View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7380_low_38 (Length: 269)

Name: NF7380_low_38
Description: NF7380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7380_low_38
NF7380_low_38
[»] chr8 (27 HSPs)
chr8 (13-247)||(4887262-4887499)
chr8 (13-253)||(4826357-4826600)
chr8 (15-253)||(4692147-4692385)
chr8 (13-253)||(4919625-4919869)
chr8 (15-220)||(4684195-4684400)
chr8 (13-253)||(4729113-4729353)
chr8 (13-253)||(4773245-4773493)
chr8 (13-253)||(4739865-4740105)
chr8 (31-220)||(4753008-4753197)
chr8 (13-231)||(4801433-4801655)
chr8 (15-266)||(4708843-4709094)
chr8 (13-237)||(4846736-4846964)
chr8 (15-194)||(4719097-4719276)
chr8 (15-105)||(4791108-4791198)
chr8 (13-93)||(4897799-4897879)
chr8 (13-91)||(4910045-4910123)
chr8 (28-91)||(21436694-21436757)
chr8 (13-90)||(4870126-4870203)
chr8 (13-93)||(10450583-10450663)
chr8 (13-93)||(10455009-10455089)
chr8 (137-229)||(4791422-4791514)
chr8 (150-248)||(4870266-4870364)
chr8 (150-202)||(4897936-4897988)
chr8 (148-200)||(4910180-4910232)
chr8 (147-203)||(10450282-10450338)
chr8 (147-203)||(10454708-10454764)
chr8 (148-202)||(21436814-21436868)
[»] chr5 (1 HSPs)
chr5 (25-77)||(24000639-24000691)


Alignment Details
Target: chr8 (Bit Score: 160; Significance: 2e-85; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 13 - 247
Target Start/End: Original strand, 4887262 - 4887499
Alignment:
Q  13 aatatgttggacggtttcaaatctctatgcataataggtggtttacatccattatgcagatactccaatcctgaaaat---ccagactaagtgcaatgta 109  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||   ||| |||||||||||||||    
T  4887262 aatatgttggatggtttcaaatctctgtgcataataggtggtttacatccattatgcagatactccaatcctgaaaattatccacactaagtgcaatgta 4887361  T
Q  110 agggtacacaacggaagaaagatgttgtcataaacaatacattaccgtgtgctgcatcaactgcaatgttaagtctctcattccagtttaagatcttcgg 209  Q
    |||||||| || | ||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||| |     
T  4887362 agggtacataatgcaagaaagattttgtcataaacaatacattaccatatgctgcatcaactgcaatgttaagtctctcattccaatttaagatctttga 4887461  T
Q  210 attttccactgtatgcaaataggcattagtattgaaat 247  Q
    ||||||||||| ||||| ||||||||| | ||||||||    
T  4887462 attttccactgcatgcatataggcatttgaattgaaat 4887499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 13 - 253
Target Start/End: Original strand, 4826357 - 4826600
Alignment:
Q  13 aatatgttggacggtttcaaatctctatgcataataggtggtttacatccattatgcagatactccaatcctgaaaatccagactaagtgcaatgtaagg 112  Q
    ||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||| ||| ||||||||||||||| || ||||| ||||||||||||    
T  4826357 aatatgttggatggtttcaaatctctatgtaaaataggtggtttacatccattatgcatataatccaatcctgaaaattcacactaattgcaatgtaagg 4826456  T
Q  113 gtacacaacggaag-aaagatgttgtcataaacaatacattaccgtgtgctgcatcaactgcaatgttaagtctctcattccagtttaagatcttcggat 211  Q
    |||||||| | ||| ||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| || |  |    
T  4826457 gtacacaatgcaagaaaagatgctatcataaacaatacattaccttgtgctgcatcaactgcaatgttaagtctctcgttccagtttaagatatttgagt 4826556  T
Q  212 tttccactgtatgcaaatag--gcattagtattgaaattctgaa 253  Q
    ||||||||| ||||||||||   ||||| ||||| |||||||||    
T  4826557 tttccactgcatgcaaatagacacattaatattggaattctgaa 4826600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 15 - 253
