View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7380_low_36 (Length: 315)
Name: NF7380_low_36
Description: NF7380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7380_low_36 |
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| [»] scaffold0170 (1 HSPs) |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 4 - 262
Target Start/End: Original strand, 10802194 - 10802450
Alignment:
| Q |
4 |
gaacaaaatagaagtatagaacaaataacaaagaaaaaacatggaacaaacttggaggaagtgaagaggagaaggaatgacaatggagactaagagttga |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
10802194 |
gaacaaaatagaagtatagaacaaataacaaagaaaaaacatggaacaaacctggaggaagtgaagaggagaaggaatgaaaatggagactaagagttga |
10802293 |
T |
|
| Q |
104 |
gagaggaagaggcgcaaattaagagagggagaagcaaatgatatgaaattgaaacagagattgagtcactgagagtgggagagtcacgataagttagaga |
203 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||| || || |||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
10802294 |
gagaggaagaggcgcaaattgagagagggagaagcaaatgatatgaaactg-aattgagattgagtcactaagagagggagagtcacgataagttagaga |
10802392 |
T |
|
| Q |
204 |
aggagaagactgaaaaatagaacatttttacacgcctgaacatttgcctcaattttgcc |
262 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
10802393 |
aggagaagactgaaaaatagaacatttttacacg-ctgaacatttgcctcaattttgcc |
10802450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 3 - 262
Target Start/End: Original strand, 13569767 - 13570028
Alignment:
| Q |
3 |
agaacaaaatagaagtatagaacaaataacaaagaaaaaacatggaacaaacttggaggaagtgaagaggagaaggaatgacaatggagactaagagttg |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||| |||||||||||||||||| |
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| T |
13569767 |
agaacaaaatagaagtatagaacaaataacaaagaaaaaacatggaacaaacctggagaaagtgaagaggagagggaatgaaaatggagactaagagttg |
13569866 |
T |
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| Q |
103 |
agagaggaagaggcgcaaattaagagagggagaagc--aaatgatatgaaattgaaacagagattgagtcactgagagtgggagagtcacgataagttag |
200 |
Q |
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||||||||||||||||||||| ||||||| ||| || ||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
13569867 |
agagaggaagaggcgcaaattgagagaggaagaggcgcaaatgatatgaaattgaaatagagattgagtcactaagagagggagagtcacgataagttag |
13569966 |
T |
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| Q |
201 |
agaaggagaagactgaaaaatagaacatttttacacgcctgaacatttgcctcaattttgcc |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13569967 |
agaaggagaagactgaaaaatagaacatttttacacgcctgaacatttgcctcaattttgcc |
13570028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 19 - 144
Target Start/End: Original strand, 44586495 - 44586626
Alignment:
| Q |
19 |
atagaacaaataacaaagaaaa-aacatggaacaaacttggagga-agtgaagaggagaaggaatgacaatggag----actaagagttgagagaggaag |
112 |
Q |
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|||||||||||||||||||||| ||||| |||||||||||||||| |||| |||||||||| ||||| |||||| ||| |||||| ||||||| || |
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| T |
44586495 |
atagaacaaataacaaagaaaataacatagaacaaacttggaggagagtggagaggagaagaaatgaaaatggatgcatactcagagttaagagagggag |
44586594 |
T |
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| Q |
113 |
aggcgcaaattaagagagggagaagcaaatga |
144 |
Q |
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||||| || | ||||||||||| |||||||| |
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| T |
44586595 |
aggcgtaagctgagagagggagaggcaaatga |
44586626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 144
Target Start/End: Original strand, 11843991 - 11844068
Alignment:
| Q |
71 |
ggagaaggaatgacaatggag----actaagagttgagagaggaagaggcgcaaattaagagagggagaagcaaatga |
144 |
Q |
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||||||||||||| ||||||| ||| |||||||||||||| ||||||||| || ||| ||||||| |||||||| |
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| T |
11843991 |
ggagaaggaatgaaaatggaggcagactgagagttgagagagggtgaggcgcaagttgagatagggagaggcaaatga |
11844068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0170 (Bit Score: 163; Significance: 5e-87; HSPs: 1)
