View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7380_low_44 (Length: 250)

Name: NF7380_low_44
Description: NF7380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7380_low_44
NF7380_low_44
[»] chr8 (4 HSPs)
chr8 (1-161)||(19793482-19793644)
chr8 (161-195)||(9738731-9738765)
chr8 (158-195)||(3988901-3988938)
chr8 (160-196)||(40102021-40102057)
[»] chr7 (2 HSPs)
chr7 (160-196)||(21752656-21752692)
chr7 (161-196)||(33684679-33684714)
[»] chr4 (7 HSPs)
chr4 (160-196)||(45277118-45277154)
chr4 (161-196)||(53583165-53583200)
chr4 (163-196)||(46911899-46911932)
chr4 (160-188)||(17363228-17363256)
chr4 (160-188)||(31804374-31804402)
chr4 (160-188)||(42915264-42915292)
chr4 (160-196)||(50980600-50980636)
[»] chr2 (2 HSPs)
chr2 (160-196)||(23880093-23880129)
chr2 (162-196)||(34249580-34249614)
[»] chr1 (3 HSPs)
chr1 (160-196)||(31436818-31436854)
chr1 (161-196)||(1615035-1615070)
chr1 (162-196)||(28253015-28253049)
[»] scaffold0155 (1 HSPs)
scaffold0155 (161-196)||(3297-3332)
[»] chr3 (6 HSPs)
chr3 (161-196)||(51410805-51410840)
chr3 (161-195)||(7351444-7351478)
chr3 (162-196)||(8066355-8066389)
chr3 (162-196)||(37303111-37303145)
chr3 (160-196)||(39540233-39540269)
chr3 (39-67)||(51279940-51279968)
[»] chr6 (1 HSPs)
chr6 (162-196)||(8395342-8395376)
[»] scaffold0154 (1 HSPs)
scaffold0154 (147-195)||(9886-9934)
[»] scaffold0115 (1 HSPs)
scaffold0115 (160-188)||(15233-15261)
[»] chr5 (2 HSPs)
chr5 (160-188)||(27340867-27340895)
chr5 (160-188)||(29402180-29402208)


Alignment Details
Target: chr8 (Bit Score: 123; Significance: 3e-63; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 19793644 - 19793482
Alignment:
Q  1 gccagccagagagtgtgcgatagataagc-tatgttataaatgtatcaaaattttaaaatagtttatgatcgtaggatttgttagtcaaataagtctctt 99  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||| || ||| |||||||||||||||||||||||||    
T  19793644 gccagccagagagtgtgcgatagataagcctatattataaatgtatcaaaattttaaaatagtgtataattgtacgatttgttagtcaaataagtctctt 19793545  T
Q  100 acgttaaaatagtctatcaaatatgacattaattcttttcatgtatggatt-atatgatagta 161  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  19793544 acgttaaaatagtctatcaaatatgacattaattctttttatgtatggattgatatgatagta 19793482  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 195
Target Start/End: Complemental strand, 9738765 - 9738731
Alignment:
Q  161 agagaaatgatatttgtacaatcactttctcacaa 195  Q
    ||||||||||||||||||||| |||||||||||||    
T  9738765 agagaaatgatatttgtacaaccactttctcacaa 9738731  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 195
Target Start/End: Original strand, 3988901 - 3988938
Alignment:
Q  158 agtagagaaatgatatttgtacaatcactttctcacaa 195  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  3988901 agtagagaaatgatatttgtacaaccactttctaacaa 3988938  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 40102021 - 40102057
Alignment:
Q  160 tagagaaatgatatttgtacaatcactttctcacaac 196  Q
    |||||||||||||||||||||| |||||| |||||||    
T  40102021 tagagaaatgatatttgtacaaccactttttcacaac 40102057  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 21752656 - 21752692
Alignment:
Q  160 tagagaaatgatatttgtacaatcactttctcacaac 196  Q
    |||||||||||||||||||||||||||||||||||||    
T  21752656 tagagaaatgatatttgtacaatcactttctcacaac 21752692  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 196
Target Start/End: Original strand, 33684679 - 33684714
Alignment:
Q  161 agagaaatgatatttgtacaatcactttctcacaac 196  Q
    ||||||||||||||||||||| ||||||||||||||    
T  33684679 agagaaatgatatttgtacaaccactttctcacaac 33684714  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 196
Target Start/End: Complemental strand, 45277154 - 45277118
Alignment:
Q  160 tagagaaatgatatttgtacaatcactttctcacaac 196  Q
    |||||||||||||||||||||| ||||||||||||||    
T  45277154 tagagaaatgatatttgtacaaccactttctcacaac 45277118  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 196
Target Start/End: Complemental strand, 53583200 - 53583165
Alignment:
Q  161 agagaaatgatatttgtacaatcactttctcacaac 196  Q
    ||||||||||||||||||||| ||||||||||||||    
T  53583200 agagaaatgatatttgtacaaccactttctcacaac 53583165  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 196
Target Start/End: Original strand, 46911899 - 46911932
Alignment:
Q  163 agaaatgatatttgtacaatcactttctcacaac 196  Q
    ||||||||||||| ||||||||||||||||||||    
T  46911899 agaaatgatatttttacaatcactttctcacaac 46911932  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 188
Target Start/End: Original strand, 17363228 - 17363256
Alignment:
Q  160 tagagaaatgatatttgtacaatcacttt 188  Q
    |||||||||||||||||||||||||||||    
T  17363228 tagagaaatgatatttgtacaatcacttt 17363256  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 188
Target Start/End: Complemental strand, 31804402 - 31804374
Alignment:
Q  160 tagagaaatgatatttgtacaatcacttt 188  Q
    |||||||||||||||||||||||||||||    
T  31804402 tagagaaatgatatttgtacaatcacttt 31804374  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 188
Target Start/End: Complemental strand, 42915292 - 42915264
Alignment:
Q  160 tagagaaatgatatttgtacaatcacttt 188  Q
    |||||||||||||||||||||||||||||    
T  42915292 tagagaaatgatatttgtacaatcacttt 42915264  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 50980600 - 50980636
Alignment:
Q  160 tagagaaatgatatttgtacaatcactttctcacaac 196  Q
    ||||||||||||||||||||||||| ||||| |||||    
T  50980600 tagagaaatgatatttgtacaatcattttctaacaac 50980636  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 23880093 - 23880129
Alignment:
Q  160 tagagaaatgatatttgtacaatcactttctcacaac 196  Q
    |||||||||||||||||||||| ||||||||||||||    
T  23880093 tagagaaatgatatttgtacaaccactttctcacaac 23880129  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 196
Target Start/End: Original strand, 34249580 - 34249614
Alignment:
Q  162 gagaaatgatatttgtacaatcactttctcacaac 196  Q
    |||||||||||||||||||| ||||||||||||||    
T  34249580 gagaaatgatatttgtacaaccactttctcacaac 34249614  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 31436818 - 31436854
Alignment:
Q  160 tagagaaatgatatttgtacaatcactttctcacaac 196  Q
    |||||||||||||||||||||| ||||||||||||||    
T  31436818 tagagaaatgatatttgtacaaccactttctcacaac 31436854  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 196
Target Start/End: Original strand, 1615035 - 1615070
Alignment:
Q  161 agagaaatgatatttgtacaatcactttctcacaac 196  Q
    ||||||||||||||||||||| ||||||||||||||    
T  1615035 agagaaatgatatttgtacaaccactttctcacaac 1615070  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 196
Target Start/End: Original strand, 28253015 - 28253049
Alignment:
Q  162 gagaaatgatatttgtacaatcactttctcacaac 196  Q
    |||||||||||||||||||| ||||||||||||||    
T  28253015 gagaaatgatatttgtacaaccactttctcacaac 28253049  T

