View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7380_low_26 (Length: 366)
Name: NF7380_low_26
Description: NF7380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7380_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 2 - 345
Target Start/End: Complemental strand, 51662950 - 51662606
Alignment:
| Q |
2 |
caacctttcaccatacatgttataacgtttcaccttcttgcaaattcttgtctgttaatggaagttttctaacccaaattgacatatacatatactgttt |
101 |
Q |
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| T |
51662950 |
caacctttcaccatacatgttacaacgtttcaccttcttgcagattcttgtctgttaatggaagttttctaacccaaattgacatatacatatactgttt |
51662851 |
T |
|
| Q |
102 |
gaaaccttatgcagaaaaagaacccttcaagattttaagttgnnnnnnncccaaacaaagacatggaaaaattgagtgggatatctttcgcaaattccaa |
201 |
Q |
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| T |
51662850 |
gaaaccttatgcagaaaaagaacacttccagattttaagttgtttttttcccaaataaagacatggaaaaattgagtgggatatctttcgcaaattccaa |
51662751 |
T |
|
| Q |
202 |
ttgaaatcacaattaccaaaataatgtttatgcttctgtatatcaaccaagannnnnnngcaaaggagaatgcactttgtaaattgaataatcttaaaaa |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
51662750 |
ttgaaatcacaattaccaaaataatgtttatgcttctgtatatcaaccaagatttttttgcaaaggagaatgcactttgtaaattgaataatcttaaaaa |
51662651 |
T |
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| Q |
302 |
actatatc-tnnnnnnnncaatacaacaaaaatggaacttgtcga |
345 |
Q |
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|||||||| ||||||||||||||||||||||||||| |
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| T |
51662650 |
actatatcagaaaaaaaacaatacaacaaaaatggaacttgtcga |
51662606 |
T |
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