View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7380_low_47 (Length: 240)

Name: NF7380_low_47
Description: NF7380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7380_low_47
NF7380_low_47
[»] chr3 (21 HSPs)
chr3 (18-240)||(35708145-35708367)
chr3 (72-150)||(44284134-44284212)
chr3 (41-150)||(22232742-22232851)
chr3 (69-144)||(41028924-41028999)
chr3 (49-159)||(27792779-27792889)
chr3 (69-171)||(52450125-52450227)
chr3 (69-134)||(20192679-20192744)
chr3 (43-148)||(28779274-28779379)
chr3 (70-143)||(38462204-38462277)
chr3 (72-144)||(44374720-44374792)
chr3 (69-117)||(49586989-49587037)
chr3 (55-117)||(2865718-2865779)
chr3 (69-143)||(33307653-33307727)
chr3 (72-149)||(28283653-28283730)
chr3 (43-128)||(40122800-40122884)
chr3 (85-154)||(41159021-41159090)
chr3 (87-128)||(44014218-44014259)
chr3 (73-142)||(51278234-51278303)
chr3 (69-133)||(1395604-1395668)
chr3 (76-144)||(20504134-20504202)
chr3 (45-81)||(49845565-49845601)
[»] scaffold0024 (1 HSPs)
scaffold0024 (49-150)||(27492-27593)
[»] scaffold0053 (1 HSPs)
scaffold0053 (44-134)||(20111-20201)
[»] chr4 (28 HSPs)
chr4 (48-154)||(30207623-30207728)
chr4 (72-148)||(4191657-4191734)
chr4 (69-170)||(19422314-19422415)
chr4 (69-148)||(30024618-30024697)
chr4 (48-154)||(24160547-24160653)
chr4 (69-143)||(54325110-54325184)
chr4 (97-150)||(485997-486050)
chr4 (89-142)||(2980564-2980617)
chr4 (69-134)||(21593085-21593149)
chr4 (69-113)||(54327522-54327566)
chr4 (41-116)||(927426-927501)
chr4 (49-116)||(24929443-24929510)
chr4 (97-144)||(49619180-49619227)
chr4 (52-141)||(8422895-8422982)
chr4 (105-171)||(9843775-9843841)
chr4 (43-141)||(18630605-18630703)
chr4 (48-150)||(24443954-24444056)
chr4 (48-114)||(55870393-55870459)
chr4 (69-142)||(5219573-5219646)
chr4 (69-146)||(22684589-22684666)
chr4 (69-142)||(36734817-36734890)
chr4 (69-150)||(44319866-44319946)
chr4 (74-139)||(47970245-47970310)
chr4 (49-146)||(49219059-49219156)
chr4 (41-134)||(53943539-53943631)
chr4 (74-142)||(19670873-19670941)
chr4 (43-143)||(46415839-46415939)
chr4 (19-150)||(46796934-46797066)
[»] chr7 (20 HSPs)
chr7 (69-150)||(31341110-31341191)
chr7 (86-149)||(5373142-5373205)
chr7 (48-143)||(9527142-9527237)
chr7 (72-142)||(7244626-7244696)
chr7 (54-140)||(33894549-33894634)
chr7 (41-134)||(27481339-27481432)
chr7 (69-147)||(35536026-35536104)
chr7 (71-132)||(12835012-12835073)
chr7 (69-142)||(45593792-45593865)
chr7 (48-116)||(1417214-1417282)
chr7 (43-134)||(28340891-28340982)
chr7 (49-148)||(30496622-30496721)
chr7 (48-126)||(5006561-5006639)
chr7 (97-143)||(22388005-22388051)
chr7 (69-151)||(27121659-27121741)
chr7 (72-117)||(28178918-28178963)
chr7 (50-134)||(46081965-46082050)
chr7 (74-154)||(5276136-5276216)
chr7 (74-142)||(19123173-19123241)
chr7 (43-147)||(27492714-27492818)
[»] chr6 (20 HSPs)
chr6 (43-134)||(4006646-4006737)
chr6 (43-117)||(2117352-2117426)
chr6 (43-150)||(3155092-3155199)
chr6 (41-117)||(1402945-1403021)
chr6 (69-151)||(1810376-1810455)
chr6 (48-144)||(2514624-2514720)
chr6 (49-141)||(10452413-10452505)
chr6 (39-134)||(20671908-20672003)
chr6 (43-150)||(22742282-22742389)
chr6 (48-143)||(29274281-29274376)
chr6 (43-150)||(32975894-32976001)
chr6 (69-143)||(3169318-3169392)
chr6 (72-142)||(4247711-4247780)
chr6 (48-117)||(2027458-2027527)
chr6 (43-144)||(2727903-2728004)
chr6 (85-150)||(4248874-4248939)
chr6 (97-150)||(7148583-7148636)
chr6 (69-150)||(33068634-33068715)
chr6 (43-116)||(33787792-33787865)
chr6 (70-134)||(33259748-33259812)
[»] chr1 (18 HSPs)
chr1 (43-134)||(33527194-33527285)
chr1 (74-154)||(4202207-4202287)
chr1 (43-139)||(17269177-17269273)
chr1 (70-150)||(23895252-23895332)
chr1 (69-143)||(52013820-52013895)
chr1 (69-115)||(15360845-15360891)
chr1 (69-143)||(30259560-30259634)
chr1 (41-150)||(42556676-42556786)
chr1 (69-150)||(4200145-4200226)
chr1 (48-117)||(5756738-5756807)
chr1 (48-117)||(6074423-6074492)
chr1 (50-147)||(15437882-15437979)
chr1 (109-150)||(26916136-26916177)
chr1 (48-170)||(29045964-29046087)
chr1 (49-102)||(30257647-30257700)
chr1 (69-134)||(45999361-45999426)
chr1 (69-149)||(870962-871042)
chr1 (99-139)||(15579410-15579450)
[»] chr5 (25 HSPs)
chr5 (48-142)||(39257439-39257532)
chr5 (69-150)||(20982208-20982289)
chr5 (69-154)||(29117003-29117088)
chr5 (46-116)||(10303751-10303819)
chr5 (44-143)||(36539669-36539768)
chr5 (43-117)||(14295455-14295529)
chr5 (49-143)||(32059642-32059735)
chr5 (41-142)||(19177403-19177504)
chr5 (97-150)||(26516214-26516267)
chr5 (69-150)||(35135735-35135816)
chr5 (19-154)||(36638658-36638799)
chr5 (77-129)||(10280657-10280709)
chr5 (69-141)||(28586839-28586911)
chr5 (41-113)||(34245677-34245749)
chr5 (90-150)||(38819669-38819729)
chr5 (43-134)||(9202795-9202886)
chr5 (69-144)||(37063147-37063222)
chr5 (43-117)||(42181139-42181213)
chr5 (72-133)||(7096203-7096264)
chr5 (41-150)||(32172569-32172678)
chr5 (43-87)||(13604896-13604940)
chr5 (48-140)||(18704088-18704179)
chr5 (43-87)||(21768244-21768288)
chr5 (76-144)||(31694440-31694508)
chr5 (85-149)||(35095872-35095936)
[»] chr2 (19 HSPs)
chr2 (69-159)||(37053501-37053591)
chr2 (41-134)||(10143104-10143197)
chr2 (69-177)||(14277966-14278075)
chr2 (43-148)||(17952748-17952853)
chr2 (72-134)||(11344360-11344422)
chr2 (69-143)||(34339046-34339120)
chr2 (69-142)||(18962111-18962184)
chr2 (56-117)||(31740019-31740080)
chr2 (18-149)||(32694130-32694265)
chr2 (70-134)||(34054975-34055039)
chr2 (53-144)||(28803563-28803654)
chr2 (69-171)||(29729820-29729922)
chr2 (44-134)||(35755550-35755640)
chr2 (41-102)||(5043605-5043666)
chr2 (44-117)||(7862533-7862606)
chr2 (41-102)||(11513862-11513923)
chr2 (97-150)||(33197340-33197393)
chr2 (69-170)||(33267589-33267690)
chr2 (69-117)||(30537600-30537648)
[»] scaffold0590 (1 HSPs)
scaffold0590 (69-141)||(1147-1219)
[»] scaffold0275 (1 HSPs)
scaffold0275 (69-141)||(2756-2828)
[»] chr8 (21 HSPs)
chr8 (69-140)||(10727123-10727194)
chr8 (41-142)||(35298522-35298624)
chr8 (69-142)||(13652139-13652212)
chr8 (69-142)||(13710782-13710855)
chr8 (69-150)||(34788500-34788581)
chr8 (76-144)||(14482124-14482192)
chr8 (76-144)||(40728498-40728566)
chr8 (44-115)||(12361143-12361214)
chr8 (43-141)||(34770817-34770915)
chr8 (48-150)||(35869753-35869855)
chr8 (48-134)||(42597333-42597419)
chr8 (69-142)||(3645889-3645962)
chr8 (69-142)||(7026655-7026728)
chr8 (75-140)||(8194017-8194082)
chr8 (85-142)||(8823482-8823539)
chr8 (87-128)||(16163369-16163410)
chr8 (97-133)||(1112786-1112822)
chr8 (76-144)||(20672694-20672762)
chr8 (69-117)||(25867035-25867083)
chr8 (76-148)||(35534941-35535013)
chr8 (48-92)||(43704430-43704474)
[»] scaffold0428 (1 HSPs)
scaffold0428 (70-150)||(3820-3900)


Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 35708367 - 35708145
Alignment:
Q  18 gttttcagcttatttccacaactatgataacttatgaaaacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaaatagc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35708367 gttttcagcttatttccacaactatgataacttatgaaaacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaaatagc 35708268  T
Q  118 atatgcataagcacttagatgataagcgcttatttaaactgtgtatcaaaacagaacctaaatattaagcatctctacaaacagtacctgttaataaggt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35708267 atatgcataagcacttagatgataagcgcttatttaaactgtgtatcaacacagaacctaaatattaagcatctctacaaacagtacctgttaataaggt 35708168  T
Q  218 catttggaagatcctccatatca 240  Q
    ||||||||||||||| |||||||    
T  35708167 catttggaagatcctgcatatca 35708145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 72 - 150
Target Start/End: Original strand, 44284134 - 44284212
Alignment:
Q  72 tatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataagcgcttat 150  Q
    |||||||||||| ||||||||||| || ||| |||||||||||||| ||| ||| || ||||| ||||||| |||||||    
T  44284134 tatgaaaacagtttgactttgttttattttttgttatagaaatagcttatacattagtacttatatgataatcgcttat 44284212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 150
Target Start/End: Complemental strand, 22232851 - 22232742
Alignment:
Q  41 atgataacttatgaaaacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgat 140  Q
    |||||| |||||||||| | |||| |  ||||||||||||||| ||||||| ||| ||| || |||||| ||||||| ||| ||| |||| ||| |||||    
T  22232851 atgatagcttatgaaaatagcttacgacttatatgaaaacagtttgactttattttatcatttgttatataaatagcttatacatgagcatttatatgat 22232752  T
Q  141 aagcgcttat 150  Q
    ||| ||||||    
T  22232751 aagagcttat 22232742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 144
Target Start/End: Original strand, 41028924 - 41028999
Alignment:
Q  69 ttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataagc 144  Q
    |||| |||||||||  ||||||| |||  ||||| |||||||||||||| ||| |||||||||||| |||||||||    
T  41028924 ttatttgaaaacagattgactttattttttcttttgttatagaaatagcttatacataagcacttatatgataagc 41028999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 49 - 159
Target Start/End: Complemental strand, 27792889 - 27792779
Alignment:
Q  49 ttatgaaaacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataagcgctt 148  Q
    |||||||||||||||   | ||||||||||| ||| |||| || ||| |||||| ||| | |||||||| ||| |||||||||||| ||||||| | |||    
T  27792889 ttatgaaaacaacttgcagcttatatgaaaatagtttgaccttattttatcttttgtttttgaaatagcttatacataagcacttatatgataaactctt 27792790  T
Q  149 atttaaactgt 159  Q
    | |||| ||||    
T  27792789 agttaagctgt 27792779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 69 - 171
Target Start/End: Original strand, 52450125 - 52450227
Alignment:
Q  69 ttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataagcgcttatttaaactgtgtatcaaaa 168  Q
    |||| ||||||| || ||||||| |||||||||| ||||||||||| || |||||||||| ||||  ||||||| | |||  |||| |||| |||| |||    
T  52450125 ttatttgaaaactgtttgactttatttcatcttttgttatagaaattgcttatgcataagtacttgtatgataaacacttgattaagctgtttatccaaa 52450224  T
Q  169 cag 171  Q
    |||    
T  52450225 cag 52450227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 134
Target Start/End: Original strand, 20192679 - 20192744
Alignment:
Q  69 ttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcactta 134  Q
    |||||||||||| || ||||||| ||| |||||| |||||| ||||||| ||| ||||||||||||    
T  20192679 ttatatgaaaactgtttgactttattttatcttttgttatataaatagcttatacataagcactta 20192744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 148
Target Start/End: Complemental strand, 28779379 - 28779274
Alignment:
Q  43 gataacttatgaaaacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataa 142  Q
    |||||||||  |||||||||||  | ||||||||||| ||| ||||||| ||||||||   |||||| ||| ||| ||| || ||||| ||| |||||||    
T  28779379 gataacttacaaaaacaacttatagcttatatgaaaatagtttgactttatttcatctgatgttataaaaacagcttatacaaaagcaattatatgataa 28779280  T
Q  143 gcgctt 148  Q
    ||||||    
T  28779279 gcgctt 28779274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 143
Target Start/End: Complemental strand, 38462277 - 38462204
Alignment:
Q  70 tatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataag 143  Q
    |||||||||||||| ||||||| ||| |||||| | |||||||||||| |||  |||| |||||| ||||||||    
T  38462277 tatatgaaaacagtttgactttattttatcttttggtatagaaatagcttataaataaacacttatatgataag 38462204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 144
Target Start/End: Original strand, 44374720 - 44374792
Alignment:
Q  72 tatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataagc 144  Q
    |||||||||| | ||||||| ||| |||||| |||| ||| ||||| ||| |||||||||||| |||||||||    
T  44374720 tatgaaaacaatttgactttattttatcttttgttaaagatatagcttatacataagcacttatatgataagc 44374792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 117
Target Start/End: Original strand, 49586989 - 49587037
Alignment:
Q  69 ttatatgaaaacagtatgactttgtttcatctttagttatagaaatagc 117  Q
    ||||||||||||||| ||||||| ||| |||||| ||||||||||||||    
T  49586989 ttatatgaaaacagtttgactttattttatcttttgttatagaaatagc 49587037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 117
Target Start/End: Original strand, 2865718 - 2865779
Alignment:
Q  55 aaacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaaatagc 117  Q
    ||||||||||  ||||||||||||||| | ||||||||||| | |||| ||||||||||||||    
T  2865718 aaacaacttataggttatatgaaaacaatttgactttgttttaacttt-gttatagaaatagc 2865779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 143
Target Start/End: Original strand, 33307653 - 33307727
Alignment:
Q  69 ttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataag 143  Q
    ||||||||||| | | ||||||| |||||| ||| ||||  |||||||| ||| |||||||||||| ||||||||    
T  33307653 ttatatgaaaataatttgactttatttcatattttgttactgaaatagcttatacataagcacttatatgataag 33307727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 149
Target Start/End: Original strand, 28283653 - 28283730
Alignment:
Q  72 tatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataagcgctta 149  Q
    |||||||| ||| ||||||   || |||||| ||||||||| || | |||||||||||||||| ||||||| ||||||    
T  28283653 tatgaaaatagtttgacttacatttatcttttgttatagaagtaacttatgcataagcacttatatgataaacgctta 28283730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 128
Target Start/End: Original strand, 40122800 - 40122884
Alignment:
Q  43 gataacttatgaaaacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataag 128  Q
    |||| ||||| |||||||||||  | || |||||||||||| ||||||| ||| |||||| ||||| |||||||| ||| ||||||    
T  40122800 gatagcttataaaaacaacttatagctt-tatgaaaacagtttgactttattttatcttttgttattgaaatagcttatacataag 40122884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 154
Target Start/End: Complemental strand, 41159090 - 41159021
Alignment:
Q  85 tgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataagcgcttatttaa 154  Q
    ||||||| ||| |||||||||||||| |||| | ||| |||||||||||| | |||||||| ||| ||||    
T  41159090 tgactttattttatctttagttataggaataacttatacataagcacttatacgataagcgtttaattaa 41159021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 128
Target Start/End: Complemental strand, 44014259 - 44014218
Alignment:
Q  87 actttgtttcatctttagttatagaaatagcatatgcataag 128  Q
    ||||||||| ||||||||||||||||||||| ||| ||||||    
T  44014259 actttgttttatctttagttatagaaatagcttatacataag 44014218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 142
Target Start/End: Original strand, 51278234 - 51278303
Alignment:
Q  73 atgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataa 142  Q
    ||||||||||| ||||||| ||| || ||| |||||||||||||| ||| ||| |||| ||| |||||||    
T  51278234 atgaaaacagtttgactttatttaatattttgttatagaaatagcttatacattagcaattatatgataa 51278303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 133
Target Start/End: Complemental strand, 1395668 - 1395604
Alignment:
Q  69 ttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcactt 133  Q
    ||||||||||| | | ||||||| ||| |||||| |||||||||||||| ||| |||| ||||||    
T  1395668 ttatatgaaaataatttgactttattttatcttttgttatagaaatagcttatacatatgcactt 1395604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 144
Target Start/End: Complemental strand, 20504202 - 20504134
Alignment:
Q  76 aaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataagc 144  Q
    |||||||| ||||||  ||| ||| || ||||||||| |||| || ||||||||||||| |||||||||    
T  20504202 aaaacagtttgacttatttttatcatttgttatagaagtagcttaggcataagcacttaaatgataagc 20504134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 49845565 - 49845601
Alignment:
Q  45 taacttatgaaaacaacttaagggttatatgaaaaca 81  Q
    |||||||||||||||||||| || |||||||||||||    
T  49845565 taacttatgaaaacaacttatggtttatatgaaaaca 49845601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 49 - 150
Target Start/End: Complemental strand, 27593 - 27492
Alignment:
Q  49 ttatgaaaacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataagcgctt 148  Q
    ||||||||||||||||  | ||||||||||||| | ||||||| ||| |||||  |||||||||||| | ||| |||||||||||| |||||||| ||||    
T  27593 ttatgaaaacaacttatagtttatatgaaaacaatttgactttattttatcttctgttatagaaataacttatacataagcacttacatgataagagctt 27494  T
Q  149 at 150  Q
    ||    
T  27493 at 27492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 44 - 134
Target Start/End: Complemental strand, 20201 - 20111
Alignment:
Q  44 ataacttatgaaaacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcactta 134  Q
    ||||||||||||||||||| |  | |||||||| ||| || ||||||| ||| |||||| ||||||||||||| |||| ||||||||||||    
T  20201 ataacttatgaaaacaactaatagcttatatgataactgtttgactttattttatctttggttatagaaatagtatatacataagcactta 20111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 154
Target Start/End: Original strand, 30207623 - 30207728
Alignment:
Q  48 cttatgaaaacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataagcgct 147  Q
    |||||||||||||||||  | ||||||||||||||| ||| ||| ||| || ||| ||||||||| || ||||| |||||||||||| |||||||| |||    
T  30207623 cttatgaaaacaacttatagcttatatgaaaacagtttga-tttattttattttttgttatagaactaacatatacataagcacttatatgataagtgct 30207721  T
Q  148 tatttaa 154  Q
    || ||||    
T  30207722 taattaa 30207728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 148
Target Start/End: Complemental strand, 4191734 - 4191657
Alignment:
Q  72 tatgaaaacagtatgactttgtttc-atctttagttatagaaatagcatatgcataagcacttagatgataagcgctt 148  Q
    |||||||||||| ||||||| |||  |||||| |||||||||||||| ||| |||||||||||| ||||||| |||||    
T  4191734 tatgaaaacagtttgactttatttttatcttttgttatagaaatagcttatacataagcacttatatgataaacgctt 4191657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 170
Target Start/End: Complemental strand, 19422415 - 19422314
Alignment:
Q  69 ttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataagcgcttatttaaactgtgtatcaaaa 168  Q
    |||||||||||  || ||||||| ||  |||||| |||||||||||| | ||| |||||||| ||| |||||||||||||| |||| |||| |||| |||    
T  19422415 ttatatgaaaaatgtttgactttattatatcttttgttatagaaataacttatacataagcatttatatgataagcgcttaattaagctgtttatccaaa 19422316  T
Q  169 ca 170  Q
    ||    
T  19422315 ca 19422314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 148
Target Start/End: Complemental strand, 30024697 - 30024618
Alignment:
Q  69 ttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataagcgctt 148  Q
    ||||||||||||| | | ||||| ||| |||||| |||||||||||| | |||||||||| ||||| ||||||| |||||    
T  30024697 ttatatgaaaacaattttactttattttatcttttgttatagaaataacttatgcataagtacttatatgataaacgctt 30024618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 48 - 154
Target Start/End: Original strand, 24160547 - 24160653
Alignment:
Q  48 cttatgaaaacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataagcgct 147  Q
    |||||||||||||||||  | ||| ||||||| ||| ||| ||| | | |||||| |||||||||| ||| |||  ||||||||||| |||||||||| |    
T  24160547 cttatgaaaacaacttatagcttacatgaaaatagtttgaatttatattatcttttgttatagaaaaagcttatttataagcacttatatgataagcgtt 24160646  T
Q  148 tatttaa 154  Q
    || ||||    
T  24160647 taattaa 24160653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 69 - 143
Target Start/End: Original strand, 54325110 - 54325184
Alignment:
Q  69 ttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataag 143  Q
    ||||||||||||||| ||||||| ||| |||||| || ||||||||||  ||| || ||||||||| ||||||||    
T  54325110 ttatatgaaaacagtttgactttattttatcttttgtaatagaaatagtttatacacaagcacttatatgataag 54325184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 486050 - 485997
Alignment:
Q  97 atctttagttatagaaatagcatatgcataagcacttagatgataagcgcttat 150  Q
    |||||| ||| |||||||||||||| |||||||||||  |||||||||||||||    
T  486050 atcttttgttttagaaatagcatatacataagcacttttatgataagcgcttat 485997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 142
Target Start/End: Original strand, 2980564 - 2980617
Alignment:
Q  89 tttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataa 142  Q
    |||||||||| ||| |||||||||||||| ||| |||||||||||| |||||||    
T  2980564 tttgtttcattttttgttatagaaatagcttatacataagcacttatatgataa 2980617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 134
Target Start/End: Original strand, 21593085 - 21593149
Alignment:
Q  69 ttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcactta 134  Q
    ||||||||||| ||| ||||||| ||| ||||||||||||||||||||  ||| ||||||||||||    
T  21593085 ttatatgaaaatagt-tgactttattttatctttagttatagaaatagtttatacataagcactta 21593149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 113
Target Start/End: Original strand, 54327522 - 54327566
Alignment:
Q  69 ttatatgaaaacagtatgactttgtttcatctttagttatagaaa 113  Q
    ||||||||||||||| ||||||||||| |||||| ||||||||||    
T  54327522 ttatatgaaaacagtttgactttgttttatcttttgttatagaaa 54327566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 116
Target Start/End: Complemental strand, 927501 - 927426
Alignment:
Q  41 atgataacttatgaaaacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaaatag 116  Q
    |||||| |||||| |||||| |||  | ||||||||||||||| ||||||| |||||||||| ||  |||||||||    
T  927501 atgatagcttatgcaaacaagttatagcttatatgaaaacagtttgactttatttcatcttttgtattagaaatag 927426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 116
Target Start/End: Complemental strand, 24929510 - 24929443
Alignment:
Q  49 ttatgaaaacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaaatag 116  Q
    ||||||||||||||||  | || ||||||||||||  |||||| ||| |||||| |||||||||||||    
T  24929510 ttatgaaaacaacttatagcttttatgaaaacagttagactttattttatcttttgttatagaaatag 24929443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 144
Target Start/End: Original strand, 49619180 - 49619227
Alignment:
Q  97 atctttagttatagaaatagcatatgcataagcacttagatgataagc 144  Q
    |||||| |||||| ||||||| |||||||||||||||| |||||||||    
T  49619180 atcttttgttatacaaatagcctatgcataagcacttatatgataagc 49619227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 141
Target Start/End: Original strand, 8422895 - 8422982
Alignment:
Q  52 tgaaaacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgata 141  Q
    |||||||||||||  | |||||||||||||  |||||||| ||| ||||||  ||||| ||||||| ||| ||||||||| || ||||||    
T  8422895 tgaaaacaacttatagcttatatgaaaaca--atgactttattttatctttttttataaaaatagcttatacataagcacatatatgata 8422982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 171
Target Start/End: Original strand, 9843775 - 9843841
Alignment:
Q  105 ttatagaaatagcatatgcataagcacttagatgataagcgcttatttaaactgtgtatcaaaacag 171  Q
    ||||||||||||| ||| |||||||| ||| ||||||||| |||||||||  ||| |||| ||||||    
T  9843775 ttatagaaatagcttatacataagcagttatatgataagcacttatttaagttgtttatccaaacag 9843841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 141
Target Start/End: Complemental strand, 18630703 - 18630605
Alignment:
Q  43 gataacttatgaaaacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgata 141  Q
    |||| ||| |||||||||||||  | ||||||||||||    ||||||| ||| |||||| ||||| |||||||  ||||||||||| |||| ||||||    
T  18630703 gatagcttgtgaaaacaacttatagcttatatgaaaaccaattgactttattttatcttttgttattgaaatagtttatgcataagcgcttatatgata 18630605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 150
Target Start/End: Complemental strand, 24444056 - 24443954
Alignment:
Q  48 cttatgaaaacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataagcgct 147  Q
    |||||||||||||||||  | |||||||||||  || ||| ||| ||| || ||| ||| ||||||| || ||| |||||| ||||| |||||||| |||    
T  24444056 cttatgaaaacaacttatagcttatatgaaaattgtttgaatttattttatattttgttgtagaaatcgcttatacataagaacttatatgataagtgct 24443957  T
Q  148 tat 150  Q
    |||    
T  24443956 tat 24443954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 114
Target Start/End: Original strand, 55870393 - 55870459
Alignment:
Q  48 cttatgaaaacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaaat 114  Q
    |||||||||||||||||  | |||| |||||||||| ||||||| ||| |||||| |||||| ||||    
T  55870393 cttatgaaaacaacttatagcttatgtgaaaacagtttgactttatttgatcttttgttataaaaat 55870459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 142
Target Start/End: Original strand, 5219573 - 5219646
Alignment:
Q  69 ttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataa 142  Q
    ||||||||||| ||| | ||||| ||| ||||||  ||||||| ||||||||| ||| |||||||| |||||||    
T  5219573 ttatatgaaaatagtttaactttattttatcttttattatagagatagcatatacatgagcacttatatgataa 5219646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 22684589 - 22684666
Alignment:
Q  69 ttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataagcgc 146  Q
    ||||||||||||| | ||||||| ||| | | || |||||||||||||| ||| || ||||| ||| |||||||||||    
T  22684589 ttatatgaaaacaatttgactttattttaccgtttgttatagaaatagcttatacagaagcatttatatgataagcgc 22684666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 142
Target Start/End: Complemental strand, 36734890 - 36734817
Alignment:
Q  69 ttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataa 142  Q
    ||||||||||| ||| ||||||| ||| | |||| |||||||||| ||  ||| |||||||||||| |||||||    
T  36734890 ttatatgaaaatagtttgactttattttaccttttgttatagaaagagattatacataagcacttatatgataa 36734817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 150
Target Start/End: Complemental strand, 44319946 - 44319866
Alignment:
Q  69 ttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataagcgcttat 150  Q
    |||||||||||||||  |||||| ||| ||||||  ||||||||||||  ||| ||| |||||||| |||||||| ||||||    
T  44319946 ttatatgaaaacagttcgactttattttatctttt-ttatagaaatagtttatacatgagcacttatatgataagtgcttat 44319866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 139
Target Start/End: Complemental strand, 47970310 - 47970245
Alignment:
Q  74 tgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatga 139  Q
    |||||| ||| ||||||  ||| |||||| |||||||||||||| ||| |||||||||||| ||||    
T  47970310 tgaaaatagtttgacttcattttatcttttgttatagaaatagcttatacataagcacttatatga 47970245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 146
Target Start/End: Complemental strand, 49219156 - 49219059
Alignment:
Q  49 ttatgaaaacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataagcgc 146  Q
    ||||||||||||||||  | ||||||||||| | | ||||||| ||| || ||| |||||||||||| | ||| | ||| |||| | |||||||||||    
T  49219156 ttatgaaaacaacttatagcttatatgaaaataatttgactttattttatattttgttatagaaataacttatacctaaccactcatatgataagcgc 49219059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 134
Target Start/End: Complemental strand, 53943631 - 53943539
Alignment:
Q  41 atgataacttatgaaaacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcactta 134  Q
    |||| |||||||| ||||||||||  | ||||||||||||||| ||| ||| ||||||| || |||||| |||| || |||  |||||||||||    
T  53943631 atgacaacttatgtaaacaacttatagtttatatgaaaacagt-tgattttatttcatcctttgttataaaaatggcttataaataagcactta 53943539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 142
Target Start/End: Original strand, 19670873 - 19670941
Alignment:
Q  74 tgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataa 142  Q
    |||||||||| ||| ||| ||| |||||| | ||||||||||||| || ||||| |||||| |||||||    
T  19670873 tgaaaacagtttgaatttattttatcttttgatatagaaatagcacatacataatcacttaaatgataa 19670941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 143
Target Start/End: Original strand, 46415839 - 46415939
Alignment:
Q  43 gataacttatgaaaacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataa 142  Q
    |||| |||||||||| ||||||    || |||||||||||| |||   | ||| |||||| ||||| |||||||| ||| | ||||||||||||||||||    
T  46415839 gatagcttatgaaaagaacttataacttgtatgaaaacagtttgatcctattttatcttttgttattgaaatagcttatacgtaagcacttagatgataa 46415938  T
Q  143 g 143  Q
    |    
T  46415939 g 46415939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 150
Target Start/End: Complemental strand, 46797066 - 46796934
Alignment:
Q  19 ttttcagcttatttccacaac-tatgataacttatgaaaacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaaatagc 117  Q
    |||| |||||||||||| ||| || | || |||||||||||||||||    ||||||| |||||   ||| ||| ||| ||| || |||||  |||||||    
T  46797066 tttttagcttatttccaaaacataagctagcttatgaaaacaacttataacttatatggaaacatattgaatttattttatcgtttgttatgaaaatagc 46796967  T
Q  118 atatgcataagcacttagatgataagcgcttat 150  Q
     |||||||||| ||||| ||||||||| |||||    
T  46796966 ttatgcataagaacttatatgataagcacttat 46796934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 69 - 150
Target Start/End: Complemental strand, 31341191 - 31341110
Alignment:
Q  69 ttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataagcgcttat 150  Q
    |||||| ||| |||| ||||||| ||| |||||| |||||| ||||||| ||| |||||||| |||||||||||||||||||    
T  31341191 ttatataaaaccagtttgactttattttatcttttgttatacaaatagcttatacataagcatttagatgataagcgcttat 31341110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 86 - 149
Target Start/End: Complemental strand, 5373205 - 5373142
Alignment:
Q  86 gactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataagcgctta 149  Q
    |||||| ||| |||||| |||||||||||||||||| |||||||||||| ||||||||| ||||    
T  5373205 gactttattttatcttttgttatagaaatagcatatacataagcacttacatgataagcactta 5373142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 48 - 143
Target Start/End: Original strand, 9527142 - 9527237
Alignment:
Q  48 cttatgaaaacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataag 143  Q
    |||||||||||||||||  | ||||||||||||||| ||||||| ||  |||||| |||||||| ||||| |||  ||||||||||  ||||||||    
T  9527142 cttatgaaaacaacttatagtttatatgaaaacagtttgactttattatatcttttgttatagatatagcgtatatataagcacttgtatgataag 9527237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 72 - 142
Target Start/End: Complemental strand, 7244696 - 7244626
Alignment:
Q  72 tatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataa 142  Q
    |||||||||||| ||||||| ||| |||||| | |||||||||||| ||| |||||||||||| |||||||    
T  7244696 tatgaaaacagtttgactttcttttatcttttgatatagaaatagcttatacataagcacttatatgataa 7244626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 54 - 140
Target Start/End: Complemental strand, 33894634 - 33894549
Alignment:
Q  54 aaaacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgat 140  Q
    |||||||| ||| | ||||||||||||||| ||||||  ||| |||||| |||||||||||||| ||| |||||||||||| |||||    
T  33894634 aaaacaacataaagcttatatgaaaacagtttgacttatttt-atcttttgttatagaaatagcttatacataagcacttacatgat 33894549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 134
Target Start/End: Original strand, 27481339 - 27481432
Alignment:
Q  41 atgataacttatgaaaacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcactta 134  Q
    |||||| |||||||||| ||||||  | ||||||| ||||||| |||||| |||| ||| || |||||||||||||| ||| ||||| ||||||    
T  27481339 atgatagcttatgaaaataacttatagcttatatggaaacagtttgacttcgttttatcctttgttatagaaatagcttatacataaacactta 27481432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 69 - 147
Target Start/End: Complemental strand, 35536104 - 35536026
Alignment:
Q  69 ttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataagcgct 147  Q
    ||||||||||||| | ||||||| ||| |||||  |||||||||||||| ||| |||||||  ||| ||||||||||||    
T  35536104 ttatatgaaaacaatttgactttattttatcttatgttatagaaatagcttatacataagcctttatatgataagcgct 35536026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 132
Target Start/End: Original strand, 12835012 - 12835073
Alignment:
Q  71 atatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcact 132  Q
    ||||||||||| | ||||||| ||| |||||| ||| |||||||||||| ||||||||||||    
T  12835012 atatgaaaacaatttgactttattttatcttttgttgtagaaatagcatctgcataagcact 12835073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 142
Target Start/End: Original strand, 45593792 - 45593865
Alignment:
Q  69 ttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataa 142  Q
    ||||||||||||||| ||||||| ||| || ||| |||| ||||||||| ||| |||||||| ||| |||||||    
T  45593792 ttatatgaaaacagtttgactttattttatgttttgttacagaaatagcttatacataagcatttatatgataa 45593865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 116
Target Start/End: Complemental strand, 1417282 - 1417214
Alignment:
Q  48 cttatgaaaacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaaatag 116  Q
    |||||||||||||||||  | ||||||||||||| | ||||||| ||| |||||| |||||| ||||||    
T  1417282 cttatgaaaacaacttattgcttatatgaaaacaatttgactttattttatcttttgttatataaatag 1417214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 134
Target Start/End: Original strand, 28340891 - 28340982
Alignment:
Q  43 gataacttatgaaaacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcactta 134  Q
