View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7380_low_22 (Length: 391)

Name: NF7380_low_22
Description: NF7380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7380_low_22
NF7380_low_22
[»] chr3 (23 HSPs)
chr3 (18-379)||(2807190-2807551)
chr3 (21-351)||(2759165-2759495)
chr3 (36-352)||(2838472-2838788)
chr3 (36-358)||(2855682-2856004)
chr3 (40-352)||(2769019-2769331)
chr3 (42-340)||(2818519-2818817)
chr3 (37-377)||(5412811-5413151)
chr3 (59-351)||(2748946-2749238)
chr3 (39-374)||(2797289-2797624)
chr3 (178-374)||(2790295-2790491)
chr3 (39-131)||(2790491-2790583)
chr3 (163-233)||(21945658-21945728)
chr3 (163-233)||(22104757-22104827)
chr3 (176-233)||(22648533-22648590)
chr3 (163-233)||(21930455-21930525)
chr3 (163-233)||(22028034-22028104)
chr3 (163-233)||(22034551-22034621)
chr3 (163-233)||(22052767-22052837)
chr3 (163-233)||(22187022-22187092)
chr3 (99-220)||(3721626-3721747)
chr3 (181-233)||(21937187-21937239)
chr3 (181-233)||(22115119-22115171)
chr3 (175-215)||(22621288-22621328)
[»] scaffold0691 (1 HSPs)
scaffold0691 (37-352)||(6025-6340)
[»] chr8 (1 HSPs)
chr8 (163-220)||(27294595-27294652)


Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 18 - 379
Target Start/End: Complemental strand, 2807551 - 2807190
Alignment:
Q  18 caatttgcgtaacttatttggaagagggtcttcagtttcctgacaaaattgctccatcatgtttatcatcaaccctctcacagtgtatgattgagaaact 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2807551 caatttgcgtaacttatttggaagagggtcttcagtttcctgacaaaattgctccatcatgtttatcatcaaccctctcacagtgtatgattgagaaact 2807452  T
Q  118 gcgatgcaagcacggcaatcaaagtgtgttgttaccgtttggctatcaaaaactagcttggcaagagtggtttttcctagacctcccattcctaccaccg 217  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2807451 gcgatgcaagcacgacaatcaaagtgtgttgttaccgtttggctatcaaaaactagcttggcaagagtggtttttcctagacctcccattcctaccaccg 2807352  T
Q  218 aaatcaccgtgcgctcagctacaccctccaataaccaaacagacatttcttctcttgggccttcaaatcctacaatttctctttcttcaataaaaaggga 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  2807351 aaatcaccgtgcgctcagctacaccctccaataaccaaacagacatttcttctcttgggaattcaaatcctacaatttctctttcttcaataaaaaggga 2807252  T
Q  318 agacagtcgaggatcacgccatcttccattttctgtttctctagtgctgttgctgcttgatg 379  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  2807251 agacagtcgaggatcacgccatcttccattttctgtctctctagtgctgttgcggcttgatg 2807190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 21 - 351
Target Start/End: Complemental strand, 2759495 - 2759165
Alignment:
Q  21 tttgcgtaacttatttggaagagggtcttcagtttcctgacaaaattgctccatcatgtttatcatcaaccctctcacagtgtatgattgagaaactgcg 120  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||  || ||||||||||||||||||||||||||| ||    
T  2759495 tttgtgtaacttctttggaagagggtcttcagtttcctgacaaaattgcgccatcatttttatcagtaatcctctcacagtgtatgattgagaaactacg 2759396  T
Q  121 atgcaagcacggcaatcaaagtgtgttgttaccgtttggctatcaaaaactagcttggcaagagtggtttttcctagacctcccattcctaccaccgaaa 220  Q
    ||||||||  | |||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||| || ||||| |||||||||||||| ||||    
T  2759395 atgcaagcttgacaatcaaactgtgttgttaccttttggctgtcaaaaactagcttggcaagagtggttttgccgagaccccccattcctaccactgaaa 2759296  T
Q  221 tcaccgtgcgctcagctacaccctccaataaccaaacagacatttcttctcttgggccttcaaatcctacaatttctctttcttcaataaaaagggaaga 320  Q
    |||| ||||| ||||||  |||||||||||||||| || | | ||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||    
T  2759295 tcactgtgcgttcagctgaaccctccaataaccaaccatatagttcttcttttgggccttcaaatcctacaatttctgtttcttcaatgaaaagggaaga 2759196  T
Q  321 cagtcgaggatcacgccatcttccattttct 351  Q
    |||||||||||||||||||||||||||||||    
T  2759195 cagtcgaggatcacgccatcttccattttct 2759165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 36 - 352
Target Start/End: Original strand, 2838472 - 2838788
Alignment:
Q  36 tggaagagggtcttcagtttcctgacaaaattgctccatcatgtttatcatcaaccctctcacagtgtatgattgagaaactgcgatgcaagcacggcaa 135  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| || |||||||   |||    
T  2838472 tggaagagggtcttcagttccccgacaaaattgctccatcatgtttatcaacaaacctctcacagtgtatgattgagaaactgtgacgcaagcataacaa 2838571  T
Q  136 tcaaagtgtgttgttaccgtttggctatcaaaaactagcttggcaagagtggtttttcctagacctcccattcctaccaccgaaatcaccgtgcgctcag 235  Q
    ||||||| || ||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| || || || ||||||||||    
T  2838572 tcaaagtttgctgttaccttttggctttcaaaaactagcttggcaagagtggtttttcctagaccccccattcctaccactgatatgactgtgcgctcag 2838671  T
Q  236 ctacaccctccaataaccaaacagacatttcttctcttgggccttcaaatcctacaatttctctttcttcaataaaaagggaagacagtcgaggatcacg 335  Q
    || ||||||||||||||||| || | |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||  |    
T  2838672 ctgcaccctccaataaccaaccatatatttcttctcttgggccttcaaatcctacaatttctgtttcttcaatgaaaagggaagacagtcgagggtcgtg 2838771  T
Q  336 ccatcttccattttctg 352  Q
    |||||||||||||||||    
T  2838772 ccatcttccattttctg 2838788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 36 - 358
Target Start/End: Original strand, 2855682 - 2856004
Alignment:
Q  36 tggaagagggtcttcagtttcctgacaaaattgctccatcatgtttatcatcaaccctctcacagtgtatgattgagaaactgcgatgcaagcacggcaa 135  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||| |||    
T  2855682 tggaagagggtcttcagttccccgacaaaattgctccatcatgtttatcaacaaacctctcacagtgtatgattgagaaactgtgatgcaagcacgacaa 2855781  T
Q  136 tcaaagtgtgttgttaccgtttggctatcaaaaactagcttggcaagagtggtttttcctagacctcccattcctaccaccgaaatcaccgtgcgctcag 235  Q
    ||||||| |||||||||| ||||||| ||||||| ||||||||||||||| |||||||||| ||| |||||||| ||||| ||||||||  |||||||||    