Target Start/End: Complemental strand, 4692385 - 4692147
Alignment:
Q  15 tatgttggacggtttcaaatctctatgcataataggtggtttacatccattatgcagatactccaatcctgaaaatccagactaagtgcaatgtaagggt 114  Q
    |||||| || || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || || ||| ||||| ||||| |    
T  4692385 tatgttagaaggcttcaaatctctatgcataataggtggtttacatccattatgcagataatccaatcctgaaaattcacacaaagggcaatataaggct 4692286  T
Q  115 acacaacggaagaaagatgttgtcataaacaatacattaccgtgtgctgcatcaactgcaatgttaagtctctcattccagtttaagatcttcggatttt 214  Q
     || || | |||||| |||||  |||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||| ||||||||  | |  ||||    
T  4692285 gcaaaatgcaagaaatatgtttccataaacaatacattaccatgtgctgcatcaactgcaatcttaagcctctcattccaatttaagatagttgagtttt 4692186  T
Q  215 ccactgtatgcaaataggcattagtattgaaattctgaa 253  Q
    |||||| |||||||||| |||||||  ||||||||||||    
T  4692185 ccactgcatgcaaatagacattagtcatgaaattctgaa 4692147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 13 - 253
Target Start/End: Original strand, 4919625 - 4919869
Alignment:
Q  13 aatatgttggacggtttcaaatctctatgcataataggtggtttacatccattatgcagatactccaatcctg-aaaatccagactaagtgcaatgtaag 111  Q
    |||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||||||| |||||||||| ||||| || ||| ||| |||||||||    
T  4919625 aatatgttggacggcttcaaatctctatgcataataggtggttggcatccattatgcagataatccaatcctgaaaaattcacactgagttcaatgtaag 4919724  T
Q  112 ggtacacaacggaagaaagatgttgtcataaacaatacattaccgtgtgctgcatcaactgcaatgttaagtctctcattccagtttaagatcttcggat 211  Q
    ||||  | |   |||||||| |||| |||||| | ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| || | |     
T  4919725 ggtaggctatacaagaaagaagttgccataaatagtacattaccgtttgctgcatcaactgcaatgttaagtctctcattccattttaagatatttgaag 4919824  T
Q  212 tttccactgtatgcaa---ataggcattagtattgaaattctgaa 253  Q
    ||||| ||| ||||||   |||||||||||| |||||| ||||||    
T  4919825 tttccgctgcatgcaaattataggcattagtcttgaaactctgaa 4919869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 15 - 220
Target Start/End: Complemental strand, 4684400 - 4684195
Alignment:
Q  15 tatgttggacggtttcaaatctctatgcataataggtggtttacatccattatgcagatactccaatcctgaaaatccagactaagtgcaatgtaagggt 114  Q
    |||||| || || ||||||||||||||||| || |||||||| ||||||||||||||||| ||||||||||||||| || |||||| |||||||||| ||    
T  4684400 tatgtttgaaggcttcaaatctctatgcatgatcggtggtttgcatccattatgcagataatccaatcctgaaaattcacactaagggcaatgtaagtgt 4684301  T
Q  115 acacaacggaagaaagatgttgtcataaacaatacattaccgtgtgctgcatcaactgcaatgttaagtctctcattccagtttaagatcttcggatttt 214  Q
     ||||| | |||| | ||  ||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||| |||||||| |||| |||||    
T  4684300 gcacaatgcaagacaaattctgtcataaacaatacattaccttgtgctgcgtcaactgcaatgttaagcctctcattccaatttaagatattcgaatttt 4684201  T
Q  215 ccactg 220  Q
    ||||||    
T  4684200 ccactg 4684195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 13 - 253
Target Start/End: Complemental strand, 4729353 - 4729113
Alignment:
Q  13 aatatgttggacggtttcaaatctctatgcataataggtggtttacatccattatgcagatactccaatcctgaaaatccagactaagtgcaatgtaagg 112  Q
    |||||||| || || |||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||| || |||||| |||||||||||    
