290 - 392
Target Start/End: Original strand, 40677960 - 40678061
Alignment:
Q  290 tatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctatagtggctataacgccgcta 389  Q
    |||||| ||||||||||||| |||||||||||| |||| |||||| ||||||  |  |||||||||||| | ||| | |||| | |||||| ||||||||    
T  40677960 tatagccgctatttgacaactttttgtactaaacagcacatcgcagaacaattccagtttgttcaaattccgctaagttataat-gctatagcgccgcta 40678058  T
Q  390 ttt 392  Q
    |||    
T  40678059 ttt 40678061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 297 - 359
Target Start/End: Original strand, 41015003 - 41015065
Alignment:
Q  297 gctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaattt 359  Q
    ||||| |||||||| |||||||||||||||||||| |  |||||||||  |||||||||||||    
T  41015003 gctatatgacaacactttgtactaaatagcatatcacggaacaatagcagtttgttcaaattt 41015065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 358
Target Start/End: Complemental strand, 6202658 - 6202589
Alignment:
Q  289 ctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt 358  Q
    |||| |||||||||| |||   ||||||||||||||||||||| || | ||||||||||||||| |||||    
T  6202658 ctatggctgctatttcacattgttttgtactaaatagcatatcacatagcaatagcgatttgttaaaatt 6202589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 249 - 397
Target Start/End: Complemental strand, 6586627 - 6586482
Alignment:
Q  249 gtttgtttgaattccgctatacaatagtattatagcgcctctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatt 348  Q
    |||||||  |||||| |||| |||||||  ||||||| | ||||| | ||| |||||||| |||||| |||||||| ||||| |    ||||||||||||    
T  6586627 gtttgttcaaattcctctatgcaatagttctatagcggcactataaccgctgtttgacaatattttgcactaaataccatattgtgggacaatagcgatt 6586528  T
Q  349 tgttcaaatttcactacgctatagtggctataacgccgctatttaacaa 397  Q
    |||| ||  | ||||| |||||||| ||||||  |||||||||||||||    
T  6586527 tgttgaatatccactatgctatagt-gctata--gccgctatttaacaa 6586482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 297 - 358
Target Start/End: Complemental strand, 33342789 - 33342728
Alignment:
Q  297 gctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt 358  Q
    |||||||||||| | |||||||| |||||  ||||||| |||||||||||||| ||||||||    
T  33342789 gctatttgacaatactttgtacttaatagtgtatcgcataacaatagcgatttattcaaatt 33342728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 291 - 372
Target Start/End: Complemental strand, 41991254 - 41991173
Alignment:
Q  291 atagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctatag 372  Q
    ||||||||||||  |||||| |||||||||||| || ||| ||| || |||| ||||||||| ||||| ||||| |||||||    
T  41991254 atagctgctattaaacaacactttgtactaaattgcgtatagcagaataatatcgatttgtttaaattccactatgctatag 41991173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 301 - 374
Target Start/End: Original strand, 43283418 - 43283491
Alignment:
Q  301 tttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctatagtg 374  Q
    |||||||||||||||| | ||||||| ||| ||  ||||| ||||||||||||||||| | ||| |||||||||    
T  43283418 tttgacaacattttgtcccaaatagcgtattgcggaacaacagcgatttgttcaaattacgctatgctatagtg 43283491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 344
Target Start/End: Complemental strand, 9446400 - 9446286
Alignment:
Q  233 atcgcagaagatagtagtttgtttgaattccgctatacaatagtattatagcgcctc---tatagctgctatttgacaacattttgtactaaatagcata 329  Q
    ||||||||| |||| |||||| |  |||||||||| |||| |||  |||||| || |   |||||| ||||||| | || ||||||||||||||||||||    
T  9446400 atcgcagaaaatagcagtttgctcaaattccgctacacaacagtgctatagcaccaccactatagccgctatttcataatattttgtactaaatagcata 9446301  T
Q  330 tcgcaaaacaatagc 344  Q
    | ||| |||||||||    
T  9446300 ttgcataacaatagc 9446286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 373
Target Start/End: Complemental strand, 31029638 - 31029562
Alignment:
Q  297 gctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctatagt 373  Q
    |||||||||||||| ||||||| || ||  |||||||| ||||| || |||||| ||||||||| ||| ||||||||    
T  31029638 gctatttgacaacactttgtacaaagtaatatatcgcagaacaacagtgatttgatcaaatttctctaagctatagt 31029562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 366
Target Start/End: Complemental strand, 40991017 - 40990949
Alignment:
Q  298 ctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacg 366  Q
    ||||||||||||||||||||||||||||| | || || || ||||||| |||||  ||||| |||||||    
T  40991017 ctatttgacaacattttgtactaaatagcgtgtcacagaagaatagcggtttgtctaaattccactacg 40990949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 335 - 397
Target Start/End: Complemental strand, 8977485 - 8977426
Alignment:
Q  335 aaacaatagcgatttgttcaaatttcactacgctatagtggctataacgccgctatttaacaa 397  Q
    ||||| ||| |||||||||||||||| |||||||||||| ||||||  |||||||||||||||    
T  8977485 aaacactagtgatttgttcaaatttcgctacgctatagt-gctata--gccgctatttaacaa 8977426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 301 - 372
Target Start/End: Complemental strand, 16033090 - 16033019
Alignment:
Q  301 tttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctatag 372  Q
    ||||||||||||||||||||| |||| ||| ||  ||||| || |||||||||||||| |  ||||||||||    
T  16033090 tttgacaacattttgtactaagtagcgtattgcgtaacaaaagagatttgttcaaattccgatacgctatag 16033019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 289 - 372
Target Start/End: Complemental strand, 29466250 - 29466168
Alignment:
Q  289 ctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctatag 372  Q
    ||||| ||| |||||||||  |||||||||||||||||||||| |||||| || | ||| |||||||||| |||| | ||||||    
T  29466250 ctataactgttatttgacat-attttgtactaaatagcatatcacaaaacgatggtgatatgttcaaattccactccactatag 29466168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 333
Target Start/End: Complemental strand, 17855260 - 17855226
Alignment:
Q  299 tatttgacaacattttgtactaaatagcatatcgc 333  Q
    |||||||||||||||||||||||| ||||||||||    
T  17855260 tatttgacaacattttgtactaaaaagcatatcgc 17855226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 358
Target Start/End: Original strand, 18551479 - 18551549
Alignment:
Q  288 tctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt 358  Q
    |||||||  ||||| |||||||| |||||||||||| ||||||| | ||||||||||  |||||| |||||    
T  18551479 tctatagacgctatatgacaacactttgtactaaattgcatatctcgaaacaatagctgtttgttaaaatt 18551549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 374
Target Start/End: Original strand, 18839185 - 18839223
Alignment:
Q  336 aacaatagcgatttgttcaaatttcactacgctatagtg 374  Q
    ||||||||| |||||||||||| ||||||||||||||||    
T  18839185 aacaatagctatttgttcaaatatcactacgctatagtg 18839223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 360
Target Start/End: Original strand, 19115099 - 19115160
Alignment:
Q  298 ctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttc 360  Q
    |||||||||||| |||||||||||||| ||||| || |||||| ||| || ||||||||||||    
T  19115099 ctatttgacaacgttttgtactaaatatcatattgc-aaacaacagcaatctgttcaaatttc 19115160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 358
Target Start/End: Complemental strand, 20981328 - 20981270
Alignment:
Q  300 atttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt 358  Q
    ||||||||| ||||| ||||||||||| ||| ||| |||||||| |||| |||||||||    
T  20981328 atttgacaatattttatactaaatagcgtattgcagaacaatagtgattagttcaaatt 20981270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 360
Target Start/End: Original strand, 40213882 - 40213951
Alignment:
Q  290 tatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttc 360  Q
    ||||||| | ||||||||||||||||||||| ||||| ||| ||  |||||||| ||||||||||| ||||    
T  40213882 tatagctaccatttgacaacattttgtactacatagcgtattgc-gaacaatagtgatttgttcaattttc 40213951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 359
Target Start/End: Original strand, 41376333 - 41376402
Alignment:
Q  289 ctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaattt 359  Q
    ||||||||||||||| ||||  | ||||||||| ||||||||||||||||||| |  || |||||||||||    
T  41376333 ctatagctgctatttcacaatgtgttgtactaa-tagcatatcgcaaaacaatggacatatgttcaaattt 41376402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 358
Target Start/End: Original strand, 1792110 - 1792139
Alignment:
Q  329 atcgcaaaacaatagcgatttgttcaaatt 358  Q
    ||||||||||||||||||||||||||||||    
T  1792110 atcgcaaaacaatagcgatttgttcaaatt 1792139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 364
Target Start/End: Original strand, 7477556 - 7477621
Alignment:
Q  299 tatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcacta 364  Q
    |||||||||||| |||||||||||||| | |||||  |||||||| ||||| || ||||| |||||    
T  7477556 tatttgacaacactttgtactaaatagtaaatcgcggaacaatagtgatttattaaaattccacta 7477621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 358
Target Start/End: Original strand, 14956693 - 14956762
Alignment:
Q  289 ctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt 358  Q
    |||||| |||||||||||||||  | || |||||||| ||||| || || ||||| ||||||||||||||    
T  14956693 ctatagatgctatttgacaacacatagtgctaaatagaatatcacagaataatagtgatttgttcaaatt 14956762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 358
Target Start/End: Complemental strand, 38346923 - 38346862
Alignment:
Q  297 gctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt 358  Q