    |||| |||||||||||| ||||  | |||||||| |||| | ||||||  ||||||||||  ||||| |||||||||||  |||||||||||    
T  28340891 gatagcttatgaaaacagcttatagcttatatgacaacaatttgacttcatttcatcttttattataaaaatagcatatagataagcactta 28340982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 148
Target Start/End: Complemental strand, 30496721 - 30496622
Alignment:
Q  49 ttatgaaaacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataagcgctt 148  Q
    ||||||||||||| ||  ||||||| ||||||| | ||||||| ||| || ||| |||||||||||||  ||| ||||| ||||||  ||||| ||||||    
T  30496721 ttatgaaaacaacctataggttatacgaaaacaatttgactttattttatattttgttatagaaatagtttatacataaacacttatgtgatatgcgctt 30496622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 126
Target Start/End: Original strand, 5006561 - 5006639
Alignment:
Q  48 cttatgaaaacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcata 126  Q
    ||||||||||||| |||    ||||||||||||||| ||||||| ||| |||||| ||||||| |||||| ||| ||||    
T  5006561 cttatgaaaacaatttataccttatatgaaaacagtttgactttattttatcttttgttataggaatagcttatacata 5006639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 143
Target Start/End: Original strand, 22388005 - 22388051
Alignment:
Q  97 atctttagttatagaaatagcatatgcataagcacttagatgataag 143  Q
    |||||| |||||||||||||| ||| |||||||||||| ||||||||    
T  22388005 atcttttgttatagaaatagcttatccataagcacttaaatgataag 22388051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 151
Target Start/End: Original strand, 27121659 - 27121741
Alignment:
Q  69 ttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataagcgcttatt 151  Q
    ||||||||||||| | ||||||| ||| ||| ||  ||||||||||| | ||| |||||| | ||| ||||||||||||||||    
T  27121659 ttatatgaaaacaatttgactttattttatcatttattatagaaatatcttatacataaggaattatatgataagcgcttatt 27121741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 117
Target Start/End: Complemental strand, 28178963 - 28178918
Alignment:
Q  72 tatgaaaacagtatgactttgtttcatctttagttatagaaatagc 117  Q
    |||||||||| ||||||||| ||| |||||| ||||||||||||||    
T  28178963 tatgaaaacaatatgactttattttatcttttgttatagaaatagc 28178918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 134
Target Start/End: Complemental strand, 46082050 - 46081965
Alignment:
Q  50 tatgaaaacaacttaagggttatatgaaaacagtat-gactttgtttcatctttagttatagaaatagcatatgcataagcactta 134  Q
    |||||||||||||||    ||||||||||||||| | |||||||||| | |||| |||||||||||||| |||  |||| ||||||    
T  46082050 tatgaaaacaacttataacttatatgaaaacagttttgactttgttttaactttcgttatagaaatagcttatatataatcactta 46081965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 154
Target Start/End: Complemental strand, 5276216 - 5276136
Alignment:
Q  74 tgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataagcgcttatttaa 154  Q
    ||||||| || ||||||| | | |||||| |||||| ||||||| ||| |||||||||||| | ||||| |||||| ||||    
T  5276216 tgaaaacggtttgactttatgttatcttttgttataaaaatagcttatacataagcacttaaacgataaacgcttaattaa 5276136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 142
Target Start/End: Complemental strand, 19123241 - 19123173
Alignment:
Q  74 tgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataa 142  Q
    |||||||||| ||| ||| ||| |||||| | ||||||||||||| || ||||| |||||| |||||||    
T  19123241 tgaaaacagtttgaatttattttatcttttgatatagaaatagcacatacataatcacttaaatgataa 19123173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 147
Target Start/End: Complemental strand, 27492818 - 27492714
Alignment:
Q  43 gataacttatgaaaacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataa 142  Q
    |||| |||||||||||| ||||    ||||||||||| ||| ||| ||| ||| | |||| |||||||||||||  ||| |||||| ||||| ||||||     
T  27492818 gatagcttatgaaaacatcttattacttatatgaaaaaagtttgattttatttgaacttttgttatagaaatagtttatacataagaacttatatgatat 27492719  T
Q  143 gcgct 147  Q
    |||||    
T  27492718 gcgct 27492714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 43 - 134
Target Start/End: Complemental strand, 4006737 - 4006646
Alignment:
Q  43 gataacttatgaaaacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcactta 134  Q
    |||| |||||||||||||||||  | |||||| |||||| | ||||||| ||| ||| || |||||||||||| | ||||||||||||||||    
T  4006737 gatagcttatgaaaacaacttatagcttatataaaaacaatttgactttattttatcatttgttatagaaatatcttatgcataagcactta 4006646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 117
Target Start/End: Complemental strand, 2117426 - 2117352
Alignment:
Q  43 gataacttatgaaaacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaaatagc 117  Q
    ||||||||||||||||||||||  | ||||||||||| ||| ||||||||||| ||| || || |||||||||||    
T  2117426 gataacttatgaaaacaacttatagattatatgaaaatagtttgactttgttttatcctttgtcatagaaatagc 2117352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 150
Target Start/End: Complemental strand, 3155199 - 3155092
Alignment:
Q  43 gataacttatgaaaacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataa 142  Q
    |||| |||||||||| | ||||  ||||||||| ||||||| ||||||||||| |||||| || | ||| ||||| ||| ||||| || ||| |||||||    
T  3155199 gatatcttatgaaaatagcttataggttatatggaaacagtttgactttgttttatcttttgtaaaagagatagcttatacataaccatttatatgataa 3155100  T
Q  143 gcgcttat 150  Q
     |||||||    
T  3155099 acgcttat 3155092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 117
Target Start/End: Complemental strand, 1403021 - 1402945
Alignment:
Q  41 atgataacttatgaaaacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaaatagc 117  Q
    |||||| ||||||||||||| |||  | ||||||||||| ||| | ||||| ||| |||||| ||||||||||||||    
T  1403021 atgatagcttatgaaaacaatttatagcttatatgaaaatagtttaactttattttatcttttgttatagaaatagc 1402945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 151
Target Start/End: Original strand, 1810376 - 1810455
Alignment:
Q  69 ttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataagcgcttatt 151  Q
    ||||||||||||| |||   ||| ||| |||||| |||||||||||||| | |||||||||||||| |||||| | |||||||    
T  1810376 ttatatgaaaacaatat---tttattttatcttttgttatagaaatagcttttgcataagcacttatatgataggtgcttatt 1810455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 144
Target Start/End: Complemental strand, 2514720 - 2514624
Alignment:
Q  48 cttatgaaaacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataagc 144  Q
    |||||||||| ||||||  | | |||| |||  ||| ||||||| ||| ||||||  ||||||||||||| ||| |||||||||||| |||||||||    
T  2514720 cttatgaaaataacttatagctcatataaaattagtttgactttattttatcttttattatagaaatagcttatacataagcacttacatgataagc 2514624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 141
Target Start/End: Original strand, 10452413 - 10452505
Alignment:
Q  49 ttatgaaaacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgata 141  Q
    ||||| ||||||||||  | ||||||||||| ||| ||| ||| ||| || ||| |||||||||||||| ||| |||||||||| | ||||||    
T  10452413 ttatggaaacaacttatagcttatatgaaaatagtttgattttattttatattttgttatagaaatagcttatacataagcactgatatgata 10452505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 134
Target Start/End: Original strand, 20671908 - 20672003
Alignment:
Q  39 ctatgataacttatgaaaacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcactta 134  Q
    ||||||||  |||||||||||| |||| | ||||| ||||||| | ||||||| ||| |||||| | | |||||||||| ||| ||||| ||||||    
T  20671908 ctatgatagtttatgaaaacaatttaaagcttatacgaaaacaatttgactttattttatcttttgatctagaaatagcttatacataatcactta 20672003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 150
Target Start/End: Complemental strand, 22742389 - 22742282
Alignment:
Q  43 gataacttatgaaaacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataa 142  Q
    |||||||||| |||| | ||||  | ||||||||||||| | ||||||| ||| ||| || |||||| ||||||| |||  ||||| ||||| | |||||    
T  22742389 gataacttataaaaatagcttatagcttatatgaaaacaatttgactttattttatcctttgttatacaaatagcttatagataagaacttatacgataa 22742290  T
Q  143 gcgcttat 150  Q
    ||||||||    
T  22742289 gcgcttat 22742282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 143
Target Start/End: Original strand, 29274281 - 29274376
Alignment:
Q  48 cttatgaaaacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataag 143  Q