Name: scaffold0170
Description:
Target: scaffold0170; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 19 - 262
Target Start/End: Complemental strand, 7971 - 7731
Alignment:
| Q |
19 |
atagaacaaataacaaagaaaaaacatggaacaaacttggaggaagtgaagaggagaaggaatgacaatggagactaagagttgagagaggaagaggcgc |
118 |
Q |
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|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||| |
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| T |
7971 |
atagaaaaaataacaaagaaaaaacatggaacaaacctggaggaagtgaagaggaggaggaatgaaaatggagactgagagttgagagaggaagaggcgc |
7872 |
T |
|
| Q |
119 |
aaattaagagagggagaagcaaatgatatgaaattgaaacagagattgagtcactgagagtgggagagtcacgataagttagagaaggagaagactgaaa |
218 |
Q |
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|||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||| |
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| T |
7871 |
aaattaagagagggagaagcaaatga-----aactgaaacagagattgagtcactgagagagggagagtcacgttaagttagagaaggagaagaccgaaa |
7777 |
T |
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| Q |
219 |
aatagaacattttta--cacgcctgaacatttgcctcaattttgcc |
262 |
Q |
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||||||| |||| || | |||||||||||||||||||||| |||| |
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| T |
7776 |
aatagaaaatttgtatgcgcgcctgaacatttgcctcaattctgcc |
7731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 73 - 262
Target Start/End: Original strand, 25131449 - 25131639
Alignment:
| Q |
73 |
agaaggaatgacaatggagactaagagttgagagaggaagaggcgcaaattaagagagggagaagc--aaatgatatgaaattgaaacagagattgagtc |
170 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||| || ||||||||||||| |||||||||||||||||| |
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| T |
25131449 |
agaaggaatgaaaatggagactaagagttgagagaggaagaggcgcaaattgagagaggaagaggcgcaaatgatatgaaactgaaacagagattgagtc |
25131548 |
T |
|
| Q |
171 |
actgagagtgggagagtcacgataagttagagaaggagaagactgaaaaatagaacatttttacacgcctgaacatttgcctcaattttgcc |
262 |
Q |
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|||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
25131549 |
actgagagagggagagtcactataagttagagaaggagaagactgaaaaatag-acatttttacacgcctgaacatttgcctcaattttgcc |
25131639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 25131034 - 25131110
Alignment:
| Q |
4 |
gaacaaaatagaagtatagaacaaataacaaagaaaaaacatggaacaaacttggaggaagtgaagaggagaaggaa |
80 |
Q |
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|
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
25131034 |
gaacaaaattgaagtatagaacaaataacaaagaaaaaacatggaacaaacctgggggaagtgaagaggagaaggaa |
25131110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 4 - 112
Target Start/End: Complemental strand, 141646 - 141538
Alignment:
| Q |
4 |
gaacaaaatagaagtatagaacaaataacaaagaaaaaacatggaacaaacttggaggaagtgaagaggagaaggaatgacaatggagactaagagttga |
103 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||| ||||||||| |
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| T |
141646 |
gaacaaaatagaagtatagaacaattaacaaagaaaaaacatggaacaaacctcgaggaagtgaagaggagaaggaatgaaaatggagacgaagagttga |
141547 |
T |
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| Q |
104 |
gagaggaag |
112 |
Q |
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|||||||| |
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| T |
141546 |
cagaggaag |
141538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 118
Target Start/End: Complemental strand, 53707393 - 53707339
Alignment:
| Q |
67 |
aagaggagaaggaatgacaatg---gagactaagagttgagagaggaagaggcgc |
118 |
Q |
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||||||||||||||||| |||| |||||| |||||||||||||| |||||||| |
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|
| T |
53707393 |
aagaggagaaggaatgaaaatgaccgagactgagagttgagagagggagaggcgc |
53707339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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