    ||||||||||||||||||||| |||||||  |||| || |||||||| || || ||||||||    
T  38346923 gctatttgacaacattttgtagtaaatagtgtatcacagaacaatagtgactttttcaaatt 38346862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 365
Target Start/End: Original strand, 39647243 - 39647296
Alignment:
Q  312 tttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactac 365  Q
    ||||| ||||| ||||||||||| ||||||| |||||| |||||||| ||||||    
T  39647243 tttgtgctaaacagcatatcgcagaacaataacgatttattcaaattccactac 39647296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 333
Target Start/End: Original strand, 631483 - 631527
Alignment:
Q  289 ctatagctgctatttgacaacattttgtactaaatagcatatcgc 333  Q
    ||||||| ||||| |||||| ||||||||||||||||| ||||||    
T  631483 ctatagccgctatatgacaatattttgtactaaatagcgtatcgc 631527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 249 - 325
Target Start/End: Complemental strand, 4788021 - 4787945
Alignment:
Q  249 gtttgtttgaattccgctatacaatagtattatagcgcctctatagctgctatttgacaacattttgtactaaatag 325  Q
    |||||||  ||||||| |||| || |||  ||||| |||| | ||||  ||||||||||||||||||||||||||||    
T  4788021 gtttgttcaaattccgatataaaacagtgctatagtgcctgtgtagccactatttgacaacattttgtactaaatag 4787945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 333
Target Start/End: Original strand, 13996378 - 13996410
Alignment:
Q  301 tttgacaacattttgtactaaatagcatatcgc 333  Q
    |||||||||||||||||||||||||| ||||||    
T  13996378 tttgacaacattttgtactaaatagcgtatcgc 13996410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 292 - 344
Target Start/End: Original strand, 34451993 - 34452045
Alignment:
Q  292 tagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagc 344  Q
    |||||| ||||| |||| | |||||||||||| ||||||||| ||||||||||    
T  34451993 tagctgatattttacaatactttgtactaaattgcatatcgctaaacaatagc 34452045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 355
Target Start/End: Complemental strand, 37056430 - 37056370
Alignment:
Q  295 ctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaa 355  Q
    ||||||||||||||||||| |||||||| ||| || | |  ||||||||| ||||||||||    
T  37056430 ctgctatttgacaacatttcgtactaaacagcgtaccacggaacaatagcaatttgttcaa 37056370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 325
Target Start/End: Original strand, 41399570 - 41399598
Alignment:
Q  297 gctatttgacaacattttgtactaaatag 325  Q
    |||||||||||||||||||||||||||||    
T  41399570 gctatttgacaacattttgtactaaatag 41399598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 37)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 251 - 336
Target Start/End: Complemental strand, 27318081 - 27317996
Alignment:
Q  251 ttgtttgaattccgctatacaatagtattatagcgcctctatagctgctatttgacaacattttgtactaaatagcatatcgcaaa 336  Q
    |||||| ||||||||||  |||||||  ||||||||| ||||||| ||||||||||| |||||| ||||||||||||||| |||||    
T  27318081 ttgtttaaattccgctaggcaatagttatatagcgccactatagccgctatttgacagcattttttactaaatagcatatagcaaa 27317996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 302 - 369
Target Start/End: Complemental strand, 33958297 - 33958230
Alignment:
Q  302 ttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgcta 369  Q
    |||||||||||||||| | |||||||||| ||| ||||||||||| ||||||||||| ||||||||||    
T  33958297 ttgacaacattttgtattcaatagcatattgcagaacaatagcgagttgttcaaattccactacgcta 33958230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 289 - 359
Target Start/End: Complemental strand, 26174994 - 26174925
Alignment:
Q  289 ctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaattt 359  Q
    ||||||||||||||||||||||| || ||||||||||  ||||||| ||||||||| ||||||||||||||    
T  26174994 ctatagctgctatttgacaacatattatactaaatagtgtatcgcagaacaatagc-atttgttcaaattt 26174925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 279 - 360
Target Start/End: Complemental strand, 11530108 - 11530027
Alignment:
Q  279 tatagcgcctctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttc 360  Q
    ||||| ||| ||||||| ||||||| |||| ||| ||||||||||||  ||||||| |||||||| ||||||||||||||||    
T  11530108 tatagtgccactatagccgctatttcacaatattatgtactaaatagtgtatcgcagaacaatagtgatttgttcaaatttc 11530027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 298 - 357
Target Start/End: Original strand, 41631885 - 41631944
Alignment:
Q  298 ctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaat 357  Q
    ||||| ||||||| || ||||||||||||||||| |||||||||||| ||||||||||||    
T  41631885 ctattcgacaacacttcgtactaaatagcatatcacaaaacaatagcaatttgttcaaat 41631944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 279 - 354
Target Start/End: Original strand, 42616723 - 42616798
Alignment:
Q  279 tatagcgcctctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttca 354  Q
    ||||| ||| ||||| |||||||||||||||| ||||||||||||||   ||||||||||||||| | ||||||||    
T  42616723 tatagtgccactataactgctatttgacaacactttgtactaaatagtggatcgcaaaacaatagtggtttgttca 42616798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 269 - 363
Target Start/End: Original strand, 17442941 - 17443035
Alignment:
Q  269 acaatagtattatagcgcctctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcact 363  Q
    |||||||| |||||||||| |||||| |||||||| ||||||||||| |||||||| | ||   |  ||||||||| ||||||||||||| ||||    
T  17442941 acaatagttttatagcgccactatagatgctatttcacaacattttgcactaaatatcgtaattctgaacaatagcaatttgttcaaattccact 17443035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 294 - 374
Target Start/End: Original strand, 44458225 - 44458305
Alignment:
Q  294 gctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctatagtg 374  Q
    ||||||||||||||| | |||||||||||||   ||||||  |||||||||| ||||||| |||| ||||| |||||||||    
T  44458225 gctgctatttgacaatactttgtactaaatattgtatcgcggaacaatagcggtttgttcgaattccactatgctatagtg 44458305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 295 - 358
Target Start/End: Original strand, 4204949 - 4205011
Alignment:
Q  295 ctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt 358  Q
    |||||||||||||||||||| |||||||||||||||| |  |||||||||| ||| ||||||||    
T  4204949 ctgctatttgacaacatttt-tactaaatagcatatcacggaacaatagcggttttttcaaatt 4205011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 287 - 342
Target Start/End: Complemental strand, 18569490 - 18569435
Alignment:
Q  287 ctctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaata 342  Q
    ||||||||| |||||||||||||| ||| |||||||||||||||| || |||||||    
T  18569490 ctctatagcggctatttgacaacactttatactaaatagcatatcacagaacaata 18569435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 258 - 365
Target Start/End: Original strand, 31790447 - 31790554
Alignment:
Q  258 aattccgctatacaatagtattatagcgcctctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaat 357  Q
    ||||| ||||| ||||| |  ||||||||| ||||| |  |||| |||||||||||| ||||||||||  ||| ||| |||||||||  ||||| |||||    
T  31790447 aattctgctatgcaatactgatatagcgccactatatccactatatgacaacattttatactaaatagtgtatggcagaacaatagctgtttgtccaaat 31790546  T
Q  358 ttcactac 365  Q
    ||||||||    
T  31790547 ttcactac 31790554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 296 - 367
Target Start/End: Complemental strand, 39597639 - 39597568
Alignment:
Q  296 tgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgc 367  Q
    |||||||| |||| ||||||||||||||||| ||||||  |||||||||||||| || ||||| | ||||||    
T  39597639 tgctatttcacaatattttgtactaaatagcgtatcgcggaacaatagcgatttatttaaattccgctacgc 39597568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 302 - 372
Target Start/End: Original strand, 20547095 - 20547165
Alignment:
Q  302 ttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctatag 372  Q
    ||||||||||||||| ||||| ||||||| ||| |||||| ||||||| |||||||| ||| || ||||||    
T  20547095 ttgacaacattttgtgctaaagagcatattgcagaacaatggcgatttcttcaaattccacaaccctatag 20547165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 270 - 358
Target Start/End: Original strand, 2045047 - 2045133
Alignment:
Q  270 caatagtattatagcgcctctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt 358  Q
    |||||||||| ||| ||| ||||||||||||||||| || ||||  ||||||||||  |||  |||||||||| |||| ||||||||||    
T  2045047 caatagtattttagagccactatagctgctatttgataatattt--tactaaatagtgtataacaaaacaataacgatgtgttcaaatt 2045133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 301 - 359
Target Start/End: Complemental strand, 11328188 - 11328128
Alignment:
Q  301 tttgacaacattttgtactaa--atagcatatcgcaaaacaatagcgatttgttcaaattt 359  Q
    |||||||||||||||||||||  ||||||||| || | ||||||||||| |||||||||||    
T  11328188 tttgacaacattttgtactaataatagcatattgcgagacaatagcgatatgttcaaattt 11328128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 298 - 343
Target Start/End: Original strand, 28044715 - 28044760
Alignment:
Q  298 ctatttgacaacattttgtactaaatagcatatcgcaaaacaatag 343  Q
    ||||||||||||| |||||||||||| ||||||| |||||||||||    
T  28044715 ctatttgacaacactttgtactaaatcgcatatcacaaaacaatag 28044760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 358
Target Start/End: Complemental strand, 28804405 - 28804336
Alignment:
Q  289 ctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt 358  Q