T  4729353 aatatgtttgatggcttcaaatctctatgcataataggtggcttacatccattatgaagataatccaatcctgaaaattcacactaagggcaatgtaagg 4729254  T
Q  113 gtacacaacggaagaaagatgttgtcataaacaatacattaccgtgtgctgcatcaactgcaatgttaagtctctcattccagtttaagatcttcggatt 212  Q
    |  ||||| | |||||| ||| || ||||||||||| |||||| |||||||  ||||||||||||||||| |||||||||||  ||||||| || | |||    
T  4729253 gagcacaatgcaagaaacatgctgccataaacaataaattaccatgtgctgtgtcaactgcaatgttaagcctctcattccaacttaagatatttgaatt 4729154  T
Q  213 ttccactgtatgcaaataggcattagtattgaaattctgaa 253  Q
    |||||||| ||| ||| |  ||||||| ||||||| |||||    
T  4729153 ttccactgcatgaaaacatacattagtcttgaaatactgaa 4729113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 13 - 253
Target Start/End: Original strand, 4773245 - 4773493
Alignment:
Q  13 aatatgttggacggtttcaaatctctatgcataataggtggtttacatccattatgcagatactccaatcctgaaaatccagactaagtgcaatgtaagg 112  Q
    |||||||| || ||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||| ||| | | ||||| ||||||||||||    
T  4773245 aatatgtttgaaggtttcaaatctctatgcatagtaggtggtttgcatccattatgcagataatccaatcctgcaaaacaacactaaatgcaatgtaagg 4773344  T
Q  113 gtacacaacggaagaaagatgttgtcataaacaatacatta--------ccgtgtgctgcatcaactgcaatgttaagtctctcattccagtttaagatc 204  Q
     | ||||| | |||||||| | |   ||||| |||||||||        ||||||||||||||||||||||||||||||||||||||||| ||||| ||     
T  4773345 atgcacaatgcaagaaagacgattctataaataatacattaattaattaccgtgtgctgcatcaactgcaatgttaagtctctcattccaatttaacata 4773444  T
Q  205 ttcggattttccactgtatgcaaataggcattagtattgaaattctgaa 253  Q
    || | ||||||||||| |||||||||||||||||| | |||||||||||    
T  4773445 tttgaattttccactgcatgcaaataggcattagtctcgaaattctgaa 4773493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 13 - 253
Target Start/End: Complemental strand, 4740105 - 4739865
Alignment:
Q  13 aatatgttggacggtttcaaatctctatgcataataggtggtttacatccattatgcagatactccaatcctgaaaatccagactaagtgcaatgtaagg 112  Q
    |||||||| || || ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| || |||||| | |||||||||    
T  4740105 aatatgtttgaaggcttcaaatctctatgcataataggaggtttacatccattatgcagataatccaatcctgaaaattcacactaaggggaatgtaagg 4740006  T
Q  113 gtacacaacggaagaaagatgttgtcataaacaatacattaccgtgtgctgcatcaactgcaatgttaagtctctcattccagtttaagatcttcggatt 212  Q
    || ||||| | |||||| ||| |  |||||||||||||||||| |||||||  |||||||||||| |||| |||||||||||  ||||||| || | |||    
T  4740005 gtgcacaatgcaagaaacatgcttccataaacaatacattaccatgtgctgtgtcaactgcaatgctaagcctctcattccaacttaagatatttgaatt 4739906  T
Q  213 ttccactgtatgcaaataggcattagtattgaaattctgaa 253  Q
    |||||||| |||  || |  ||||||| ||||||| |||||    
T  4739905 ttccactgcatgagaacatacattagtcttgaaatactgaa 4739865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 31 - 220
Target Start/End: Complemental strand, 4753197 - 4753008
Alignment:
Q  31 aaatctctatgcataataggtggtttacatccattatgcagatactccaatcctgaaaatccagactaagtgcaatgtaagggtacacaacggaagaaag 130  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  | |||||| ||||||||||||| ||||| | ||||||     
T  4753197 aaatctctatgcataataggtggtttacatccattatgcagataatccaatcctgaaaattgacactaagggcaatgtaagggtgcacaatgcaagaaac 4753098  T
