View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7380_low_43 (Length: 250)
Name: NF7380_low_43
Description: NF7380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7380_low_43 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 5490662 - 5490907
Alignment:
| Q |
1 |
aaaaataaaatgaagtgtttcatcaaaataacaaaagtttataacatgaaaattacatcgtggaaccaagtcctattcgtactacaactagattatatgg |
100 |
Q |
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| T |
5490662 |
aaaaataaaatgaagtgtttcatcaaaataacaaaagtttataacatgaaaattacatcgtggaaccaagtcctattcgtactacaactagattatatgg |
5490761 |
T |
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| Q |
101 |
gatgttcttcatgtgtttccgttcaaaataatttggtggacattgacttaattcaaatccatcacccttcacgatgggagccacacttgatgaataatct |
200 |
Q |
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| T |
5490762 |
gatgttcttcatgtgtttccgttcaaaataatttggtggacattgacttaattcaaatccatcagccttcatgatgggagccacacttgatgaataatct |
5490861 |
T |
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| Q |
201 |
ttcatattaaaattaatggtggggatcggcttaattcatctcactc |
246 |
Q |
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| T |
5490862 |
ttcatattaaaattaatggtggggatcggcttaattcatatcactc |
5490907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 1751512 - 1751577
Alignment:
| Q |
17 |
gtttcatcaaaataacaaaagtttataacatgaaaattacatcgtggaaccaagtcctattcgtactaca |
86 |
Q |
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| T |
1751512 |
gtttcatcaaaataacaaaagttta----atgaaaatttaatcgtggaaccaagtcccatccgtactaca |
1751577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 15548015 - 15548067
Alignment:
| Q |
17 |
gtttcatcaaaataacaaaagtttataacatgaaaattacatcgtggaaccaagtcc |
73 |
Q |
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| T |
15548015 |
gtttcatcaaaataacaaaagttta----atgaaaattacatcgtggaaccaagtcc |
15548067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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