    ||||||| | |||||||||| | ||||||||||||||| |||    ||||||||||||||||||||||||    
T  28804405 ctatagccgttatttgacaatactttgtactaaatagcttattctgaaacaatagcgatttgttcaaatt 28804336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 280 - 321
Target Start/End: Complemental strand, 32321542 - 32321501
Alignment:
Q  280 atagcgcctctatagctgctatttgacaacattttgtactaa 321  Q
    |||||| | |||||||||||||||||||||||||||||||||    
T  32321542 atagcggcgctatagctgctatttgacaacattttgtactaa 32321501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 297 - 346
Target Start/End: Complemental strand, 33971706 - 33971657
Alignment:
Q  297 gctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcga 346  Q
    |||||||||||||| |||||||||||||| |||| ||| |||||||||||    
T  33971706 gctatttgacaacaatttgtactaaataggatattgcataacaatagcga 33971657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 325
Target Start/End: Original strand, 3110516 - 3110568
Alignment:
Q  273 tagtattatagcgcctctatagctgctatttgacaacattttgtactaaatag 325  Q
    ||||||||||||||| |||||||  ||||||||||||  ||||||||||||||    
T  3110516 tagtattatagcgccgctatagccactatttgacaacgctttgtactaaatag 3110568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 372
Target Start/End: Original strand, 20265521 - 20265605
Alignment:
Q  288 tctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctatag 372  Q
    |||||||| || || |||||||||| | |||||||| || |||||||||||| ||||| | ||| |||||| | |||||||||||    
T  20265521 tctatagcagcaatgtgacaacattgtatactaaattgcgtatcgcaaaacattagcggtgtgtccaaattccgctacgctatag 20265605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 358
Target Start/End: Complemental strand, 29378577 - 29378509
Alignment:
Q  290 tatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt 358  Q
    |||||| |||||| ||||| | ||||||| ||||||| ||||||| ||||||| | |||||||||||||    
T  29378577 tatagccgctattagacaatactttgtacaaaatagcgtatcgcagaacaatatcaatttgttcaaatt 29378509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 353
Target Start/End: Complemental strand, 29728827 - 29728763
Alignment:
Q  289 ctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttc 353  Q
    ||||||| ||||||||| |||| ||||||||| || ||| ||||||||||||||||  |||||||    
T  29728827 ctatagccgctatttgagaacactttgtactacattgcaaatcgcaaaacaatagcagtttgttc 29728763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 294 - 325
Target Start/End: Complemental strand, 12750028 - 12749997
Alignment:
Q  294 gctgctatttgacaacattttgtactaaatag 325  Q
    ||||||||||||||||||||||||||||||||    
T  12750028 gctgctatttgacaacattttgtactaaatag 12749997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 360
Target Start/End: Original strand, 16733711 - 16733773
Alignment:
Q  298 ctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttc 360  Q
    |||||||| |||| | |||||||||||||  |||||| ||||||||| |||| ||||||||||    
T  16733711 ctatttgaaaacactgtgtactaaatagcgaatcgcagaacaatagcaatttattcaaatttc 16733773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 352
Target Start/End: Original strand, 29415748 - 29415802
Alignment:
Q  298 ctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgtt 352  Q
    |||||||||||||||||||||| ||  ||||||| || ||||||||| |||||||    
T  29415748 ctatttgacaacattttgtactgaacggcatatcacagaacaatagcaatttgtt 29415802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 332
Target Start/End: Original strand, 31235209 - 31235251
Alignment:
Q  290 tatagctgctatttgacaacattttgtactaaatagcatatcg 332  Q
    ||||||||||||||||||||| |||| ||||||| ||||||||    
T  31235209 tatagctgctatttgacaacactttgaactaaattgcatatcg 31235251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 358
Target Start/End: Complemental strand, 18104112 - 18104051
Alignment:
Q  297 gctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt 358  Q
    |||||||||||| |||||| ||| |||||  |||||  ||||||||||||||||||| ||||    
T  18104112 gctatttgacaagattttgaactgaatagtgtatcgtgaaacaatagcgatttgttctaatt 18104051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 358
Target Start/End: Original strand, 25694401 - 25694470
Alignment:
Q  289 ctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt 358  Q
    |||||||  |||||||||||||||||||||| |||  | ||||||| ||| ||||||  |||||||||||    
T  25694401 ctatagcgtctatttgacaacattttgtactgaatcacttatcgcagaacgatagcgggttgttcaaatt 25694470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 325
Target Start/End: Complemental strand, 44460393 - 44460364
Alignment:
Q  296 tgctatttgacaacattttgtactaaatag 325  Q
    ||||||||||||||||||||||||||||||    
T  44460393 tgctatttgacaacattttgtactaaatag 44460364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 330
Target Start/End: Original strand, 31246953 - 31246993
Alignment:
Q  290 tatagctgctatttgacaacattttgtactaaatagcatat 330  Q
    |||| ||||||||||||||||||||| ||||||| ||||||    
T  31246953 tataactgctatttgacaacattttgaactaaattgcatat 31246993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 359
Target Start/End: Complemental strand, 32562450 - 32562372
Alignment:
Q  279 tatagcgcctctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaattt 359  Q
    |||||||||| |||||| ||| ||||| ||||  |||||||||||||  ||||||| || ||||||||||| |||||||||    
T  32562450 tatagcgcctttatagc-gctgtttgataacaacttgtactaaatagtgtatcgcagaataatagcgattt-ttcaaattt 32562372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 358
Target Start/End: Original strand, 33623675 - 33623735
Alignment:
Q  298 ctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt 358  Q
    |||| |||||||| ||||||||||||||||||| |   |||||||| |||||||| |||||    
T  33623675 ctatatgacaacactttgtactaaatagcatatagtggaacaatagtgatttgttaaaatt 33623735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 330
Target Start/End: Original strand, 35538056 - 35538104
Alignment:
Q  282 agcgcctctatagctgctatttgacaacattttgtactaaatagcatat 330  Q
    |||||| ||||||| | ||||||||||||||||||| |||| |||||||    
T  35538056 agcgccgctatagccgttatttgacaacattttgtattaaagagcatat 35538104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 326
Target Start/End: Complemental strand, 36300442 - 36300414
Alignment:
Q  298 ctatttgacaacattttgtactaaatagc 326  Q
    |||||||||||||||||||||||||||||    
T  36300442 ctatttgacaacattttgtactaaatagc 36300414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 365
Target Start/End: Complemental strand, 38475936 - 38475860
Alignment:
Q  289 ctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactac 365  Q
    |||||||| |||||| |||||| ||||  ||| ||||||||||||  |||||||||||||  ||||| || ||||||    
T  38475936 ctatagctactatttaacaacactttgacctacatagcatatcgcggaacaatagcgattgattcaagttccactac 38475860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 358
Target Start/End: Original strand, 42172801 - 42172865
Alignment:
Q  294 gctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt 358  Q
    |||||||||||||||||||||||| | | |||| ||| ||| ||| | | |||||||||||||||    
T  42172801 gctgctatttgacaacattttgtaattactagcgtatggcagaactacaacgatttgttcaaatt 42172865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 289 - 357
Target Start/End: Complemental strand, 25252109 - 25252041
Alignment:
Q  289 ctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaat 357  Q
    ||||||||| |||| ||||||||||||||||||||||| |||| | |||||| ||||||||||||||||    
T  25252109 ctatagctgttattagacaacattttgtactaaatagcgtatcacgaaacaagagcgatttgttcaaat 25252041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 298 - 370
Target Start/End: Original strand, 32251006 - 32251078
Alignment:
Q  298 ctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctat 370  Q
    |||||| ||| |||||||||||||||||| ||| ||| |||||||||||| ||||||||||||| ||||||||    
T  32251006 ctatttcacagcattttgtactaaatagcttattgcataacaatagcgatgtgttcaaatttcagtacgctat 32251078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 279 - 354
Target Start/End: Original strand, 50402635 - 50402710
Alignment:
Q  279 tatagcgcctctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttca 354  Q
    ||||||||  |||||||||||||||||||||| ||| ||||||||||||||| ||  |||||||| ||||||||||    
T  50402635 tatagcgcagctatagctgctatttgacaacactttatactaaatagcatattgcggaacaatagtgatttgttca 50402710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 289 - 358
Target Start/End: Complemental strand, 43381245 - 43381176
Alignment:
Q  289 ctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt 358  Q
    |||||||| |||||||||||||||||||| ||||| |||||||||  || ||||||||||| ||||||||    
T  43381245 ctatagcttctatttgacaacattttgtattaaattgcatatcgcggaataatagcgatttattcaaatt 43381176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 294 - 358
Target Start/End: Complemental strand, 15802637 - 15802573
Alignment:
Q  294 gctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt 358  Q
    ||||||||||||||||| ||||||||| ||| ||||||||  || ||||||||||||||||||||    
T  15802637 gctgctatttgacaacactttgtactatataacatatcgcggaagaatagcgatttgttcaaatt 15802573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 289 - 372
Target Start/End: Original strand, 38692427 - 38692510
Alignment:
Q  289 ctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctatag 372  Q
    ||||||| |||||||||||||| |||||||||||| |  ||| |||||||| ||||| |||||||||||| | |||| ||||||    
