View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7380_low_41 (Length: 256)

Name: NF7380_low_41
Description: NF7380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7380_low_41
NF7380_low_41
[»] chr1 (6 HSPs)
chr1 (12-240)||(32158139-32158367)
chr1 (133-215)||(27325191-27325273)
chr1 (105-215)||(27358142-27358252)
chr1 (133-215)||(27350221-27350303)
chr1 (133-219)||(32169062-32169148)
chr1 (133-219)||(32165271-32165357)
[»] chr4 (1 HSPs)
chr4 (106-215)||(44288205-44288314)


Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 12 - 240
Target Start/End: Complemental strand, 32158367 - 32158139
Alignment:
Q  12 aacctgtgaaatactatgtggtgagtttattttgtttgaatctgaacttagttattgttgatgaaatatagttaataatgctaatgttattacacaggtg 111  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32158367 aaccagtgaaatactatgtggtgagtttattttgtttgaatctgaacttagttattgttgatgaaatatagttaataatgctaatgttattacacaggtg 32158268  T
Q  112 gatgcttttactgagttggcgttcaaggggaaccctgcagcagtgtgtttgttagatcaagagaaggatgatgaatggttgcaagtattagcagctgagt 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32158267 gatgcttttactgagttggcgttcaaggggaaccctgcagcagtgtgtttgttagatcaagagaaggatgatgaatggttgcaagtattagcagctgagt 32158168  T
Q  212 tcaacatcaatgttacctgttatttgatt 240  Q
    ||||||||||||||||||| |||||||||    
T  32158167 tcaacatcaatgttacctgctatttgatt 32158139  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 133 - 215
Target Start/End: Complemental strand, 27325273 - 27325191
Alignment:
Q  133 ttcaaggggaaccctgcagcagtgtgtttgttagatcaagagaaggatgatgaatggttgcaagtattagcagctgagttcaa 215  Q
    ||||| ||||| || |||||||||||||| |||||  |||| || ||||||||||||||||||| |||||| ||||| |||||    
T  27325273 ttcaaagggaatccagcagcagtgtgtttcttagaagaagataaagatgatgaatggttgcaagcattagctgctgaattcaa 27325191  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 105 - 215
Target Start/End: Original strand, 27358142 - 27358252
Alignment:
Q  105 acaggtggatgcttttactgagttggcgttcaaggggaaccctgcagcagtgtgtttgttagatcaagagaaggatgatgaatggttgcaagtattagca 204  Q
    |||||||||||| || ||||||   || ||||| ||||| || |||||||| ||||| |||||  |||| || ||||||||||||||||||| ||||||     
T  27358142 acaggtggatgcattcactgagacagcattcaaagggaatccagcagcagtatgtttattagaagaagataaagatgatgaatggttgcaagcattagct 27358241  T
Q  205 gctgagttcaa 215  Q
     ||||||||||    
T  27358242 tctgagttcaa 27358252  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 133 - 215
Target Start/End: Complemental strand, 27350303 - 27350221
Alignment:
Q  133 ttcaaggggaaccctgcagcagtgtgtttgttagatcaagagaaggatgatgaatggttgcaagtattagcagctgagttcaa 215  Q
    ||||| ||||| || |||||||||||||| |||||  |||| || ||||||||||||||||||  |||||| ||||| |||||    
T  27350303 ttcaaagggaatccagcagcagtgtgtttcttagaagaagataaagatgatgaatggttgcaatcattagctgctgaattcaa 27350221  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 133 - 219
Target Start/End: Complemental strand, 32169148 - 32169062
Alignment:
Q  133 ttcaaggggaaccctgcagcagtgtgtttgttagatcaagagaaggatgatgaatggttgcaagtattagcagctgagttcaacatc 219  Q
    ||||| ||||| || ||||||||||||||  ||||  |||| || |||||||||||||||||| || |||| ||||| |||||||||    
T  32169148 ttcaaagggaatccagcagcagtgtgtttactagaagaagataaagatgatgaatggttgcaattagtagctgctgaattcaacatc 32169062  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 219
Target Start/End: Complemental strand, 32165357 - 32165271
Alignment:
Q  133 ttcaaggggaaccctgcagcagtgtgtttgttagatcaagagaaggatgatgaatggttgcaagtattagcagctgagttcaacatc 219  Q
    ||||| ||||| || ||||| |||||||| |||||  |||| || ||||||||||||||||||  | |||| ||||| |||||||||    
T  32165357 ttcaaagggaatccagcagctgtgtgtttattagaagaagataaagatgatgaatggttgcaatcagtagctgctgaattcaacatc 32165271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 106 - 215
Target Start/End: Original strand, 44288205 - 44288314
Alignment:
Q  106 caggtggatgcttttactgagttggcgttcaaggggaaccctgcagcagtgtgtttgttagatcaagagaaggatgatgaatggttgcaagtattagcag 205  Q
    |||||||||||||| |||||||  ||||||||||| ||||||||||||||||||||||||||  |||||| |||||||||||||||||||| ||||||||    
T  44288205 caggtggatgctttcactgagtcagcgttcaagggaaaccctgcagcagtgtgtttgttagaagaagagagggatgatgaatggttgcaagcattagcag 44288304  T
Q  206 ctgagttcaa 215  Q
    ||||||||||    
T  44288305 ctgagttcaa 44288314  T

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