Q  131 atgttgtcataaacaatacattaccgtgtgctgcatcaactgcaatgttaagtctctcattccagtttaagatcttcggattttccactg 220  Q
    ||| || |||||||||||| ||||| |||||||  ||||||||||||||||| |||||||||||  ||||||| || | |||||| ||||    
T  4753097 atgctgccataaacaatactttaccatgtgctgtgtcaactgcaatgttaagcctctcattccaacttaagatatttgaattttctactg 4753008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 13 - 231
Target Start/End: Original strand, 4801433 - 4801655
Alignment:
Q  13 aatatgttggacggtttcaaatctctatgcataataggtggtttacatccattatgcagatactccaatcctgaaaatccagac----taagtgcaatgt 108  Q
    ||||||||||| |  |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||    ||||||| ||||    
T  4801433 aatatgttggaagacttcaaatctctatgcataataggtggtttacacccattatgcagataatccaatcctgaaaatccacactaattaagtgctatgt 4801532  T
Q  109 aagggtacacaacggaagaaagatgttgtcataaacaatacattaccgtgtgctgcatcaactgcaatgttaagtctctcattccagtttaagatcttcg 208  Q
    ||||||||   | | ||||||||| |||  ||||| | ||||||||| |||||||||||||||||||| |||||||||| | ||||||||||||| || |    
T  4801533 aagggtactttatgcaagaaagattttgcaataaatagtacattaccatgtgctgcatcaactgcaattttaagtctcttagtccagtttaagatatttg 4801632  T
Q  209 gattttccactgtatgcaaatag 231  Q
     ||||||||||| ||| ||||||    
T  4801633 aattttccactgcatgaaaatag 4801655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 15 - 266
Target Start/End: Complemental strand, 4709094 - 4708843
Alignment:
Q  15 tatgttggacggtttcaaatctctatgcataataggtggtttacatccattatgcagatactccaatcctgaaaatccagactaagtgcaatgtaagggt 114  Q
    ||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| || | |||| |||||||| ||||    
T  4709094 tatgttggaaggcttcaaatctctatgcatgataggtggtttacatccattatgcagataatccaatcctgaaaattcacattaagggcaatgtacgggt 4708995  T
Q  115 acacaacggaagaaagatgttgtcataaacaatacattaccgtgtgctgcatcaactgcaatgttaagtctctcattccagtttaagatcttcggatttt 214  Q
    ||| || | |||||| |||  | |  ||||||||||||||| || ||||  ||||| ||||||||||| |||| ||||||  ||||| | || | |||||    
T  4708994 acaaaatgcaagaaatatgacgccgaaaacaatacattaccatgggctgtgtcaacagcaatgttaagcctctgattccaacttaaggtatttgaatttt 4708895  T
Q  215 ccactgtatgcaaataggcattagtattgaaattctgaagaagtcttttaaa 266  Q
    | |||| ||||||| |  ||||||  ||||||| ||||| |||  |||||||    
T  4708894 ctactgcatgcaaacatacattagctttgaaatactgaacaagcattttaaa 4708843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 13 - 237
Target Start/End: Original strand, 4846736 - 4846964
Alignment:
Q  13 aatatgttggacggtttcaaatctctatgcataataggtggtttacatccattatgcagatactccaatcctgaaaatcca----gactaagtgcaatgt 108  Q
    ||||||||||| |  |||||||||||||| |||||||||||||| || |||||||||||||| |||||||||||||| |||     | ||||||| ||||    
T  4846736 aatatgttggaagacttcaaatctctatgaataataggtggtttgcacccattatgcagataatccaatcctgaaaacccacaataattaagtgctatgt 4846835  T
Q  109 aagggtacacaacggaagaaagatgttgtcataaacaatacattaccgtgtgctgcatcaactgcaatgttaagtctctcattccagtttaagatcttcg 208  Q
    |||||||  | | | ||||||||| |||  ||||| | ||||||||| |||||||||||||||||||| |||||||||| | |||| |||| ||| || |    
T  4846836 aagggtaatctatgcaagaaagattttgcaataaatagtacattaccatgtgctgcatcaactgcaattttaagtctcttagtccaatttatgatatttg 4846935  T
Q  209 gattttccactgtatgcaaataggcatta 237  Q
     ||||||||||| ||| |||||| |||||    