T  38692427 ctatagccgctatttgacaacactttgtactaaatcgtgtattgcaaaacactagcggtttgttcaaattccgctaccctatag 38692510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 258 - 333
Target Start/End: Original strand, 50251516 - 50251591
Alignment:
Q  258 aattccgctatacaatagtattatagcgcctctatagctgctatttgacaacattttgtactaaatagcatatcgc 333  Q
    |||||||||| |||||| |  | |||||||  |||||| |||||||||||||||||| ||||||||||||||||||    
T  50251516 aattccgctacacaataatgctttagcgccgttatagcagctatttgacaacattttctactaaatagcatatcgc 50251591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 297 - 344
Target Start/End: Original strand, 53855744 - 53855791
Alignment:
Q  297 gctatttgacaacattttgtactaaatagcatatcgcaaaacaatagc 344  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||    
T  53855744 gctatttgacaacattttgtactaaatagcatattgcagaacaatagc 53855791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 297 - 375
Target Start/End: Complemental strand, 21754299 - 21754221
Alignment:
Q  297 gctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctatagtgg 375  Q
    |||||||||||||| ||||||||||||||  ||||||  ||||||||||||||||  ||||||| ||||  ||||||||    
T  21754299 gctatttgacaacaatttgtactaaatagtgtatcgcggaacaatagcgatttgtctaaatttcgctacaatatagtgg 21754221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 299 - 356
Target Start/End: Complemental strand, 25490602 - 25490545
Alignment:
Q  299 tatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaa 356  Q
    |||||||||||||||||||||||||| |||||| || | |||||| ||||||||||||    
T  25490602 tatttgacaacattttgtactaaatatcatatcacagatcaatagtgatttgttcaaa 25490545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 304 - 372
Target Start/End: Complemental strand, 14200053 - 14199985
Alignment:
Q  304 gacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctatag 372  Q
    ||||||| ||||||| ||||||||||||||| |||| ||||  |||||||||||| ||||| |||||||    
T  14200053 gacaacactttgtaccaaatagcatatcgcagaacattagcagtttgttcaaattacactaagctatag 14199985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 298 - 374
Target Start/End: Original strand, 48236287 - 48236363
Alignment:
Q  298 ctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctatagtg 374  Q
    |||||||||||||||||  ||||||||||||||| | ||| || || |||||||||||||||| ||| | |||||||    
T  48236287 ctatttgacaacattttacactaaatagcatatcccgaaataacagtgatttgttcaaatttcgctatgttatagtg 48236363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 298 - 372
Target Start/End: Original strand, 10275819 - 10275894
Alignment:
Q  298 ctatttgacaacatttt-gtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctatag 372  Q
    ||||||||||| ||||| ||| |||||||||||||||| ||||| |  |||||||||||||| ||||| |||||||    
T  10275819 ctatttgacaatatttttgtaataaatagcatatcgcagaacaacaatgatttgttcaaattccactatgctatag 10275894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 298 - 360
Target Start/End: Original strand, 2990983 - 2991045
Alignment:
Q  298 ctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttc 360  Q
    ||||||||||||||||||||||||||||| |||||   ||||| ||  |||||||||||||||    
T  2990983 ctatttgacaacattttgtactaaatagcgtatcgtggaacaaaagaaatttgttcaaatttc 2991045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 298 - 364
Target Start/End: Complemental strand, 6994393 - 6994327
Alignment:
Q  298 ctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcacta 364  Q
    ||||||||||||||| ||| |||||||||||||| || |||||||| | |||||| ||||| |||||    
T  6994393 ctatttgacaacattctgtgctaaatagcatatcccataacaatagtgttttgtttaaattccacta 6994327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 358
Target Start/End: Complemental strand, 11338573 - 11338510
Alignment:
Q  297 gctatttgacaacattttgtac--taaatagcatatcgcaaaacaatagcgatttgttcaaatt 358  Q
    |||||||||||||||||||||   |||||||||||||||| ||||| ||||| |||| ||||||    
T  11338573 gctatttgacaacattttgtatattaaatagcatatcgcagaacaacagcgacttgtccaaatt 11338510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 357
Target Start/End: Original strand, 16169188 - 16169232
Alignment:
Q  313 ttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaat 357  Q
    ||||||| |||||||||||||| ||||||||||||| ||||||||    
T  16169188 ttgtactcaatagcatatcgcagaacaatagcgattagttcaaat 16169232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 356
Target Start/End: Complemental strand, 29279293 - 29279205
Alignment:
Q  269 acaatagtattatagcgcctctatagctgctatttgacaacattttgtact-aaatagcatatcgcaaaacaatagcgatttgttcaaa 356  Q
    |||||||| |||||||||| | ||||| ||||||||||||| |  |||| | ||||| |||||| | ||||||||| ||||||||||||    
T  29279293 acaatagtgttatagcgccgccatagccgctatttgacaacttgctgtattaaaatatcatatcacgaaacaatagtgatttgttcaaa 29279205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 358
Target Start/End: Original strand, 31386057 - 31386136
Alignment:
Q  278 ttatagcgcctctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt 358  Q
    ||||||||  |||||||||| |||||||||||| |||| |||||||| | |||| ||||||| || | |||||||||||||    
T  31386057 ttatagcggttctatagctgttatttgacaacactttgaactaaataac-tatcacaaaacattaactatttgttcaaatt 31386136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 356
Target Start/End: Complemental strand, 51295736 - 51295684
Alignment:
Q  304 gacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaa 356  Q
    ||||||||||||||||||||||| |||| | |||||||| ||||||| |||||    
T  51295736 gacaacattttgtactaaatagcgtatcacgaaacaataacgatttgatcaaa 51295684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 345
Target Start/End: Original strand, 54842196 - 54842244
Alignment:
Q  297 gctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcg 345  Q
    |||||||||||||||||| ||||||||||| |||| || ||||||||||    
T  54842196 gctatttgacaacattttatactaaatagcgtatcacagaacaatagcg 54842244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 300 - 343
Target Start/End: Original strand, 27016927 - 27016970
Alignment:
Q  300 atttgacaacattttgtactaaatagcatatcgcaaaacaatag 343  Q
    |||||||||||||||||||||||||| ||||| ||||| |||||    
T  27016927 atttgacaacattttgtactaaatagtatatcacaaaataatag 27016970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 356
Target Start/End: Original strand, 20690081 - 20690139
Alignment:
Q  298 ctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaa 356  Q
    |||||||| |||||||||  ||||||||  ||||||  |||||||||||||||||||||    
T  20690081 ctatttgataacattttgctctaaatagtgtatcgccgaacaatagcgatttgttcaaa 20690139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 337
Target Start/End: Complemental strand, 42064218 - 42064160
Alignment:
Q  279 tatagcgcctctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaa 337  Q
    ||||||||| | || || || ||||||||||| |||||||||||||||| |||||||||    
T  42064218 tatagcgccgcaatggcagccatttgacaacactttgtactaaatagcagatcgcaaaa 42064160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 373
Target Start/End: Original strand, 48198079 - 48198141
Alignment:
Q  312 tttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttc-actacgctatagt 373  Q
    ||||||||||||| |||||| || ||||||||||||| ||||||| ||| |||| ||||||||    
T  48198079 tttgtactaaataacatatcacagaacaatagcgattagttcaaaattctactaagctatagt 48198141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 363
Target Start/End: Complemental strand, 1813349 - 1813265
Alignment:
Q  278 ttatagcgcctctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcact 363  Q
    |||||| ||| |||||||  ||||||||||||| || || |||| | |||||||||  |||||||| |||||||||||||| ||||    
T  1813349 ttatagtgccgctatagccactatttgacaacacttcgtgctaa-tggcatatcgcggaacaatagtgatttgttcaaattccact 1813265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 360
Target Start/End: Complemental strand, 24830196 - 24830135
Alignment:
Q  299 tatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttc 360  Q
    |||||||||||||||| ||||||||||  ||| | | |||||||||||||| ||||| ||||    
T  24830196 tatttgacaacattttatactaaatagtgtattgtagaacaatagcgattttttcaactttc 24830135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 375
Target Start/End: Complemental strand, 32954328 - 32954243
Alignment:
Q  290 tatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctatagtgg 375  Q
    ||||||| |||| |||||||||||||||||||||||| ||| |   || || ||| |||||| |||||| | ||| ||||||||||    
T  32954328 tatagcttctatatgacaacattttgtactaaatagcgtattgtggaataaaagcaatttgtccaaattccgctatgctatagtgg 32954243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 325
Target Start/End: Complemental strand, 39544208 - 39544175
Alignment:
Q  292 tagctgctatttgacaacattttgtactaaatag 325  Q
    |||||||| |||||||||||||||||||||||||    
T  39544208 tagctgctctttgacaacattttgtactaaatag 39544175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 343
Target Start/End: Original strand, 43307600 - 43307673
Alignment:
Q  270 caatagtattatagcgcctctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatag 343  Q
    |||||||  ||||||||| ||||| |  |||| | |||||||||||||||||| ||| |||| |||||||||||    
T  43307600 caatagtgctatagcgccactataaccactatctaacaacattttgtactaaacagcgtatcacaaaacaatag 43307673  T

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Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 322