    ||||||||||||  |||  | ||||||||||||| | ||||||| ||| |||||| | |||||||||||| ||| |||||||| ||  ||||||||    
T  29274281 cttatgaaaacagtttatagcttatatgaaaacaatttgactttattttatcttttgctatagaaatagcttatacataagcatttctatgataag 29274376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 150
Target Start/End: Complemental strand, 32976001 - 32975894
Alignment:
Q  43 gataacttatgaaaacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataa 142  Q
    |||| |||||||||||||||||  | || |||  ||||||| ||||||| ||| || ||| |||| ||||||| | ||| ||||| |||||| |||| ||    
T  32976001 gatagcttatgaaaacaacttattgcttctattgaaacagtttgactttattttatattttgttacagaaataacttatacataaacacttatatgagaa 32975902  T
Q  143 gcgcttat 150  Q
    ||||||||    
T  32975901 gcgcttat 32975894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 143
Target Start/End: Original strand, 3169318 - 3169392
Alignment:
Q  69 ttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataag 143  Q
    |||| ||||||||||  || ||| |||||||||| |||||||||||||  ||  |||||||||||| ||||||||    
T  3169318 ttatgtgaaaacagttcgaatttatttcatcttttgttatagaaataggttacacataagcacttatatgataag 3169392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 142
Target Start/End: Original strand, 4247711 - 4247780
Alignment:
Q  72 tatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataa 142  Q
    ||||| |||||| ||| ||| ||| |||||| |||||||||||||| ||| |||||||||||| |||||||    
T  4247711 tatgacaacagtttgaattttttt-atcttttgttatagaaatagcttatacataagcacttacatgataa 4247780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 117
Target Start/End: Original strand, 2027458 - 2027527
Alignment:
Q  48 cttatgaaaacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaaatagc 117  Q
    ||||||| |||| ||||  ||||||||||||| ||| ||||||| ||| |||||| |||||| |||||||    
T  2027458 cttatgagaacagcttataggttatatgaaaatagtttgactttattttatcttttgttataaaaatagc 2027527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 144
Target Start/End: Original strand, 2727903 - 2728004
Alignment:
Q  43 gataacttatgaaaacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataa 142  Q
    |||| |||||||||||||||||  | |||||| || ||| | ||| |||  || |||||| |||||||||  ||| ||| |||||||||||| |||||||    
T  2727903 gatagcttatgaaaacaacttatagcttatatcaatacaatttgatttttgtttatcttttgttatagaagcagcttatacataagcacttatatgataa 2728002  T
Q  143 gc 144  Q
    ||    
T  2728003 gc 2728004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 150
Target Start/End: Complemental strand, 4248939 - 4248874
Alignment:
Q  85 tgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataagcgcttat 150  Q
    ||||||| ||| |||||| ||||| |||||||| |||  ||||||||||| |||| ||||||||||    
T  4248939 tgactttattttatcttttgttattgaaatagcttatatataagcacttatatgacaagcgcttat 4248874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 7148636 - 7148583
Alignment:
Q  97 atctttagttatagaaatagcatatgcataagcacttagatgataagcgcttat 150  Q
    |||||||||| |||||||||| ||| |||||||||||| || |||||| |||||    
T  7148636 atctttagttgtagaaatagcttatacataagcacttatataataagcccttat 7148583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 150
Target Start/End: Original strand, 33068634 - 33068715
Alignment:
Q  69 ttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataagcgcttat 150  Q
    |||| |||||||||| |||  || ||| |||||| |||||||||||| | ||| |||||||| |||  ||||||||||||||    
T  33068634 ttatttgaaaacagtttgatattattttatcttttgttatagaaataacttatacataagcatttatttgataagcgcttat 33068715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 116
Target Start/End: Original strand, 33787792 - 33787865
Alignment:
Q  43 gataacttatgaaaacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaaatag 116  Q
    ||||||||||||||||| ||||    |||||||||| || | ||||||||||| || ||| |||||||||||||    
T  33787792 gataacttatgaaaacagcttataacttatatgaaatcaatttgactttgttttatattttgttatagaaatag 33787865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 134
Target Start/End: Complemental strand, 33259812 - 33259748
Alignment:
Q  70 tatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcactta 134  Q
    |||| ||||||||||||||||   || |||||| |||||| ||||||| ||| ||||||||||||    
T  33259812 tataggaaaacagtatgacttcaatttatcttttgttataaaaatagcttatacataagcactta 33259748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 43 - 134
Target Start/End: Original strand, 33527194 - 33527285
Alignment:
Q  43 gataacttatgaaaacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcactta 134  Q
    ||||||||||||||||| ||||  | ||||||||||||||| ||||| | ||| |||||| ||| |||||||||| ||| ||||||| ||||    
T  33527194 gataacttatgaaaacagcttatagattatatgaaaacagtttgactgtattttatcttttgttttagaaatagcttattcataagcgctta 33527285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 4202207 - 4202287
Alignment:
Q  74 tgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataagcgcttatttaa 154  Q
    |||||||||  |||||||| || |||||| |||||||||||| | ||| | |||||||||| ||||||| |||||| ||||    
T  4202207 tgaaaacagcttgactttggtttatcttttgttatagaaataacttatacttaagcacttatatgataaacgcttaattaa 4202287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 139
Target Start/End: Complemental strand, 17269273 - 17269177
Alignment:
Q  43 gataacttatgaaaacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatga 139  Q
    |||| |||||||||||||||||  | ||||||||||||| | ||||||| |||   |||| ||| |||||||| | ||| |||||||||||| ||||    
T  17269273 gatagcttatgaaaacaacttattgcttatatgaaaacaatttgactttattttcacttttgttctagaaataacttatacataagcacttatatga 17269177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 150
Target Start/End: Complemental strand, 23895332 - 23895252
Alignment:
Q  70 tatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataagcgcttat 150  Q
    ||||||| |||||| ||| ||| ||| |||||| |||||||||||||| ||| |||||  ||||| |||||||| ||||||    
T  23895332 tatatgagaacagtttgaatttattttatcttttgttatagaaatagcttatacataataacttatatgataagggcttat 23895252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 143
Target Start/End: Complemental strand, 52013895 - 52013820
Alignment:
Q  69 ttatatgaaaacagtatgactttgtttcatctttagtt-atagaaatagcatatgcataagcacttagatgataag 143  Q
    |||||||||||||||||| |||||||  ||||||  || ||||||||||| ||| |||||||| ||| ||||||||    
T  52013895 ttatatgaaaacagtatgtctttgttatatcttttctttatagaaatagcttatacataagcatttacatgataag 52013820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 115
Target Start/End: Complemental strand, 15360891 - 15360845
Alignment:
Q  69 ttatatgaaaacagtatgactttgtttcatctttagttatagaaata 115  Q
    ||||||||||||||| ||||||| ||| |||||| ||||||||||||    
T  15360891 ttatatgaaaacagtttgactttattttatcttttgttatagaaata 15360845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 143
Target Start/End: Original strand, 30259560 - 30259634
Alignment:
Q  69 ttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataag 143  Q
    |||||| ||| |||| ||||||| ||| || ||| |||||||||||||| | |||||||||||||  ||||||||    
T  30259560 ttatatcaaagcagtttgactttattttatattttgttatagaaatagcttgtgcataagcacttctatgataag 30259634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 150
Target Start/End: Original strand, 42556676 - 42556786
Alignment:
Q  41 atgataacttatgaaaacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgca-taagcacttagatga 139  Q
    |||||| |||||||||||||||||  | |||||| |||  ||| ||| ||| |||||||||| || ||||||||| | ||| || || ||||||| |||     
T  42556676 atgatagcttatgaaaacaacttatagcttatataaaagtagtttgattttatttcatcttttgtcatagaaataacttatacattaggcacttaaatgt 42556775  T
Q  140 taagcgcttat 150  Q
    |||||||||||    
T  42556776 taagcgcttat 42556786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 150
Target Start/End: Complemental strand, 4200226 - 4200145
Alignment:
Q  69 ttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataagcgcttat 150  Q
    |||||||||||||   ||||||| ||| |||||| |||||| ||||| | |||  |||| ||||||||||||||| ||||||    
T  4200226 ttatatgaaaacaacttgactttattttatcttttgttataaaaataacttatatataaacacttagatgataagtgcttat 4200145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 117
Target Start/End: Original strand, 5756738 - 5756807
Alignment:
Q  48 cttatgaaaacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaaatagc 117  Q
    |||| ||||||||||||    ||||||||||||||| | ||||| | |||||||| ||||||||||||||    
T  5756738 cttacgaaaacaacttataatttatatgaaaacagtttaactttatatcatcttttgttatagaaatagc 5756807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 117
Target Start/End: Complemental strand, 6074492 - 6074423
Alignment:
Q  48 cttatgaaaacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaaatagc 117  Q
    |||| |||||||||| |  | ||||||||||||||| | ||||| | |||||||| ||||||||||||||    
T  6074492 cttaagaaaacaactcatagcttatatgaaaacagtttaactttatatcatcttttgttatagaaatagc 6074423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 147
Target Start/End: Complemental strand, 15437979 - 15437882
Alignment:
Q  50 tatgaaaacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataagcgct 147  Q
    ||||||||||||||  || | || |||||||||| ||||||  ||| || ||| |||||||||||||| | | ||||| ||| |||||||||| ||||    
T  15437979 tatgaaaacaacttctggctgatttgaaaacagtttgacttaattttattttttgttatagaaatagcttttacataaacacatagatgataatcgct 15437882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 150
Target Start/End: Complemental strand, 26916177 - 26916136
Alignment:
Q  109 agaaatagcatatgcataagcacttagatgataagcgcttat 150  Q
    ||||||||| |||| |||||||||||||||||||| ||||||    
T  26916177 agaaatagcttatggataagcacttagatgataagagcttat 26916136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 170
Target Start/End: Original strand, 29045964 - 29046087
Alignment:
Q  48 cttatgaaaacaacttaagggttatatgaaaacagtatgact--ttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataagcg 145  Q
    |||||||||||||||||  | |||||||| |||| | || ||  |||||| |||||| |||||||||||| | ||| || ||||||||| | |||||| |    
T  29045964 cttatgaaaacaacttatagcttatatgagaacaatttggctatttgttt-atcttttgttatagaaatatcttatacacaagcacttatacgataagtg 29046062  T
Q  146 cttatttaaactgtgtatcaaaaca 170  Q
    |||| |||| |||| |||| |||||    
T  29046063 cttaattaatctgtttatccaaaca 29046087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 30257700 - 30257647
Alignment:
Q  49 ttatgaaaacaacttaagggttatatgaaaacagtatgactttgtttcatcttt 102  Q
    ||||||||||||||||| | ||||||| ||||||| ||||||| ||| ||||||    
T  30257700 ttatgaaaacaacttaaagcttatatggaaacagtttgactttattttatcttt 30257647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 134
Target Start/End: Original strand, 45999361 - 45999426
Alignment:
Q  69 ttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcactta 134  Q
    |||||||||| |||| ||||||| | | |||||| |||||||||||||| ||| ||| ||||||||    
T  45999361 ttatatgaaagcagtttgactttatcttatcttttgttatagaaatagcttatacatgagcactta 45999426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 149
Target Start/End: Complemental strand, 871042 - 870962
Alignment:
Q  69 ttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataagcgctta 149  Q
    ||||||||||| |   ||||||  ||| |||||| |||||| ||||||  ||| |||||||||||| ||||||||||||||    
T  871042 ttatatgaaaaaaaattgacttaattttatcttttgttataaaaatagtttatacataagcacttatatgataagcgctta 870962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 139
Target Start/End: Complemental strand, 15579450 - 15579410
Alignment:
Q  99 ctttagttatagaaatagcatatgcataagcacttagatga 139  Q
    ||||||||||||||||||| ||| |||||||||||| ||||    
T  15579450 ctttagttatagaaatagcttatacataagcacttacatga 15579410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 48 - 142
Target Start/End: Original strand, 39257439 - 39257532
Alignment:
Q  48 cttatgaaaacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataa 142  Q
    |||||||||||||||||  | |||||||||||  || ||||||| ||| | |||| |||||||| ||||||||| |||||||||||| |||||||    
T  39257439 cttatgaaaacaacttatagtttatatgaaaag-gtttgactttattttaccttttgttatagagatagcatatacataagcacttacatgataa 39257532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 150
Target Start/End: Original strand, 20982208 - 20982289
Alignment:
Q  69 ttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataagcgcttat 150  Q
    |||||||||||| |  ||||||| ||| ||| || |||||||||||||| ||| |||||||||||| ||||||||| |||||    
T  20982208 ttatatgaaaacgggttgactttattttatcctttgttatagaaatagcttatacataagcacttatatgataagcacttat 20982289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 154
Target Start/End: Original strand, 29117003 - 29117088
Alignment:
Q  69 ttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataagcgcttatttaa 154  Q
    ||||| ||||||||| ||||||| ||| |||||| |||||||||||| ||||| ||||| ||  || |||||||||||||| ||||    
T  29117003 ttatacgaaaacagtttgactttattttatcttttgttatagaaataacatatacataatcagctatatgataagcgcttaattaa 29117088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 116
Target Start/End: Complemental strand, 10303819 - 10303751
Alignment:
Q  46 aacttatgaaaacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaaatag 116  Q
    |||||||||||||||||||  ||||| ||||||||| | ||||||| ||| |||||| |||||||||||||    
T  10303819 aacttatgaaaacaactta--ggttaaatgaaaacaatttgactttattttatcttttgttatagaaatag 10303751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 143
Target Start/End: Complemental strand, 36539768 - 36539669
Alignment:
Q  44 ataacttatgaaaacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataag 143  Q
    ||||||||| |||||||||||  | ||||||||||||||  ||||||| ||| |||||| | || | ||||||| ||  |||||||||||| ||||||||    
T  36539768 ataacttataaaaacaacttatagcttatatgaaaacaggttgactttattttatcttttgataaacaaatagcttacacataagcacttatatgataag 36539669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 117
Target Start/End: Complemental strand, 14295529 - 14295455
Alignment:
Q  43 gataacttatgaaaacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaaatagc 117  Q
    |||| |||| ||||||| ||||  | ||||||||||||||| ||||||| ||| |||||| ||||||||||||||    
T  14295529 gatagcttacgaaaacagcttatagcttatatgaaaacagtttgactttattttatcttttgttatagaaatagc 14295455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 49 - 143
Target Start/End: Original strand, 32059642 - 32059735
Alignment:
Q  49 ttatgaaaacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataag 143  Q
    ||||||||||| ||||  | ||||||||||||||| ||||||| ||| ||| ||||||| | ||| ||| ||| |||||||||||| ||||||||    
T  32059642 ttatgaaaacagcttatagcttatatgaaaacagtttgactttattttatc-ttagttacaaaaacagcttatacataagcacttatatgataag 32059735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 142
Target Start/End: Complemental strand, 19177504 - 19177403
Alignment:
Q  41 atgataacttatgaaaacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgat 140  Q
    |||| |||||| ||||||||||||  | |||||||||||||||  |||||  ||| |||||  ||| |||||||||  ||| |||||||||||| |||||    
T  19177504 atgagaacttacgaaaacaacttatagcttatatgaaaacagttagacttaattttatcttctgttgtagaaatagtttatacataagcacttatatgat 19177405  T
Q  141 aa 142  Q
    ||    
T  19177404 aa 19177403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 26516267 - 26516214
Alignment:
Q  97 atctttagttatagaaatagcatatgcataagcacttagatgataagcgcttat 150  Q
    |||||| ||| |||||||||| ||| |||||||||||| |||||||||||||||    
T  26516267 atcttttgttttagaaatagcttatacataagcacttatatgataagcgcttat 26516214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 150
Target Start/End: Original strand, 35135735 - 35135816
Alignment:
Q  69 ttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataagcgcttat 150  Q
    ||||||||||| ||| ||||||| ||| |||||| |||||||||||| | ||| ||||| |||||| ||| ||||| |||||    
T  35135735 ttatatgaaaatagtttgactttattttatcttttgttatagaaatatcttatacataaacacttatatgttaagcacttat 35135816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 154
Target Start/End: Complemental strand, 36638799 - 36638658
Alignment:
Q  19 ttttcagcttatttccacaa-----ctatgataacttatgaaaacaacttaagggttatatg-aaaacagtatgactttgtttcatctttagttatagaa 112  Q
    ||||||||||||||||| ||     ||| ||||||||||||||||| ||| ||| ||||||| |||||||   || ||||||| |||||| |||||||||    
T  36638799 ttttcagcttatttccataagctctctaggataacttatgaaaacagctttaggcttatatgaaaaacaggtcgaatttgttttatcttttgttatagaa 36638700  T
Q  113 atagcatatgcataagcacttagatgataagcgcttatttaa 154  Q