T  4846936 aattttccactgcatgaaaatagacatta 4846964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 15 - 194
Target Start/End: Complemental strand, 4719276 - 4719097
Alignment:
Q  15 tatgttggacggtttcaaatctctatgcataataggtggtttacatccattatgcagatactccaatcctgaaaatccagactaagtgcaatgtaagggt 114  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  | | |||| | |||| | || |    
T  4719276 tatgttggaaggcttcaaatctctatgcataataggtggtttacatccattatgcagataatccaatcctgaaaattaacattaagggaaatgcacggat 4719177  T
Q  115 acacaacggaagaaagatgttgtcataaacaatacattaccgtgtgctgcatcaactgcaatgttaagtctctcattcca 194  Q
    ||| || | |||||| | |  | || ||||||||||||||| || ||||  ||||||||||||||||| |||||||||||    
T  4719176 acaaaatgcaagaaatacgacgccaaaaacaatacattaccatgggctgtgtcaactgcaatgttaagcctctcattcca 4719097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 15 - 105
Target Start/End: Original strand, 4791108 - 4791198
Alignment:
Q  15 tatgttggacggtttcaaatctctatgcataataggtggtttacatccattatgcagatactccaatcctgaaaatccagactaagtgcaa 105  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||| || ||||||||    
T  4791108 tatgttggaaggcttcaaatctctatgcataataggtggtttacatccattatgtaaataatccaatcctgaaaatccacaccaagtgcaa 4791198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 4897799 - 4897879
Alignment:
Q  13 aatatgttggacggtttcaaatctctatgcataataggtggtttacatccattatgcagatactccaatcctgaaaatcca 93  Q
    ||||||||||  || ||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  4897799 aatatgttggtaggcttcgaatctctatgcataataggtggattacatccattatgcagatattccaatcctgaaaatcca 4897879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 91
Target Start/End: Original strand, 4910045 - 4910123
Alignment:
Q  13 aatatgttggacggtttcaaatctctatgcataataggtggtttacatccattatgcagatactccaatcctgaaaatc 91  Q
    ||||||||||  || ||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  4910045 aatatgttggtaggcttcaaatctctgtgcataatagctggtttacatccattatgcagatattccaatcctgaaaatc 4910123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 28 - 91
Target Start/End: Original strand, 21436694 - 21436757
Alignment:
Q  28 ttcaaatctctatgcataataggtggtttacatccattatgcagatactccaatcctgaaaatc 91  Q
    |||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||    
T  21436694 ttcaaatctctatgcataattgctggtttacatccattatgcagatattccaatcctgaaaatc 21436757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 90
Target Start/End: Original strand, 4870126 - 4870203
Alignment:
Q  13 aatatgttggacggtttcaaatctctatgcataataggtggtttacatccattatgcagatactccaatcctgaaaat 90  Q
    ||||||||||| || |||| ||||||||||||||||||| | ||||| |||||||| |||||||||||||||||||||    
T  4870126 aatatgttggaaggcttcatatctctatgcataataggtagattacacccattatgaagatactccaatcctgaaaat 4870203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 10450663 - 10450583
Alignment:
Q  13 aatatgttggacggtttcaaatctctatgcataataggtggtttacatccattatgcagatactccaatcctgaaaatcca 93  Q
    ||||||||||  || |||||||| ||||||||||| |||||||||||||||| ||| ||||| ||||||||||||||||||    
T  10450663 aatatgttggcaggcttcaaatccctatgcataatcggtggtttacatccatcatgtagatattccaatcctgaaaatcca 10450583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 10455089 - 10455009
Alignment:
Q  13 aatatgttggacggtttcaaatctctatgcataataggtggtttacatccattatgcagatactccaatcctgaaaatcca 93  Q
    ||||||||||  || |||||||| ||||||||||| |||||||||||||||| ||| ||||| ||||||||||||||||||    
T  10455089 aatatgttggcaggcttcaaatccctatgcataatcggtggtttacatccatcatgtagatattccaatcctgaaaatcca 10455009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 229
Target Start/End: Original strand, 4791422 - 4791514
Alignment:
Q  137 tcataaacaatacattaccgtgtgctgcatcaactgcaatgttaagtctctcattccagtttaagatcttcggattttccactgtatgcaaat 229  Q
    ||||||| | ||||||||| | ||||| ||||||||||||||| ||||||||| ||||||| ||||  || | ||||||||||| ||||||||    
T  4791422 tcataaatagtacattaccatatgctgtatcaactgcaatgttgagtctctcagtccagttcaagacatttgaattttccactgcatgcaaat 4791514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 4870266 - 4870364
Alignment:
Q  150 attaccgtgtgctgcatcaactgcaatgttaagtctctcattccagtttaagatcttcggattttccactgtatgcaaataggcattagtattgaaatt 248  Q
    |||||| |||||||||||||||||||| || |||||||||||||| |||||||| |  | ||| ||  ||| | |||||||||||||| | ||||||||    
T  4870266 attaccatgtgctgcatcaactgcaattttgagtctctcattccattttaagatatgtgtattatcatctgcacgcaaataggcattaatcttgaaatt 4870364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 150 - 202
Target Start/End: Original strand, 4897936 - 4897988
Alignment:
Q  150 attaccgtgtgctgcatcaactgcaatgttaagtctctcattccagtttaaga 202  Q
    |||||| |||||||||||||||||||| || |||||||||||||| |||||||    
T  4897936 attaccatgtgctgcatcaactgcaattttgagtctctcattccattttaaga 4897988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 148 - 200
Target Start/End: Original strand, 4910180 - 4910232
Alignment:
Q  148 acattaccgtgtgctgcatcaactgcaatgttaagtctctcattccagtttaa 200  Q
    |||||||| |||||||||||||||||||| || |||||||||||||| |||||    
T  4910180 acattaccatgtgctgcatcaactgcaatttttagtctctcattccattttaa 4910232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 203
Target Start/End: Complemental strand, 10450338 - 10450282
Alignment:
Q  147 tacattaccgtgtgctgcatcaactgcaatgttaagtctctcattccagtttaagat 203  Q
    ||||||||| |||||||||||||| ||||| || |||||||||||||| || |||||    
T  10450338 tacattaccatgtgctgcatcaaccgcaattttgagtctctcattccatttcaagat 10450282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 203
Target Start/End: Complemental strand, 10454764 - 10454708
Alignment:
Q  147 tacattaccgtgtgctgcatcaactgcaatgttaagtctctcattccagtttaagat 203  Q
    ||||||||| |||||||||||||| ||||| || |||||||||||||| || |||||    
T  10454764 tacattaccatgtgctgcatcaaccgcaattttgagtctctcattccatttcaagat 10454708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 202
Target Start/End: Original strand, 21436814 - 21436868
Alignment:
Q  148 acattaccgtgtgctgcatcaactgcaatgttaagtctctcattccagtttaaga 202  Q
    |||||||| | ||||||||||||||| || || |||||||||||||| |||||||    
T  21436814 acattaccatatgctgcatcaactgcgattttgagtctctcattccattttaaga 21436868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 24000691 - 24000639
Alignment:
Q  25 ggtttcaaatctctatgcataataggtggtttacatccattatgcagatactc 77  Q
    |||||||||||||| || || |||| ||| || ||||||||||||||||||||    
T  24000691 ggtttcaaatctctgtggattatagctggcttgcatccattatgcagatactc 24000639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University