View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7380_low_21 (Length: 395)
Name: NF7380_low_21
Description: NF7380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7380_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 14 - 377
Target Start/End: Complemental strand, 26011850 - 26011488
Alignment:
| Q |
14 |
atatatggtttgaacttatcaggaacactttttgggtcaaagtggggtcgtaagaaagttatagtaggagttttatcatcaatgggtagttacgtgttcc |
113 |
Q |
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| T |
26011850 |
atatatggtttgaacttatcaggaacgctttttgggtcaaagtggggtcataagaaagttttagtaggagttttatcatcaatgggtagttacgtgttcc |
26011751 |
T |
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| Q |
114 |
cacaggttagtgtcgataggcttctcatcggcgttcaaagttatgtttgaggaacaagaacctttagaagttttgtatgaagaagacattaaaggagtcg |
213 |
Q |
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| T |
26011750 |
cacaggttagtgtcgataggcttctcatcggcgttcaaagttatgtttgaggaacaagaacctttagaagttttgtatg---aagacattaaaggagtcg |
26011654 |
T |
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| Q |
214 |
ctaaaaacttcaacattttaaagaagaaaatacaaagagtttaagaaacac--agaggaagaaaatgcaaaaggaaatagcattcggaagatagattttt |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26011653 |
ctaaaaacttcaacattttaaagaagaaaatacaaagagtttaagaaacacaaagaggaagaaaatgcaaaaggaaatagcattcggaagatagattttt |
26011554 |
T |
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| Q |
312 |
atagagttgcacttgaaagtgtgctaatgatgaaacgatagtcccaataattttaaaaggtgtgtg |
377 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26011553 |
atagagttgcacttgaaagtgtgctaatgatgaaacgatagtcccaataattttaaaaggtgtgtg |
26011488 |
T |
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