Target Start/End: Original strand, 50376231 - 50376264
Alignment:
Q  289 ctatagctgctatttgacaacattttgtactaaa 322  Q
    ||||||| ||||||||||||||||||||||||||    
T  50376231 ctatagccgctatttgacaacattttgtactaaa 50376264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 358
Target Start/End: Complemental strand, 162963 - 162903
Alignment:
Q  298 ctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt 358  Q
    |||||| |||| |||||||||||||||||  |||||| || |||| | |||||||||||||    
T  162963 ctatttcacaatattttgtactaaatagcgcatcgcagaataataacaatttgttcaaatt 162903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 358
Target Start/End: Complemental strand, 29208325 - 29208265
Alignment:
Q  298 ctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt 358  Q
    |||||| | |||||||||||||||| ||| |||||   ||||||| |||||||||||||||    
T  29208325 ctatttcaaaacattttgtactaaacagcgtatcgtggaacaataacgatttgttcaaatt 29208265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 325
Target Start/End: Complemental strand, 34363284 - 34363256
Alignment:
Q  297 gctatttgacaacattttgtactaaatag 325  Q
    |||||||||||||||||||||||||||||    
T  34363284 gctatttgacaacattttgtactaaatag 34363256  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 39)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 297 - 354
Target Start/End: Original strand, 33120560 - 33120617
Alignment:
Q  297 gctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttca 354  Q
    |||||||||||||||||||||||||||||||||| ||| ||||| | |||||||||||    
T  33120560 gctatttgacaacattttgtactaaatagcatattgcagaacaacaacgatttgttca 33120617  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 298 - 358
Target Start/End: Original strand, 2302706 - 2302766
Alignment:
Q  298 ctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt 358  Q
    |||||||| |||||||||||||||||| ||||||||  ||||||| |||||||||||||||    
T  2302706 ctatttgataacattttgtactaaataacatatcgcctaacaatatcgatttgttcaaatt 2302766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 260 - 372
Target Start/End: Complemental strand, 27483149 - 27483037
Alignment:
Q  260 ttccgctatacaatagtattatagcgcctctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaattt 359  Q
    ||||||| | |||||||  ||||| ||| ||||||| |||||||||||| ||||||||||  ||||| |||| || || ||||||| ||||||||||||     
T  27483149 ttccgctgtgcaatagtgctatagtgccactatagccgctatttgacaatattttgtactggatagcgtatctcagaataatagcggtttgttcaaattc 27483050  T
Q  360 cactacgctatag 372  Q
    | ||||| |||||    
T  27483049 ctctacgttatag 27483037  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 268 - 358
Target Start/End: Complemental strand, 30560179 - 30560088
Alignment:
Q  268 tacaatagtattatagcgcctctatagctgctatttgacaaca-ttttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt 358  Q
    |||||||||  ||||| ||| |||||||||| ||||||||||| |||| ||||||||||  |||||||||||||||| | ||||| ||||||    
T  30560179 tacaatagtgctatagtgccactatagctgcaatttgacaacatttttttactaaatagtgtatcgcaaaacaatagtggtttgtccaaatt 30560088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 294 - 372
Target Start/End: Original strand, 26273036 - 26273114
Alignment:
Q  294 gctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctatag 372  Q
    ||||||||| ||||||| ||||||||||| ||| |||| || |||||||| ||||| |||||||| | |||||||||||    
T  26273036 gctgctattggacaacactttgtactaaacagcgtatcacagaacaatagtgatttattcaaattcctctacgctatag 26273114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 358
Target Start/End: Original strand, 8282849 - 8282910
Alignment:
Q  297 gctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt 358  Q
    ||||||||| ||||||||||| ||||| ||||||| ||| |||||||| |||||||||||||    
T  8282849 gctatttgagaacattttgtaataaatcgcatatcacaagacaatagctatttgttcaaatt 8282910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 279 - 372
Target Start/End: Complemental strand, 21227004 - 21226911
Alignment:
Q  279 tatagcgcctctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctatag 372  Q
    ||||||||  ||||||| ||||||||||||||||||||||| |||||| ||| |   |||||||||  |||||||||||| | ||| |||||||    
T  21227004 tatagcgctactatagcagctatttgacaacattttgtactgaatagcgtatggaggaacaatagctttttgttcaaattccgctatgctatag 21226911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 289 - 374
Target Start/End: Original strand, 37632120 - 37632205
Alignment:
Q  289 ctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctatagtg 374  Q
    ||||||||||||||||| | ||||||||| |||||||| |||||   |||| || |||||||||| |||| ||||||||| |||||    
T  37632120 ctatagctgctatttgataccattttgtaataaatagcgtatcgtggaacagtaacgatttgttccaattccactacgctgtagtg 37632205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 358
Target Start/End: Original strand, 45371098 - 45371159
Alignment:
Q  297 gctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt 358  Q
    |||||||||||||||||||||||||||||||||| ||  |||||||| | ||||| ||||||    
T  45371098 gctatttgacaacattttgtactaaatagcatattgcggaacaatagtggtttgtccaaatt 45371159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 290 - 373
Target Start/End: Complemental strand, 4050511 - 4050427
Alignment:
Q  290 tatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcga-tttgttcaaatttcactacgctatagt 373  Q
    |||| |||||||||||||| |||||| |||||||||||||| |  |||||||| ||| ||| |||||||| | ||||||||||||    
T  4050511 tatacctgctatttgacaatattttggactaaatagcatatggtgaaacaataacgatttttttcaaattccgctacgctatagt 4050427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 374
Target Start/End: Complemental strand, 27400604 - 27400521
Alignment:
Q  291 atagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctatagtg 374  Q
    ||||||| |||||||| | ||||||||||  ||||||||  ||  ||||||||||||||||||||||| ||| | |||||||||    
T  27400604 atagctgttatttgacgatattttgtactttatagcatactgcggaacaatagcgatttgttcaaattccaccatgctatagtg 27400521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 337
Target Start/End: Original strand, 13869826 - 13869884
Alignment:
Q  279 tatagcgcctctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaa 337  Q
    |||||| ||||||| ||  || ||||||||||||||||||||||||||||||| |||||    
T  13869826 tatagcacctctattgccactgtttgacaacattttgtactaaatagcatatcacaaaa 13869884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 297 - 355
Target Start/End: Original strand, 30692459 - 30692517
Alignment:
Q  297 gctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaa 355  Q
    |||||||||||||| ||||||||| ||||||||| |||||||||||  | |||||||||    
T  30692459 gctatttgacaacactttgtactacatagcatatggcaaaacaatattggtttgttcaa 30692517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 279 - 360
Target Start/End: Complemental strand, 29749300 - 29749219
Alignment:
Q  279 tatagcgcctctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttc 360  Q
    ||||||||  ||||| ||||||||| |||||| ||| |||||  || |||||| ||||||||||  ||||||||||||||||    
T  29749300 tatagcgctgctataactgctatttaacaacactttttactagttaacatatcacaaaacaataatgatttgttcaaatttc 29749219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 326
Target Start/End: Original strand, 3556650 - 3556718
Alignment:
Q  258 aattccgctatacaatagtattatagcgcctctatagctgctatttgacaacattttgtactaaatagc 326  Q
    |||||||||| ||||| || |||||||||| || || |  ||||||||||||||||||| |||||||||    
T  3556650 aattccgctacacaatggtgttatagcgccactgtaacaactatttgacaacattttgtgctaaatagc 3556718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 397
Target Start/End: Original strand, 24857327 - 24857430
Alignment:
Q  293 agctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctatagtggctataacgccgctattt 392  Q
    |||| ||||||||||||||||||||| ||||||||||||    || ||| |||||||||| |||||   | | |||||||| |||||| |||||| ||||    
T  24857327 agcttctatttgacaacattttgtacaaaatagcatatcatggaagaatggcgatttgttaaaattctgcaaagctatagt-gctatagcgccgccattt 24857425  T
Q  393 aacaa 397  Q
    |||||    
T  24857426 aacaa 24857430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 363
Target Start/End: Original strand, 40710077 - 40710160
Alignment:
Q  279 tatagcgcctctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcact 363  Q
    |||||| || |||||||||||||| | |||||||||||||| |||| || |||||| |||||||   ||||||||||||| ||||    
T  40710077 tatagcaccactatagctgctattagtcaacattttgtact-aataacacatcgcataacaataataatttgttcaaattccact 40710160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 280 - 370
Target Start/End: Original strand, 13850991 - 13851079
Alignment:
Q  280 atagcgcctctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctat 370  Q
    ||||| ||||||| ||  |||||||| ||||||||||||||||||| ||||| ||||  |||||| | ||| ||||||| | |||||||||    
T  13850991 atagcacctctattgccactatttgataacattttgtactaaatagtatatcacaaa--aatagcaacttgctcaaattcctctacgctat 13851079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 317 - 360
Target Start/End: Complemental strand, 18737733 - 18737690
Alignment:
Q  317 actaaatagcatatcgcaaaacaatagcgatttgttcaaatttc 360  Q
    ||||||||||||||| | |||||||||| |||||||||||||||    
T  18737733 actaaatagcatatcccgaaacaatagcaatttgttcaaatttc 18737690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 299 - 370
Target Start/End: Original strand, 24855531 - 24855602
Alignment:
Q  299 tatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctat 370  Q
    ||||||||||  ||| ||||||||||| |||  ||| |||||||| |||||||||||||| | |||||||||    
T  24855531 tatttgacaatttttagtactaaatagtatactgcagaacaatagtgatttgttcaaattccgctacgctat 24855602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 354
Target Start/End: Original strand, 26445499 - 26445574
Alignment:
Q  279 tatagcgcctctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttca 354  Q
    ||||||||| ||||| |||||||||||||||  ||||||||||||||   ||| | |||||| || ||||||||||    
T  26445499 tatagcgccactataactgctatttgacaacgctttgtactaaatagtggatcacgaaacaaaagtgatttgttca 26445574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 298 - 357
Target Start/End: Original strand, 32616769 - 32616828
Alignment:
Q  298 ctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaat 357  Q
    ||||||||||| | |||||||||||||||||| |||| |||  |||| ||||||||||||    
T  32616769 ctatttgacaatactttgtactaaatagcataacgcagaactgtagcaatttgttcaaat 32616828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 290 - 325
Target Start/End: Complemental strand, 44617732 - 44617697
Alignment:
Q  290 tatagctgctatttgacaacattttgtactaaatag 325  Q
    ||||||||||||||||||||| ||||||||||||||    
T  44617732 tatagctgctatttgacaacactttgtactaaatag 44617697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 364
Target Start/End: Complemental strand, 9112478 - 9112412
Alignment:
Q  298 ctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcacta 364  Q
    |||||| |||| ||| ||||||||||||||||||||| |||||||| ||| || | ||||| |||||    
T  9112478 ctatttcacaatattctgtactaaatagcatatcgcagaacaatagtgatctggttaaattccacta 9112412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 359
Target Start/End: Complemental strand, 12196992 - 12196923
Alignment:
Q  289 ctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaattt 359  Q
    ||||||||||||||| ||||||  |||||||||| | ||||| || ||||||||||| |||||| ||||||    
T  12196992 ctatagctgctattttacaacacattgtactaaaca-catatagcgaaacaatagcggtttgttaaaattt 12196923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 359
Target Start/End: Complemental strand, 12441420 - 12441351
Alignment:
Q  289 ctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaattt 359  Q
    ||||||||||||||| ||||||  |||||||||| | ||||| || ||||||||||| |||||| ||||||    
T  12441420 ctatagctgctattttacaacacattgtactaaaca-catatagcgaaacaatagcggtttgttaaaattt 12441351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 372
Target Start/End: Complemental strand, 2701749 - 2701657
Alignment:
Q  279 tatagcgcctctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctatag 372  Q
    ||||||||| ||||| | |||||  ||||| | ||||||| ||||||||||| ||  |||| |||||||||||||| ||| | |||||||||||    
T  2701749 tatagcgccgctataacggctatc-gacaataatttgtacaaaatagcatattgcggaacattagcgatttgttcatattccgctacgctatag 2701657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 358
Target Start/End: Complemental strand, 4114796 - 4114736
Alignment:
Q  297 gctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt 358  Q
    ||||||||||||||||||||| ||| || | ||||| | |||||||| ||||||||||||||    
T  4114796 gctatttgacaacattttgtagtaacta-cttatcgtagaacaatagtgatttgttcaaatt 4114736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 369
Target Start/End: Original strand, 14928232 - 14928301
Alignment:
Q  300 atttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgcta 369  Q
    ||||||||||| |||||||| |||||| ||||    |||||||  |||||||||||||||||||| ||||    
T  14928232 atttgacaacactttgtacttaatagcgtatcatgtaacaataaagatttgttcaaatttcactaagcta 14928301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 324
Target Start/End: Complemental strand, 16950318 - 16950289
Alignment:
Q  295 ctgctatttgacaacattttgtactaaata 324  Q
    ||||||||||||||||||||||||||||||    
T  16950318 ctgctatttgacaacattttgtactaaata 16950289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 359
Target Start/End: Complemental strand, 42843424 - 42843363
Alignment:
Q  298 ctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaattt 359  Q
    ||||||||||||| ||| |||| |||||| |||| |  ||||||||| ||||||||||||||    
T  42843424 ctatttgacaacaatttatacttaatagcttatcccggaacaatagcaatttgttcaaattt 42843363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 358
Target Start/End: Complemental strand, 44806319 - 44806258
Alignment:
Q  297 gctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt 358  Q
    |||||||||||||| ||||||||||||||| |||||  ||| | ||||  ||||||||||||    
T  44806319 gctatttgacaacactttgtactaaatagcctatcgtgaaatagtagcagtttgttcaaatt 44806258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 374
Target Start/End: Original strand, 1318620 - 1318716
Alignment:
Q  279 tatagcgcctctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcact-acgctatagtg 374  Q
    ||||||| | ||| ||||||||||||||||||| | || ||||||||| ||| ||  |||||||  || ||||||||||| || | |||||||||||    
T  1318620 tatagcgtcactacagctgctatttgacaacatgtagttctaaatagcttattgcggaacaataaggacttgttcaaattccattcacgctatagtg 1318716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 358
Target Start/End: Original strand, 3238297 - 3238345
Alignment:
Q  310 attttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt 358  Q
    |||||||||||| || ||||| ||| ||||||||||||| |||||||||    
T  3238297 attttgtactaattaacatattgcagaacaatagcgattagttcaaatt 3238345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Original strand, 8284356 - 8284420
Alignment:
Q  305 acaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgcta 369  Q
    |||||| ||||||||||| ||| ||||||  |||||| | |||||||||||||| ||||| ||||    
T  8284356 acaacactttgtactaaaaagcgtatcgcggaacaatggtgatttgttcaaattccactatgcta 8284420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 374
Target Start/End: Original strand, 12856408 - 12856481
Alignment:
Q  299 tatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctatagtg 374  Q
    ||||| |||| | ||||||||||||||| ||||| ||  |||| || ||||||||||||| ||||||| |||||||    
T  12856408 tatttaacaatagtttgtactaaatagcgtatcgtaa--caattgcaatttgttcaaattccactacggtatagtg 12856481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 373
Target Start/End: Complemental strand, 14730378 - 14730294
Alignment:
Q  289 ctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctatagt 373  Q
    |||||| ||||||||||||  | |||||||||| ||| |||| | | ||||| |||||| || ||||||||| | ||||||||||    
T  14730378 ctatagatgctatttgacagtactttgtactaagtagtatattgtagaacaacagcgatctgatcaaatttcgccacgctatagt 14730294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 351
Target Start/End: Complemental strand, 39551021 - 39550949
Alignment:
Q  279 tatagcgcctctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgt 351  Q
    ||||| ||| ||||||| |||||||||||||| ||  |||| |||||  |||| ||||||||||||| |||||    
T  39551021 tatagtgccactatagccgctatttgacaacacttcatactcaatagtgtatcacaaaacaatagcggtttgt 39550949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 374
Target Start/End: Original strand, 43935142 - 43935226
Alignment:
Q  290 tatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctatagtg 374  Q
    ||||| |||||||| |||| ||||||| ||||| ||| |||| |  ||||||||  ||||||||||||| ||||| || ||||||    
T  43935142 tatagttgctatttcacaatattttgtgctaaacagcgtatcacggaacaatagtcatttgttcaaattccactatgcaatagtg 43935226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 45)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 289 - 358
Target Start/End: Complemental strand, 415214 - 415145
Alignment:
Q  289 ctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt 358  Q
    |||||||  |||||| ||||||||||||||||||||||| ||| | |||||||||||| |||||||||||    
T  415214 ctatagcaactatttcacaacattttgtactaaatagcaaatcacgaaacaatagcgacttgttcaaatt 415145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 300 - 361
Target Start/End: Complemental strand, 55314554 - 55314493
Alignment:
Q  300 atttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttca 361  Q
    |||||| |||| |||||||||| |||||||||||| ||||||||| ||||||||||||||||    
T  55314554 atttgataacactttgtactaattagcatatcgcagaacaatagcaatttgttcaaatttca 55314493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 298 - 358
Target Start/End: Complemental strand, 13298589 - 13298529
Alignment:
Q  298 ctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt 358  Q
    |||||||||| || |||||||||||||||||||| || |||||||| ||||||||||||||    
T  13298589 ctatttgacagcactttgtactaaatagcatatcacagaacaatagtgatttgttcaaatt 13298529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 289 - 364
Target Start/End: Complemental strand, 50794643 - 50794568
Alignment:
Q  289 ctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcacta 364  Q
    ||||| |||||||||||||||| |||||||||| |||||||  ||| ||||||  ||||||||||||||| |||||    
T  50794643 ctataactgctatttgacaacactttgtactaactagcatagtgcagaacaatgacgatttgttcaaattccacta 50794568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 279 - 345
Target Start/End: Complemental strand, 34581658 - 34581592
Alignment:
Q  279 tatagcgcctctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcg 345  Q
    ||||||||  ||||||| |||||||||||||||||||||||||||||| |||| |  ||||||||||    