T  2855782 tcaaagtttgttgttaccttttggctgtcaaaaattagcttggcaagagtagtttttcctataccccccattcccaccactgaaatcactttgcgctcag 2855881  T
Q  236 ctacaccctccaataaccaaacagacatttcttctcttgggccttcaaatcctacaatttctctttcttcaataaaaagggaagacagtcgaggatcacg 335  Q
     || ||| |||||||||||| |||||| ||||||| ||||||||||||  ||||||| |||| |||||||||| ||||||||||||||||||||||||||    
T  2855882 atataccttccaataaccaaccagacaattcttcttttgggccttcaatgcctacaacttctgtttcttcaatgaaaagggaagacagtcgaggatcacg 2855981  T
Q  336 ccatcttccattttctgtttctc 358  Q
    |||||||||||||||||| ||||    
T  2855982 ccatcttccattttctgtctctc 2856004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 40 - 352
Target Start/End: Complemental strand, 2769331 - 2769019
Alignment:
Q  40 agagggtcttcagtttcctgacaaaattgctccatcatgtttatcatcaaccctctcacagtgtatgattgagaaactgcgatgcaagcacggcaatcaa 139  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  2769331 agaggttcttcagtttcctgacaaaattgctccatcatttttatcagtaaccctctcacagtgtatgattgagaaactgtgatgcaagcacgacaatcaa 2769232  T
Q  140 agtgtgttgttaccgtttggctatcaaaaactagcttggcaagagtggtttttcctagacctcccattcctaccaccgaaatcaccgtgcgctcagctac 239  Q
    ||| ||  |||||| ||||||| ||| ||||||| |||||||||||||||||||||||||| |||||||||||||| || ||||| ||||||| |||| |    
T  2769231 agtttgcagttaccttttggctgtcataaactagtttggcaagagtggtttttcctagaccccccattcctaccactgatatcactgtgcgcttagctgc 2769132  T
Q  240 accctccaataaccaaacagacatttcttctcttgggccttcaaatcctacaatttctctttcttcaataaaaagggaagacagtcgaggatcacgccat 339  Q
    |||||||||||||||| || | | |||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||  |||||||||||||||    
T  2769131 accctccaataaccaaccaaataattcttctcttgggccttccaatcctacaatttctgtttcttcaataaagagggaagacatccgaggatcacgccat 2769032  T
Q  340 cttccattttctg 352  Q
    |||||| ||||||    
T  2769031 cttccactttctg 2769019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 42 - 340
Target Start/End: Complemental strand, 2818817 - 2818519
Alignment:
Q  42 agggtcttcagtttcctgacaaaattgctccatcatgtttatcatcaaccctctcacagtgtatgattgagaaactgcgatgcaagcacggcaatcaaag 141  Q
    ||||||||||| ||||||| |||||||||||||||| |||||||  || ||||||||||||||||||||||||||| |||||||||| || ||||||||     
T  2818817 agggtcttcagcttcctgataaaattgctccatcatttttatcagtaatcctctcacagtgtatgattgagaaactacgatgcaagctcgacaatcaaac 2818718  T
Q  142 tgtgttgttaccgtttggctatcaaaaactagcttggcaagagtggtttttcctagacctcccattcctaccaccgaaatcaccgtgcgctcagctacac 241  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||| |||||||| ||| |||    
T  2818717 tgtgttgttaccttttggctgtcaaaaactagcttggcaagagtggtttttcctagaccccccattcctaccactgatatcactgtgcgctcggctgcac 2818618  T
Q  242 cctccaataaccaaacagacatttcttctcttgggccttcaaatcctacaatttctctttcttcaataaaaagggaagacagtcgaggatcacgccatc 340  Q
    |||||||||||||| || | | ||||||||| ||||||||||||||||| |||||| |||||||||| ||||| |||||||||||||||||||||||||    
T  2818617 cctccaataaccaaccatatagttcttctctcgggccttcaaatcctacgatttctgtttcttcaatgaaaagagaagacagtcgaggatcacgccatc 2818519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 37 - 377
Target Start/End: Complemental strand, 5413151 - 5412811
Alignment:
Q  37 ggaagagggtcttcagtttcctgacaaaattgctccatcatgtttatcatcaaccctctcacagtgtatgattgagaaactgcgatgcaagcacggcaat 136  Q
    ||||||| |||||||||| || ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||  | ||||||||  ||||    
T  5413151 ggaagagagtcttcagttccccgacaaaattgctccatcatgtttatcaacaaacctctcacagtgtatgattgagaaactgttacgcaagcacaacaat 5413052  T
Q  137 caaagtgtgttgttaccgtttggctatcaaaaactagcttggcaagagtggtttttcctagacctcccattcctaccaccgaaatcaccgtgcgctcagc 236  Q
    ||||||||| || |||| ||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||| || || || || || || ||    
T  5413051 caaagtgtgctgataccttttggctttcaaaaactagcttggcaagagtggtttttcctaggccccccattcctaccactgatatgactgtacgttccgc 5412952  T
Q  237 tacaccctccaataaccaaacagacatttcttctcttgggccttcaaatcctacaatttctctttcttcaataaaaagggaagacagtcgaggatcacgc 336  Q
    | |||| |||||||||||| |||||| ||||||| |||| ||||||| |||||||| |||| |||||  ||| || |||||||||||||||||||| |||    
T  5412951 tgcaccatccaataaccaaccagacaattcttcttttggaccttcaattcctacaacttctgtttctgtaatgaatagggaagacagtcgaggatctcgc 5412852  T
Q  337 catcttccattttctgtttctctagtgctgttgctgcttga 377  Q
    ||||||||||||||||| |||||| ||||||||||||||||    
T  5412851 catcttccattttctgtctctctactgctgttgctgcttga 5412811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 59 - 351
Target Start/End: Complemental strand, 2749238 - 2748946
