View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7380_low_33 (Length: 326)

Name: NF7380_low_33
Description: NF7380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7380_low_33
NF7380_low_33
[»] chr5 (1 HSPs)
chr5 (27-326)||(4996849-4997148)


Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 27 - 326
Target Start/End: Original strand, 4996849 - 4997148
Alignment:
Q  27 aaaaattcacaacatgaaaaaactcattttcattcttctcttttcactactatgttcaaatggaaccaccttttcactctcaagagactatgaaattctt 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4996849 aaaaattcacaacatgaaaaaactcattttcattcttctcttttcactagtatgttcaaatggaaccaccttttcactctcaagagactatgaaattctt 4996948  T
Q  127 cttcatgtaaagaacacacaaattgatgacaaaaacaaaagtctcaatgattggcttccaaacacagatcataatccttgtaactggagaggcataacct 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4996949 cttcatgtaaagaacacacaaattgatgacaaaaacaaaagtctcaatgattggcttccaaacacagatcataatccttgtaactggagaggcataacct 4997048  T
Q  227 gcgattcgtggaataaatccgttgtatcaatcgacctcacagaaaccggtatttatggtgattttccatctaatttctgtcatcttccaacactccaaaa 326  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  4997049 gcgattcgcggaataaatccgttgtatcaatcgacctcacagaaaccggtatttatggtgattttccatctaatttctgtcatattccaacactccaaaa 4997148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University