T  34581658 tatagcgctactatagccgctatttgacaacattttgtactaaatagcgtatcacggaacaatagcg 34581592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 299 - 352
Target Start/End: Original strand, 2843583 - 2843636
Alignment:
Q  299 tatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgtt 352  Q
    |||||||||||||||||||||||||||  ||||||| |||||||| ||||||||    
T  2843583 tatttgacaacattttgtactaaatagtgtatcgcagaacaatagtgatttgtt 2843636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 279 - 358
Target Start/End: Original strand, 3301608 - 3301687
Alignment:
Q  279 tatagcgcctctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt 358  Q
    ||||||| | ||||||||||||||| |||| || |||||||||||||  ||||||||||||| ||| | || ||||||||    
T  3301608 tatagcgtcactatagctgctatttaacaaaatattgtactaaatagagtatcgcaaaacaacagcaaatttttcaaatt 3301687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 227 - 358
Target Start/End: Complemental strand, 7295176 - 7295045
Alignment:
Q  227 ttgtcaatcgcagaagatagtagtttgtttgaattccgctatacaatagtattatagcgcctctatagctgctatttgacaacattttgtactaaatagc 326  Q
    ||||||||| | ||| |||||||||||||  | |||||| | || | |||| |||||||||| | ||||  ||  |||||||  ||||| | ||||||||    
T  7295176 ttgtcaatcacggaaaatagtagtttgttcaagttccgcgacactacagtactatagcgcctttgtagccacttattgacaatgttttgcattaaatagc 7295077  T
Q  327 atatcgcaaaacaatagcgatttgttcaaatt 358  Q
     |||| ||||||||||| ||||||||||||||    
T  7295076 ctatcacaaaacaatagtgatttgttcaaatt 7295045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 293 - 372
Target Start/End: Complemental strand, 17223482 - 17223403
Alignment:
Q  293 agctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctatag 372  Q
    ||||||||| |||||||| |||||||||||| |  ||||||||||||| | | ||||||| ||||| | |||||||||||    
T  17223482 agctgctatatgacaacaatttgtactaaatcgtgtatcgcaaaacaacaacaatttgttaaaattccgctacgctatag 17223403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 372
Target Start/End: Original strand, 20709960 - 20710031
Alignment:
Q  301 tttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctatag 372  Q
    ||||| |||| |||| |||||||||| ||| ||| ||||||||||||||||||||||| | ||||| |||||    
T  20709960 tttgataacactttgcactaaatagcgtattgcagaacaatagcgatttgttcaaattccgctacgttatag 20710031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 289 - 372
Target Start/End: Complemental strand, 25402909 - 25402826
Alignment:
Q  289 ctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctatag 372  Q
    ||||| ||||||||||||||||||||||| || ||| | ||||   ||||||||||||| ||||||||||   |||||||||||    
T  25402909 ctataactgctatttgacaacattttgtattacatatcgtatcattaaacaatagcgatctgttcaaattctgctacgctatag 25402826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 286 - 349
Target Start/End: Original strand, 31675030 - 31675093
Alignment:
Q  286 cctctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgattt 349  Q
    ||||||||||| | ||||||||||||||||||||||||| | |||| ||| |||||||| ||||    
T  31675030 cctctatagctccaatttgacaacattttgtactaaataacgtatcacaagacaatagcaattt 31675093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 292 - 358
Target Start/End: Original strand, 27722407 - 27722473
Alignment:
Q  292 tagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt 358  Q
    |||||| |||||||||| |||||||||| ||||||||||||   ||||||||| ||| |||||||||    
T  27722407 tagctgatatttgacaatattttgtacttaatagcatatcgtggaacaatagcaattagttcaaatt 27722473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 291 - 353
Target Start/End: Complemental strand, 34417889 - 34417827
Alignment:
Q  291 atagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttc 353  Q
    ||||| |||||||||||||| ||||||||||||||   |||||| ||||||||| ||||||||    
T  34417889 atagcggctatttgacaacactttgtactaaatagaggatcgcagaacaatagctatttgttc 34417827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 280 - 325
Target Start/End: Complemental strand, 3144586 - 3144541
Alignment:
Q  280 atagcgcctctatagctgctatttgacaacattttgtactaaatag 325  Q
    ||||||||||||| ||||| | ||||||||||||||||||||||||    
T  3144586 atagcgcctctatcgctgccagttgacaacattttgtactaaatag 3144541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 298 - 358
Target Start/End: Complemental strand, 37538484 - 37538421
Alignment:
Q  298 ctatttgacaacattttgtacta---aatagcatatcgcaaaacaatagcgatttgttcaaatt 358  Q
    ||||||||||||| |||||| ||   | ||||||| ||||||||||||||||||||||||||||    
T  37538484 ctatttgacaacactttgtaatagtaagtagcataccgcaaaacaatagcgatttgttcaaatt 37538421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 297 - 358
Target Start/End: Original strand, 37579590 - 37579651
Alignment:
Q  297 gctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt 358  Q
    |||||||||||||| || |||||||||||||||||||  ||||||| |||||| || |||||    
T  37579590 gctatttgacaacacttagtactaaatagcatatcgcggaacaataacgatttattaaaatt 37579651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 298 - 363
Target Start/End: Original strand, 48244443 - 48244508
Alignment:
Q  298 ctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcact 363  Q
    ||||||||||||||  ||||||||| ||  ||||||| ||||||||||||||||| ||||| ||||    
T  48244443 ctatttgacaacatactgtactaaacagtgtatcgcagaacaatagcgatttgtttaaattccact 48244508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 278 - 323
Target Start/End: Original strand, 56049770 - 56049815
Alignment:
Q  278 ttatagcgcctctatagctgctatttgacaacattttgtactaaat 323  Q
    |||||||||  |||||||||||||||||||||| ||||||||||||    
T  56049770 ttatagcgctactatagctgctatttgacaacactttgtactaaat 56049815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 337
Target Start/End: Original strand, 1202394 - 1202434
Alignment:
Q  297 gctatttgacaacattttgtactaaatagcatatcgcaaaa 337  Q
    |||||||||||| ||||| ||||||||||||||||||||||    
T  1202394 gctatttgacaatattttatactaaatagcatatcgcaaaa 1202434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 374
Target Start/End: Complemental strand, 1276986 - 1276902
Alignment:
Q  290 tatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctatagtg 374  Q
    ||||||||||||||||||| | ||| |||| || ||| |||| || |||||||| | |||||||||||||| ||| | |||||||    
T  1276986 tatagctgctatttgacaaaactttttactgaacagcgtatcacataacaatagtggtttgttcaaatttccctatgatatagtg 1276902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 358
Target Start/End: Complemental strand, 2562550 - 2562482
Alignment:
Q  290 tatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt 358  Q
    |||||||||||||||||||  |||||||||||| ||| ||||   |||  |||||||||||||||||||    
T  2562550 tatagctgctatttgacaatgttttgtactaaacagcgtatcaggaaattatagcgatttgttcaaatt 2562482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 325
Target Start/End: Complemental strand, 20989561 - 20989525
Alignment:
Q  289 ctatagctgctatttgacaacattttgtactaaatag 325  Q
    ||||||| |||||||||||||||||||||||||||||    
T  20989561 ctatagccgctatttgacaacattttgtactaaatag 20989525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 372
Target Start/End: Original strand, 39032511 - 39032635
Alignment:
Q  248 agtttgtttgaattccgctatacaatagtattatagcgcctctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgat 347  Q
    ||||||||  ||||| ||||  |||||||  ||||||||| || ||||   |||| ||||||||||||||| ||||| |||||| |  | || ||||| |    
T  39032511 agtttgttgaaattctgctacgcaatagtgctatagcgcccctgtagccattattcgacaacattttgtaccaaataacatatcacggagcattagcggt 39032610  T
Q  348 ttgttcaaatttcactacgctatag 372  Q
    ||||||||| | |||||||||||||    
T  39032611 ttgttcaaactccactacgctatag 39032635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 374
Target Start/End: Original strand, 13458783 - 13458866
Alignment:
Q  291 atagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctatagtg 374  Q
    |||| ||| ||||||||||| ||| ||||||||||| |||  |  |||||| | |||||||||||||||||||| | |||||||    
T  13458783 atagttgccatttgacaacactttatactaaatagcgtattacggaacaatggtgatttgttcaaatttcactatgatatagtg 13458866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 290 - 325
Target Start/End: Complemental strand, 18968343 - 18968308
Alignment:
Q  290 tatagctgctatttgacaacattttgtactaaatag 325  Q
    |||||| |||||||||||||||||||||||||||||    
T  18968343 tatagccgctatttgacaacattttgtactaaatag 18968308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 298 - 356
Target Start/End: Original strand, 19062218 - 19062274
Alignment:
Q  298 ctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaa 356  Q
    |||||| |||| | |||||||||||||||||||  ||||||||||| ||||||||||||    
T  19062218 ctattttacaaaactttgtactaaatagcatat--caaaacaatagagatttgttcaaa 19062274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 333 - 372
Target Start/End: Original strand, 39064896 - 39064935
Alignment:
Q  333 caaaacaatagcgatttgttcaaatttcactacgctatag 372  Q
    |||||||||||| ||||||||||||| |||||||||||||    
T  39064896 caaaacaatagcaatttgttcaaattccactacgctatag 39064935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 289 - 356
Target Start/End: Complemental strand, 47789232 - 47789165
Alignment:
Q  289 ctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaa 356  Q
    |||||||  ||||||||||||| ||||||||||||||  ||| ||| ||| ||| |||||||||||||    
