View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7380_low_17 (Length: 412)
Name: NF7380_low_17
Description: NF7380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7380_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 16 - 316
Target Start/End: Complemental strand, 24872621 - 24872321
Alignment:
| Q |
16 |
cagataaatcgttgggaggatttaatttttaaaccctaataatacatgatttttgaggataaaattcaatggatttcactcaaattcaaatggaatatac |
115 |
Q |
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| T |
24872621 |
cagagaaatcgttgggaggatttaatttttaaaccctaataatatatgatttttgaggataaaattcaatggatttcactcaaattcaaatggaatatac |
24872522 |
T |
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| Q |
116 |
aaattacaaagtggacaatgatattatacaaaaacaattattaaatcatggaatcgctgtaacataagttgatttccttttgtttatcatattaatttat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
24872521 |
aaattacaaagtggacaatgatattatacaaaaacaattattaaatcatggaatcgctgtaacataagttgatttctttttgtttatcatattaatttat |
24872422 |
T |
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| Q |
216 |
tttcttttggcgtaaacatttgtacacttatgtatattcacatgttcaagtggttacattctgcttgagttcaagtaattgtccatattaaagacagtga |
315 |
Q |
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| T |
24872421 |
tttcttttggcgtaaacatttgtacacttatgtatattcacatgttcaagtggttacattctgcttgagttcaagtaattgtccatattaaagacagtga |
24872322 |
T |
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| Q |
316 |
c |
316 |
Q |
| |
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| T |
24872321 |
c |
24872321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 340 - 401
Target Start/End: Complemental strand, 24872332 - 24872271
Alignment:
| Q |
340 |
aaagacagtgacttttataagctagctaggaccacatttgtaacagcctcacaccttcacca |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||| |
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| T |
24872332 |
aaagacagtgacttttataagctagctaggaccacatttgcatcaacctcacaccttcacca |
24872271 |
T |
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