Alignment:
Q  59 gacaaaattgctccatcatgtttatcatcaaccctctcacagtgtatgattgagaaactgcgatgcaagcacggcaatcaaagtgtgttgttaccgtttg 158  Q
    |||| |||||||||||||||||||||| ||| |||||||||||||| ||||||||||||| || ||||||||| ||||||||||||| || |||| |||     
T  2749238 gacagaattgctccatcatgtttatcaacaaacctctcacagtgtaagattgagaaactgtgacgcaagcacgacaatcaaagtgtgctgataccttttt 2749139  T
Q  159 gctatcaaaaactagcttggcaagagtggtttttcctagacctcccattcctaccaccgaaatcaccgtgcgctcagctacaccctccaataaccaaaca 258  Q
    ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||| |||| |||||||||||| ||    
T  2749138 gctttcaaaaactagcttggcaagagtggtttttcctaggcctcccattcctaccacggatatcaccgtgcgctcagcttcaccatccaataaccaacca 2749039  T
Q  259 gacatttcttctcttgggccttcaaatcctacaatttctctttcttcaataaaaagggaagacagtcgaggatcacgccatcttccattttct 351  Q
    |||| ||||||| ||||| ||||||  || |||| |||| |||||||||||||||| |||||||||||||||||| ||||| |||||||||||    
T  2749038 gacagttcttcttttgggacttcaataccaacaacttctgtttcttcaataaaaagagaagacagtcgaggatcatgccattttccattttct 2748946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 39 - 374
Target Start/End: Complemental strand, 2797624 - 2797289
Alignment:
Q  39 aagagggtcttcagtttcctgacaaaattgctccatcatgtttatcatcaaccctctcacagtgtatgattgagaaactgcgatgcaagcacggcaatca 138  Q
    |||||||  |||||||||   |||||||| |||||||||||| ||||  | ||| ||||| ||||||||||||||||||| |||||||||||| ||||||    
T  2797624 aagagggctttcagtttcgctacaaaattcctccatcatgttgatcaatatccccctcacggtgtatgattgagaaactgtgatgcaagcacgacaatca 2797525  T
Q  139 aagtgtgttgttaccgtttggctatcaaaaactagcttggcaagagtggtttttcctagacctcccattcctaccaccgaaatcaccgtgcgctcagcta 238  Q
    || | |||||||||| |||| || || |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||     
T  2797524 aattttgttgttaccttttgactgtcgaaaactagcttggcaagagtggtttttcctagacctcccattccaaccactgaaatcactgtgcgctcagctg 2797425  T
Q  239 caccctccaataaccaaacagacatttcttctcttgggccttcaaatcctacaatttctctttcttcaataaaaagggaagacagtcgaggatcacgcca 338  Q
      ||||| | ||||||| |||||| |||||| || |||||||||||||| |||||| |  |||||||||||||||||||||||||||||||||||| |||    
T  2797424 tgccctctagtaaccaaccagacaattcttccctcgggccttcaaatccgacaattgcagtttcttcaataaaaagggaagacagtcgaggatcacacca 2797325  T
Q  339 tcttccattttctgtttctctagtgctgttgctgct 374  Q
    ||||| ||| || || |||||| |||||||| ||||    
T  2797324 tcttctattatccgtctctctactgctgttgttgct 2797289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 178 - 374
Target Start/End: Complemental strand, 2790491 - 2790295
Alignment:
Q  178 gcaagagtggtttttcctagacctcccattcctaccaccgaaatcaccgtgcgctcagctacaccctccaataaccaaacagacatttcttctcttgggc 277  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||   ||||||||||||||| |||||| |||||| || ||||    
T  2790491 gcaagagtggtttttcctagacctcccattccaaccactgaaatcactgtgcgctcagctgtgccctccaataaccaaccagacaattcttccctcgggc 2790392  T
Q  278 cttcaaatcctacaatttctctttcttcaataaaaagggaagacagtcgaggatcacgccatcttccattttctgtttctctagtgctgttgctgct 374  Q
    |||||||||| |||||| |  |||||||||| |||||||||||||  ||||||||| ||||||||| ||| || || |||||| |||||||||||||    
T  2790391 cttcaaatccgacaattgcagtttcttcaatgaaaagggaagacaaccgaggatcatgccatcttctattgtccgtctctctactgctgttgctgct 2790295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 39 - 131
Target Start/End: Complemental strand, 2790583 - 2790491
Alignment:
Q  39 aagagggtcttcagtttcctgacaaaattgctccatcatgtttatcatcaaccctctcacagtgtatgattgagaaactgcgatgcaagcacg 131  Q
    ||||||| ||||||||||   |||||||| |||||||||||| ||||  | ||| ||||| ||| ||||||||||||| | ||||||||||||    
T  2790583 aagagggccttcagtttcgctacaaaattcctccatcatgttgatcaatatccccctcacggtgaatgattgagaaacggtgatgcaagcacg 2790491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 233
Target Start/End: Complemental strand, 21945728 - 21945658
Alignment:
Q  163 tcaaaaactagcttggcaagagtggtttttcctagacctcccattcctaccaccgaaatcaccgtgcgctc 233  Q
    |||||||||  |||||| ||||||||||||||| | ||||||||||||||||| ||||  || ||||||||    
T  21945728 tcaaaaactttcttggctagagtggtttttccttgccctcccattcctaccacggaaactacagtgcgctc 21945658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 233
Target Start/End: Complemental strand, 22104827 - 22104757
Alignment:
Q  163 tcaaaaactagcttggcaagagtggtttttcctagacctcccattcctaccaccgaaatcaccgtgcgctc 233  Q
    |||||||||  |||||| ||||| ||||||||| | ||||||||||||||||||||||  || ||||||||    
T  22104827 tcaaaaactctcttggctagagttgtttttccttgccctcccattcctaccaccgaaactacagtgcgctc 22104757  T