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Target: scaffold0155 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 196
Target Start/End: Complemental strand, 3332 - 3297
Alignment:
Q  161 agagaaatgatatttgtacaatcactttctcacaac 196  Q
    ||||||||||||||||||||| ||||||||||||||    
T  3332 agagaaatgatatttgtacaaccactttctcacaac 3297  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 196
Target Start/End: Original strand, 51410805 - 51410840
Alignment:
Q  161 agagaaatgatatttgtacaatcactttctcacaac 196  Q
    ||||||||||||||||||||| ||||||||||||||    
T  51410805 agagaaatgatatttgtacaaccactttctcacaac 51410840  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 195
Target Start/End: Original strand, 7351444 - 7351478
Alignment:
Q  161 agagaaatgatatttgtacaatcactttctcacaa 195  Q
    |||||||||||||||||||||||| ||||||||||    
T  7351444 agagaaatgatatttgtacaatcattttctcacaa 7351478  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 196
Target Start/End: Original strand, 8066355 - 8066389
Alignment:
Q  162 gagaaatgatatttgtacaatcactttctcacaac 196  Q
    |||||||||||||||||||| ||||||||||||||    
T  8066355 gagaaatgatatttgtacaaccactttctcacaac 8066389  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 196
Target Start/End: Complemental strand, 37303145 - 37303111
Alignment:
Q  162 gagaaatgatatttgtacaatcactttctcacaac 196  Q
    |||||||||||||||||||| ||||||||||||||    
T  37303145 gagaaatgatatttgtacaaccactttctcacaac 37303111  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 39540233 - 39540269
Alignment:
Q  160 tagagaaatgatatttgtacaatcactttctcacaac 196  Q
    |||| ||||||||||||||||| ||||||||||||||    
T  39540233 tagaaaaatgatatttgtacaaccactttctcacaac 39540269  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 67
Target Start/End: Original strand, 51279940 - 51279968
Alignment:
Q  39 aatgtatcaaaattttaaaatagtttatg 67  Q
    |||||||||||||||||||||||||||||    
T  51279940 aatgtatcaaaattttaaaatagtttatg 51279968  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 196
Target Start/End: Original strand, 8395342 - 8395376
Alignment:
Q  162 gagaaatgatatttgtacaatcactttctcacaac 196  Q
    |||||||||||||||||||| ||||||||||||||    
T  8395342 gagaaatgatatttgtacaaccactttctcacaac 8395376  T

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Target: scaffold0154 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 195
Target Start/End: Complemental strand, 9934 - 9886
Alignment:
Q  147 gattatatgatagtagagaaatgatatttgtacaatcactttctcacaa 195  Q
    |||||||| ||  ||||||||||||||||||||||||| ||| ||||||    
T  9934 gattatataattttagagaaatgatatttgtacaatcattttttcacaa 9886  T

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Target: scaffold0115 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 188
Target Start/End: Complemental strand, 15261 - 15233
Alignment:
Q  160 tagagaaatgatatttgtacaatcacttt 188  Q
    |||||||||||||||||||||||||||||    
T  15261 tagagaaatgatatttgtacaatcacttt 15233  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 188
Target Start/End: Original strand, 27340867 - 27340895
Alignment:
Q  160 tagagaaatgatatttgtacaatcacttt 188  Q
    |||||||||||||||||||||||||||||    
T  27340867 tagagaaatgatatttgtacaatcacttt 27340895  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 188
Target Start/End: Original strand, 29402180 - 29402208
Alignment:
Q  160 tagagaaatgatatttgtacaatcacttt 188  Q
    |||||||||||||||||||||||||||||    
T  29402180 tagagaaatgatatttgtacaatcacttt 29402208  T

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