View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7380_low_34 (Length: 325)
Name: NF7380_low_34
Description: NF7380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7380_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 5490446 - 5490143
Alignment:
| Q |
1 |
tctggctatgattgattaattatgggttacatggaccaagtgggataatagcttttcactattttttctcttccacgtaagctannnnnnnggtttacaa |
100 |
Q |
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| T |
5490446 |
tctggttatgattaattaatcatgggttacatggaccaagtgggataatagcttttcactatttttcctcttccacgtaagctatttttttggtttacaa |
5490347 |
T |
|
| Q |
101 |
gtggatttttctggattgctattctttaggaaagaaacttacacctttgaaagaccttgtgatgcgcaagactcgataaattgagagcttattcgctctg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5490346 |
gtggatttttctggattgctattctttaggaaagaaacttacacctttgaaagaccttgtgatgcgcaagactcgataaattgagagcttattcgctctg |
5490247 |
T |
|
| Q |
201 |
gtaaaaatacaccatcgagtttgggatagcgtaaaggtttggaatagctaaacagaaatgttgctgcagcaagaaggtcaaatatctgatgttgcaatgg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
5490246 |
gtaaaaatacaccatcgagtttgggatagcgtaaaggtttggaatagctaaacagaaatgttgcagcagcaagaaggtcaaatatctgatgttgcaatgg |
5490147 |
T |
|
| Q |
301 |
ctgg |
304 |
Q |
| |
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|||| |
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| T |
5490146 |
ctgg |
5490143 |
T |
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