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Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 176 - 233
Target Start/End: Original strand, 22648533 - 22648590
Alignment:
Q  176 tggcaagagtggtttttcctagacctcccattcctaccaccgaaatcaccgtgcgctc 233  Q
    |||||||||||||||||||||| |||||||| |||||||| || || || ||||||||    
T  22648533 tggcaagagtggtttttcctagccctcccatacctaccacagagatgacagtgcgctc 22648590  T

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Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 233
Target Start/End: Complemental strand, 21930525 - 21930455
Alignment:
Q  163 tcaaaaactagcttggcaagagtggtttttcctagacctcccattcctaccaccgaaatcaccgtgcgctc 233  Q
    |||||||||  |||||| ||||| ||||||||| | ||||||||||||||||| || | ||| ||||||||    
T  21930525 tcaaaaactttcttggctagagttgtttttccttgccctcccattcctaccacagacaccacagtgcgctc 21930455  T

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Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 233
Target Start/End: Complemental strand, 22028104 - 22028034
Alignment:
Q  163 tcaaaaactagcttggcaagagtggtttttcctagacctcccattcctaccaccgaaatcaccgtgcgctc 233  Q
    |||||||||  |||||| ||||| ||||||||| | ||||||||||||||||| || | ||| ||||||||    
T  22028104 tcaaaaactttcttggctagagttgtttttccttgccctcccattcctaccacagacaccacagtgcgctc 22028034  T

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Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 233
Target Start/End: Complemental strand, 22034621 - 22034551
Alignment:
Q  163 tcaaaaactagcttggcaagagtggtttttcctagacctcccattcctaccaccgaaatcaccgtgcgctc 233  Q
    |||||||||  |||||| ||||| ||||||||| | ||||||||||||||||| || | ||| ||||||||    
T  22034621 tcaaaaactttcttggctagagttgtttttccttgccctcccattcctaccacagacaccacagtgcgctc 22034551  T

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Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 233
Target Start/End: Complemental strand, 22052837 - 22052767
Alignment:
Q  163 tcaaaaactagcttggcaagagtggtttttcctagacctcccattcctaccaccgaaatcaccgtgcgctc 233  Q
    |||||||||  |||||| ||||| ||||||||| | ||||||||||||||||  |||| ||| ||||||||    
T  22052837 tcaaaaactttcttggctagagttgtttttccttgccctcccattcctaccagagaaaccacagtgcgctc 22052767  T

