View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7380_low_19 (Length: 408)
Name: NF7380_low_19
Description: NF7380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7380_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 6 - 360
Target Start/End: Original strand, 32587313 - 32587654
Alignment:
| Q |
6 |
atggttactggacgaatgacgcttggccattgtgccacgacgtgtatgagtggaaaatatgccacgtaggaaaatgagaaatgagagtggggtaacggat |
105 |
Q |
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| T |
32587313 |
atggttactggacgaatgacgcttggccattgtgcgaggacgtgtatgagtggaaaatatgccacgtaggaaaatgagaaatgagagtgggttaacggat |
32587412 |
T |
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| Q |
106 |
cgtaacacgtgcgatgtgaaaaggagtgggaacaaaacaataaagactaacccgtgagccacgctggcctgccttaaacaagattgtcctatagtacgga |
205 |
Q |
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| T |
32587413 |
cgtaacacgtgcgatgtgaaaaggagtgggaacaaaacaataaagactaacccgtgagccacgctggcctgccttaaacaagattgtcctatagtacgga |
32587512 |
T |
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| Q |
206 |
tgcgtgaaatctggtgttgatgttgtatgtaattatattatacggcattttgatttgattttgttacgcttcttccaatcagtcaacattcaaaaatttt |
305 |
Q |
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| T |
32587513 |
tgcgtgaaatctggtggtgatgttgtatgta-----attatacggcattttgatttgattttgttacg---cttccaatcagtcaacattcaaaattttt |
32587604 |
T |
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| Q |
306 |
agtaccatcaataatacctgcactgcactgcacaccattttcacgttctcccatc |
360 |
Q |
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| T |
32587605 |
agtaccatcaataatac-----ctgcactgcacaccattttcacgttctcccatc |
32587654 |
T |
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