T  47789232 ctatagccactatttgacaacagtttgtactaaatagagtattgcagaacgataacgatttgttcaaa 47789165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 357
Target Start/End: Original strand, 26275534 - 26275600
Alignment:
Q  291 atagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaat 357  Q
    ||||| ||||||| |||| ||||||||||||||||| |||     ||||||||||||||||||||||    
T  26275534 atagccgctatttcacaatattttgtactaaatagcgtattttggaacaatagcgatttgttcaaat 26275600  T

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Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 364
Target Start/End: Original strand, 33714228 - 33714294
Alignment:
Q  298 ctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcacta 364  Q
    |||||| |||| |||||||||||||| || |||||   ||||| ||||||||||||||||| |||||    
T  33714228 ctatttcacaatattttgtactaaatggcttatcgtggaacaacagcgatttgttcaaattccacta 33714294  T

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Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 345
Target Start/End: Complemental strand, 34417400 - 34417346
Alignment:
Q  291 atagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcg 345  Q
    ||||| |||||||||||||| |||||||||||||||  |||||  ||||||||||    
T  34417400 atagcggctatttgacaacactttgtactaaatagcggatcgcggaacaatagcg 34417346  T

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Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 359
Target Start/End: Complemental strand, 38596771 - 38596717
Alignment:
Q  305 acaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaattt 359  Q
    |||| |||||||||| |||||  |||||||||||| ||||||||| |||||||||    
T  38596771 acaatattttgtactgaatagtgtatcgcaaaacagtagcgatttcttcaaattt 38596717  T

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Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 326
Target Start/End: Original strand, 4762551 - 4762580
Alignment:
Q  297 gctatttgacaacattttgtactaaatagc 326  Q
    ||||||||||||||||||||||||||||||    
T  4762551 gctatttgacaacattttgtactaaatagc 4762580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 358
Target Start/End: Complemental strand, 9318759 - 9318706
Alignment:
Q  305 acaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt 358  Q
    |||| |||||||||||||||||||||| | ||||||||   |||||||||||||    
T  9318759 acaatattttgtactaaatagcatatcactaaacaatatgaatttgttcaaatt 9318706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 401
Target Start/End: Complemental strand, 27099033 - 27098969
Alignment:
Q  336 aacaatagcgatttgttcaaatttcactacgctatagtggctataacgccgctatttaacaatatt 401  Q
    ||||| ||||||||||||||||| ||||| || ||||| |||  ||||||||||||| ||||||||    
T  27099033 aacaacagcgatttgttcaaattccactaagccatagt-gctgcaacgccgctatttgacaatatt 27098969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 358
Target Start/End: Original strand, 47486045 - 47486106
Alignment:
Q  297 gctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt 358  Q
    ||||||| | || ||||||||||||||||||| ||||  |||||||| | ||||||||||||    
T  47486045 gctatttcaaaatattttgtactaaatagcatgtcgcggaacaatagaggtttgttcaaatt 47486106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 356
Target Start/End: Original strand, 53768201 - 53768266
Alignment:
Q  291 atagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaa 356  Q
    ||||||||||||||||||||  |||||||| |||||| |||    |||||||||| ||||||||||    
T  53768201 atagctgctatttgacaacacgttgtactatatagcagatcatggaacaatagcggtttgttcaaa 53768266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 682030 - 681986
Alignment:
Q  298 ctatttgacaacattttgtactaaatagcatatcgcaaaacaata 342  Q
    |||||||||||||| ||||||||| ||||| |||||| |||||||    
T  682030 ctatttgacaacatgttgtactaactagcacatcgcagaacaata 681986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 372
Target Start/End: Complemental strand, 3625804 - 3625744
Alignment:
Q  312 tttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctatag 372  Q
    ||||||||| | ||| ||| ||| |||||||||||| |||||||||| |||||| ||||||    
T  3625804 tttgtactacacagcgtattgcagaacaatagcgatctgttcaaattccactacactatag 3625744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 334
Target Start/End: Original strand, 8721885 - 8721961
Alignment:
Q  258 aattccgctatacaatagtattatagcgcctctatagctgctatttgacaacattttgtactaaatagcatatcgca 334  Q
    ||||||||||  |||||||   |||||| | |||||||| | ||| ||||| ||||||||||||||||| |||||||    
T  8721885 aattccgctacgcaatagtgccatagcgacactatagcttccattcgacaatattttgtactaaatagcgtatcgca 8721961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 358
Target Start/End: Original strand, 30617270 - 30617329
Alignment:
Q  298 ctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt 358  Q
    |||||| |||| |||||||||||| |||| |||| || |||| ||||||||||||||||||    
T  30617270 ctatttcacaatattttgtactaa-tagcgtatcacagaacactagcgatttgttcaaatt 30617329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 358
Target Start/End: Complemental strand, 34416967 - 34416907
Alignment:
Q  298 ctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt 358  Q
    ||||||||||||| ||||||||||||||   |||||  ||||||||| |||||||| ||||    
T  34416967 ctatttgacaacactttgtactaaatagaggatcgcggaacaatagctatttgttccaatt 34416907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 333
Target Start/End: Original strand, 37854003 - 37854047
Alignment:
Q  289 ctatagctgctatttgacaacattttgtactaaatagcatatcgc 333  Q
    |||||||| |||||| |||| ||||| ||||||||||||||||||    
T  37854003 ctatagcttctatttaacaaaattttatactaaatagcatatcgc 37854047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 325
Target Start/End: Complemental strand, 41367233 - 41367197
Alignment:
Q  289 ctatagctgctatttgacaacattttgtactaaatag 325  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  41367233 ctataactgctatttggcaacattttgtactaaatag 41367197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 262 - 321
Target Start/End: Original strand, 11459 - 11518
Alignment:
Q  262 ccgctatacaatagtattatagcgcctctatagctgctatttgacaacattttgtactaa 321  Q
    |||||| |||||||| |||||||||| |||||| |||||||| ||||||||||| |||||    
T  11459 ccgctacacaatagttttatagcgccactatagatgctatttcacaacattttgcactaa 11518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 262 - 321
Target Start/End: Complemental strand, 4553 - 4494
Alignment:
Q  262 ccgctatacaatagtattatagcgcctctatagctgctatttgacaacattttgtactaa 321  Q
    |||||| |||||||| ||||||| || |||||| |||||||| ||||||||||| |||||    
T  4553 ccgctacacaatagttttatagcaccactatagatgctatttcacaacattttgcactaa 4494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0940 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0940
Description:

Target: scaffold0940; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 291 - 373
Target Start/End: Complemental strand, 2113 - 2031
Alignment:
Q  291 atagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctatagt 373  Q
    ||||| |||||||||||||| |||||| |||||||||||||||| ||||| |  | ||||| |||||||| ||| | ||||||    
T  2113 atagcagctatttgacaacactttgtattaaatagcatatcgcagaacaacaatggtttgtccaaatttcgctatgatatagt 2031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 317 - 360
Target Start/End: Complemental strand, 4432 - 4389
Alignment:
Q  317 actaaatagcatatcgcaaaacaatagcgatttgttcaaatttc 360  Q
    ||||||||||||||| | |||||||||| |||||||||||||||    
T  4432 actaaatagcatatcccgaaacaatagcaatttgttcaaatttc 4389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 324
Target Start/End: Complemental strand, 96735 - 96701
Alignment:
Q  290 tatagctgctatttgacaacattttgtactaaata 324  Q
    |||||| ||||||||||||||||||||||||||||    
T  96735 tatagccgctatttgacaacattttgtactaaata 96701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0898 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0898
Description:

Target: scaffold0898; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 358
Target Start/End: Complemental strand, 594 - 534
Alignment:
Q  297 gctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt 358  Q
    |||||||||||||| ||||||||||||||| |||| || |||||||| | |||||| |||||    
T  594 gctatttgacaacaatttgtactaaatagc-tatcccagaacaatagaggtttgtttaaatt 534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 358
Target Start/End: Original strand, 10608 - 10740
Alignment:
Q  227 ttgtcaatcgcagaagatagtagtttgtttgaattccgctatacaatagtattatagcgcctctatagctgctatttgacaacattttgtactaaatagc 326  Q
    |||| |||||||||| ||||  |||||||  ||||| ||||| ||| |||||||||  |||||||||||  ||| || |||| ||||| |||||| |||     
T  10608 ttgtgaatcgcagaaaatagcggtttgttcaaattctgctatgcaacagtattataatgcctctatagcctctactttacaatattttatactaattagt 10707  T
Q  327 atatcgcaa-aacaatagcgatttgttcaaatt 358  Q
     |||| ||| |||||||  |||||| |||||||    
T  10708 ttatcacaagaacaataatgatttgctcaaatt 10740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 358
Target Start/End: Complemental strand, 13854 - 13786
Alignment:
Q  290 tatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt 358  Q
    |||||||| |||||||||||| | |||||||||  |||||| |   |||||||| ||||||||||||||    
T  13854 tatagctgttatttgacaacactatgtactaaacggcatattgtggaacaatagagatttgttcaaatt 13786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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