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Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 233
Target Start/End: Complemental strand, 22187092 - 22187022
Alignment:
Q  163 tcaaaaactagcttggcaagagtggtttttcctagacctcccattcctaccaccgaaatcaccgtgcgctc 233  Q
    |||||||||  |||||| ||||| ||||||||| | ||||||||||||||||| ||||  || ||||||||    
T  22187092 tcaaaaactttcttggctagagttgtttttccttgccctcccattcctaccacagaaagaacagtgcgctc 22187022  T

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Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 220
Target Start/End: Complemental strand, 3721747 - 3721626
Alignment:
Q  99 agtgtatgattgagaaactgcgatgcaagcacggcaatcaaagtgtgttgttaccgtttggctatcaaaaactagcttggcaagagtggtttttcctaga 198  Q
    |||||| |||||||||||||  ||| |||  | ||||||||||||  || | |||   ||| ||||||||||  |||| |||||||| |||||||| ||     
T  3721747 agtgtaggattgagaaactgttatgaaagagcagcaatcaaagtggcttttcaccaactggttatcaaaaacatgcttagcaagagttgtttttccgagt 3721648  T
Q  199 cctcccattcctaccaccgaaa 220  Q
    |||||||| |||||||| ||||    
T  3721647 cctcccatgcctaccacagaaa 3721626  T

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Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 233
Target Start/End: Complemental strand, 21937239 - 21937187
Alignment:
Q  181 agagtggtttttcctagacctcccattcctaccaccgaaatcaccgtgcgctc 233  Q
    ||||||||||||||| | ||||||||||||||||| ||||  || ||||||||    
T  21937239 agagtggtttttccttgccctcccattcctaccacagaaacaacagtgcgctc 21937187  T

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Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 233
Target Start/End: Complemental strand, 22115171 - 22115119
Alignment:
Q  181 agagtggtttttcctagacctcccattcctaccaccgaaatcaccgtgcgctc 233  Q
    ||||||||||||||| | ||||||||||||||||| ||||  || ||||||||    
T  22115171 agagtggtttttccttgccctcccattcctaccacagaaagaacagtgcgctc 22115119  T

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Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 215
Target Start/End: Original strand, 22621288 - 22621328
Alignment:
Q  175 ttggcaagagtggtttttcctagacctcccattcctaccac 215  Q
    ||||||||||||| ||||||| | |||||||||||||||||    
T  22621288 ttggcaagagtggattttccttgtcctcccattcctaccac 22621328  T

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Target: scaffold0691 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 37 - 352
Target Start/End: Original strand, 6025 - 6340
Alignment:
Q  37 ggaagagggtcttcagtttcctgacaaaattgctccatcatgtttatcatcaaccctctcacagtgtatgattgagaaactgcgatgcaagcacggcaat 136  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| |  ||||||||||| ||||||| |||||||||||||||||||||||| ||||    
T  6025 ggaagagggtcttcagtttcccgacaaaattgctccatcatgtttatgagtaaccctctcacggtgtatgtttgagaaactgcgatgcaagcacgacaat 6124  T
Q  137 caaagtgtgttgttaccgtttggctatcaaaaactagcttggcaagagtggtttttcctagacctcccattcctaccaccgaaatcaccgtgcgctcagc 236  Q
    |||| |||||||||||| ||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||| || |||||||||||    
T  6125 caaattgtgttgttaccttttggctgtcaaaaactagcttggcaagagtggttttccctatacctcccattcctaccactgaaattacggtgcgctcagc 6224  T
Q  237 tacaccctccaataaccaaacagacatttcttctcttgggccttcaaatcctacaatttctctttcttcaataaaaagggaagacagtcgaggatcacgc 336  Q
    |  || ||||||||||||| || | | ||| |||||||||||||| |||||||||| |||  |||||||||||||||||| ||| | |||||||||||||    
T  6225 tggactctccaataaccaaccatataattcctctcttgggccttcgaatcctacaacttcagtttcttcaataaaaagggcagataatcgaggatcacgc 6324  T
Q  337 catcttccattttctg 352  Q
    ||||||||||||||||    
T  6325 catcttccattttctg 6340  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 27294652 - 27294595
Alignment:
Q  163 tcaaaaactagcttggcaagagtggtttttcctagacctcccattcctaccaccgaaa 220  Q
    |||||||||  |||| | ||||||||||||||| | ||||||||||||||||| ||||    
T  27294652 tcaaaaactttcttgactagagtggtttttccttgtcctcccattcctaccacagaaa 27294595  T

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