View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7380_low_31 (Length: 345)
Name: NF7380_low_31
Description: NF7380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7380_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 19 - 339
Target Start/End: Original strand, 42944520 - 42944836
Alignment:
| Q |
19 |
aataaagctactactcaagactaagatttagagagatgagatgtggctgtaaatcaatgaattaagcgagcatcttgtgatgtaaatcaactgatataga |
118 |
Q |
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| T |
42944520 |
aataaagctactactcaagactaagatttagagagatgagatgtggctataaatcaatgaattaagcgagcatcttgtgatgtaaatcaactgatataga |
42944619 |
T |
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| Q |
119 |
tttggttagttagttagttacatctgagcagttaattctattatttctattactaaggagttatcatgtgatcacttgtataagtacaatttacattgat |
218 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42944620 |
tttggtta----gttagttacatctgagcagttaattctattatttctattactaaggagttatcatgtgatcacttgtataagtacaatttacattgat |
42944715 |
T |
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| Q |
219 |
aatgaacaacaaatttcattgagagaaatttttcatctcaaagtaactctcttctatactttctgattcatattgtgtatgtaattgagtgtggtttctt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
42944716 |
aatgaacaacaaatttcattgagagaaatttttcatctcaaaataactctcttctatactttctgtttcatattgtgtatgtaattgagtgtggtttctt |
42944815 |
T |
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| Q |
319 |
aatttcaaacccaacaccaaa |
339 |
Q |
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||||||||||||||||||||| |
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| T |
42944816 |
aatttcaaacccaacaccaaa |
42944836 |
T |
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