View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7380_low_27 (Length: 359)
Name: NF7380_low_27
Description: NF7380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7380_low_27 |
 | |
|
| [»] scaffold0286 (1 HSPs) |
| |
|
| [»] chr6 (2 HSPs) |
| |
|
Alignment Details
Target: scaffold0286 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 11 - 359
Target Start/End: Original strand, 18769 - 19117
Alignment:
| Q |
11 |
gtgagatgaatataaaagtaattaaaattgtcgggacactgacg-taaggggtgaccatgatccaaatcaatcctactacccaaactaacacttgttccc |
109 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18769 |
gtgacatgaatataaaagtaattaaaattgtcggtacaatgacggtaaggggggaccatgatccaaatcaatcctactacccaaactaacacttgttccc |
18868 |
T |
|
| Q |
110 |
accagccaaaatactagcgtgaattaacatgcataggggtattttgataatttcacttgaaaacgagcaaaacctttttgataaagagcaagattcaatt |
209 |
Q |
| |
|
|||||| ||||||||||||| | ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
18869 |
accagctaaaatactagcgtaagttaacatgcgtaggggtattttgataatttcacttggaaacgagcaaaacctttttgataaagagcaggattcaatt |
18968 |
T |
|
| Q |
210 |
ataaatgattgggtcggggtggctcatttatgtagttggcccactcgtgctgggctgggtcagaccaacccatttgacacttctacatgcactcactatc |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| || |
|
|
| T |
18969 |
ataaatgattgggtcggggtggctcatttatgtagttggcccactcgtgctgggct-ggtcaggccaacccatttgacacttctacatgcactcactgtc |
19067 |
T |
|
| Q |
310 |
aattagtttaaatatttatttattatcatctttttagctatcaaggctgt |
359 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
19068 |
aattagtttaaatatttatttattattatctttttagctatcaaggctgt |
19117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 11 - 359
Target Start/End: Complemental strand, 2163640 - 2163292
Alignment:
| Q |
11 |
gtgagatgaatataaaagtaattaaaattgtcgggacactgacg-taaggggtgaccatgatccaaatcaatcctactacccaaactaacacttgttccc |
109 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2163640 |
gtgacatgaatataaaagtaattaaaattgtcggtacaatgacggtaaggggggaccatgatccaaatcaatcctactacccaaactaacacttgttccc |
2163541 |
T |
|
| Q |
110 |
accagccaaaatactagcgtgaattaacatgcataggggtattttgataatttcacttgaaaacgagcaaaacctttttgataaagagcaagattcaatt |
209 |
Q |
| |
|
|||||| ||||||||||||| | ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2163540 |
accagctaaaatactagcgtaagttaacatgcgtaggggtattttgataatttcacttggaaacgagcaaaacctttttgataaagagcaggattcaatt |
2163441 |
T |
|
| Q |
210 |
ataaatgattgggtcggggtggctcatttatgtagttggcccactcgtgctgggctgggtcagaccaacccatttgacacttctacatgcactcactatc |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| || |
|
|
| T |
2163440 |
ataaatgattgggtcggggtggctcatttatgtagttggcccactcgtgctgggct-ggtcaggccaacccatttgacacttctacatgcactcactgtc |
2163342 |
T |
|
| Q |
310 |
aattagtttaaatatttatttattatcatctttttagctatcaaggctgt |
359 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
2163341 |
aattagtttaaatatttatttattattatctttttagctatcaaggctgt |
2163292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 11 - 359
Target Start/End: Complemental strand, 2175273 - 2174925
Alignment:
| Q |
11 |
gtgagatgaatataaaagtaattaaaattgtcgggacactgacg-taaggggtgaccatgatccaaatcaatcctactacccaaactaacacttgttccc |
109 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2175273 |
gtgacatgaatataaaagtaattaaaattgtcggtacaatgacggtaaggggggaccatgatccaaatcaatcctactacccaaactaacacttgttccc |
2175174 |
T |
|
| Q |
110 |
accagccaaaatactagcgtgaattaacatgcataggggtattttgataatttcacttgaaaacgagcaaaacctttttgataaagagcaagattcaatt |
209 |
Q |
| |
|
|||||| ||||||||||||| | ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2175173 |
accagctaaaatactagcgtaagttaacatgcgtaggggtattttgataatttcacttggaaacgagcaaaacctttttgataaagagcaggattcaatt |
2175074 |
T |
|
| Q |
210 |
ataaatgattgggtcggggtggctcatttatgtagttggcccactcgtgctgggctgggtcagaccaacccatttgacacttctacatgcactcactatc |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| || |
|
|
| T |
2175073 |
ataaatgattgggtcggggtggctcatttatgtagttggcccactcgtgctgggct-ggtcaggccaacccatttgacacttctacatgcactcactgtc |
2174975 |
T |
|
| Q |
310 |
aattagtttaaatatttatttattatcatctttttagctatcaaggctgt |
359 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
2174974 |
aattagtttaaatatttatttattattatctttttagctatcaaggctgt |
2174925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 54 - 108
Target Start/End: Complemental strand, 1557669 - 1557615
Alignment:
| Q |
54 |
gtaaggggtgaccatgatccaaatcaatcctactacccaaactaacacttgttcc |
108 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
1557669 |
gtaaggggtgaccatgatccaactcaatcctactacccaacctaacacttgttcc |
1557615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 256
Target Start/End: Complemental strand, 33488622 - 33488570
Alignment:
| Q |
205 |
caattataaatgat-tgggtcggggtggctcatttatgtagttggcccactcg |
256 |
Q |
| |
|
||||||||||||| ||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
33488622 |
caattataaatgagatgggtcgggctgactcatttatgtagttggcccactcg |
33488570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 155
Target Start/End: Original strand, 27992299 - 27992332
Alignment:
| Q |
122 |
actagcgtgaattaacatgcataggggtattttg |
155 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |
|
|
| T |
27992299 |
actagcgtgagttaacatgcataggggtattttg |
27992332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University