    ||||  ||| ||| | ||| || |||||||| ||||| ||||    
T  36638699 atagtttatacattaacacctatatgataagtgcttaattaa 36638658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 129
Target Start/End: Original strand, 10280657 - 10280709
Alignment:
Q  77 aaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagc 129  Q
    ||||||| ||||||| ||  |||||| ||||||||||||||||||||||||||    
T  10280657 aaacagtttgactttattctatcttttgttatagaaatagcatatgcataagc 10280709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 141
Target Start/End: Original strand, 28586839 - 28586911
Alignment:
Q  69 ttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgata 141  Q
    ||||||||||||||| ||||||| ||| |||||| |||||||||||||  ||| ||||| ||| || ||||||    
T  28586839 ttatatgaaaacagtttgactttattttatcttttgttatagaaatagtgtatacataaccacatatatgata 28586911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 113
Target Start/End: Complemental strand, 34245749 - 34245677
Alignment:
Q  41 atgataacttatgaaaacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaaa 113  Q
    |||||| ||||| |||||||||||  | |||||| ||||||||  || ||||||| |||||||||||||||||    
T  34245749 atgatagcttataaaaacaacttatagcttatattaaaacagttggaatttgttttatctttagttatagaaa 34245677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 150
Target Start/End: Original strand, 38819669 - 38819729
Alignment:
Q  90 ttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataagcgcttat 150  Q
    |||||| |||||| |||||||||||||| ||| ||||||| |||| |||||||| ||||||    
T  38819669 ttgttttatcttttgttatagaaatagcgtatacataagcccttatatgataagtgcttat 38819729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 134
Target Start/End: Original strand, 9202795 - 9202886
Alignment:
Q  43 gataacttatgaaaacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcactta 134  Q
    ||||||||||||||||| ||||  | ||||||||||||| | | ||||| ||| |||||| | || ||||||||| |||  |||||||||||    
T  9202795 gataacttatgaaaacagcttattgcttatatgaaaacaatttaactttattttatcttttgctacagaaatagcttatatataagcactta 9202886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 144
Target Start/End: Original strand, 37063147 - 37063222
Alignment:
Q  69 ttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataagc 144  Q
    ||||||||||| ||| ||||||| ||| |||||| |||||||||||||  ||| |||||||| ||| |||| ||||    
T  37063147 ttatatgaaaatagtttgactttattttatcttttgttatagaaatagtttatacataagcatttatatgacaagc 37063222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 117
Target Start/End: Original strand, 42181139 - 42181213
Alignment:
Q  43 gataacttatgaaaacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaaatagc 117  Q
    |||||||| || ||||||||||  | ||||||||||||  | ||||||||||| |||||| |||||| |||||||    
T  42181139 gataacttgtgcaaacaacttatagcttatatgaaaaccatttgactttgttttatcttttgttataaaaatagc 42181213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 133
Target Start/End: Original strand, 7096203 - 7096264
Alignment:
Q  72 tatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcactt 133  Q
    ||||||||  || ||||||| ||| |||||| |||||||||||||| ||| |||||||||||    
T  7096203 tatgaaaatggtttgactttattttatcttttgttatagaaatagcttatacataagcactt 7096264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 150
Target Start/End: Complemental strand, 32172678 - 32172569
Alignment:
Q  41 atgataacttatgaaaacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgat 140  Q
    |||||| |||||||||||| ||||  | ||||||| |||||   ||||||  ||| |||||| ||| |||||||||  ||| ||||||| |||  |||||    
T  32172678 atgatagcttatgaaaacagcttatagcttatatgtaaacaacttgacttcattttatcttttgttgtagaaatagtttatacataagctcttgtatgat 32172579  T
Q  141 aagcgcttat 150  Q
    ||||||||||    
T  32172578 aagcgcttat 32172569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 87
Target Start/End: Original strand, 13604896 - 13604940
Alignment:
Q  43 gataacttatgaaaacaacttaagggttatatgaaaacagtatga 87  Q
    ||||||||||||||||| ||||| | ||||||||||||| |||||    
T  13604896 gataacttatgaaaacagcttaaagtttatatgaaaacattatga 13604940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 140
Target Start/End: Original strand, 18704088 - 18704179
Alignment:
Q  48 cttatgaaaacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgat 140  Q
    |||||||||||||||||  | |||||| |||| ||  ||||||| ||| |||||| |||||||||||| | ||| |||||| ||||| |||||    
T  18704088 cttatgaaaacaacttatagcttatataaaaatagcttgactttattt-atcttttgttatagaaataacttatacataagaacttatatgat 18704179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 87
Target Start/End: Original strand, 21768244 - 21768288
Alignment:
Q  43 gataacttatgaaaacaacttaagggttatatgaaaacagtatga 87  Q
    ||||||||||||||||| ||||| | ||||||||||||| |||||    
T  21768244 gataacttatgaaaacagcttaaagtttatatgaaaacattatga 21768288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 144
Target Start/End: Complemental strand, 31694508 - 31694440
Alignment:
Q  76 aaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataagc 144  Q
    |||||||| |||||||  || || ||| |||||||| ||||| ||| |||||||||||| |||||||||    
T  31694508 aaaacagtttgactttagtttatgttttgttatagacatagcttattcataagcacttatatgataagc 31694440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 149
Target Start/End: Original strand, 35095872 - 35095936
Alignment:
Q  85 tgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataagcgctta 149  Q
    ||||||| ||| |||||| |||||||||||||  ||   ||||||||||| ||||||||||||||    
T  35095872 tgactttattttatcttttgttatagaaatagtttaaatataagcacttatatgataagcgctta 35095936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 69 - 159
Target Start/End: Complemental strand, 37053591 - 37053501
Alignment:
Q  69 ttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataagcgcttatttaaactgt 159  Q
    ||||||||||||||| ||||||| ||| || ||  |||||||||||||  ||| |||||||||||| |||||||| ||||| | |||||||    
T  37053591 ttatatgaaaacagtttgactttattttattttctgttatagaaatagtctatacataagcacttatatgataagtgcttaataaaactgt 37053501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 134
Target Start/End: Complemental strand, 10143197 - 10143104
Alignment:
Q  41 atgataacttatgaaaacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcactta 134  Q
    |||||| |||||||||| ||||||  | |||||| |||||||| ||||||  ||| |||||| |||||||||||| | ||| ||||||||||||    
T  10143197 atgatagcttatgaaaaaaacttatagcttatataaaaacagtttgacttaattttatcttttgttatagaaataacttatacataagcactta 10143104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 177
Target Start/End: Original strand, 14277966 - 14278075
Alignment:
Q  69 ttatatgaaaacagtat-gactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataagcgcttatttaaactgtgtatcaaa 167  Q
    ||||||||||||||| | |||||| ||| || |||||||||||||||||  ||| |||||||||||| |   |||||||||| | || |||| |||| ||    
T  14277966 ttatatgaaaacagttttgactttatttaatgtttagttatagaaatagtttatacataagcacttataccgtaagcgcttaataaacctgtatatccaa 14278065  T
Q  168 acagaaccta 177  Q
    ||||||||||    
T  14278066 acagaaccta 14278075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 148
Target Start/End: Original strand, 17952748 - 17952853
Alignment:
Q  43 gataacttatgaaaacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataa 142  Q
    |||| |||||||||||| |||   | ||||||||||| ||| ||||||| ||| |||||| |||||||||||||| |||  |||||| |||| |||||||    
T  17952748 gatagcttatgaaaacatcttgtagcttatatgaaaatagtttgactttattttatcttttgttatagaaatagcttatatataagctcttatatgataa 17952847  T
Q  143 gcgctt 148  Q
    | ||||    
T  17952848 gtgctt 17952853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 72 - 134
Target Start/End: Original strand, 11344360 - 11344422
Alignment:
Q  72 tatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcactta 134  Q
    |||||||||| | ||||||| ||| |||||| |||||||||||| | ||||||||||||||||    
T  11344360 tatgaaaacaatttgactttcttttatcttttgttatagaaatatcttatgcataagcactta 11344422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 69 - 143
Target Start/End: Complemental strand, 34339120 - 34339046
Alignment:
Q  69 ttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataag 143  Q
    ||||| ||||||||| ||||||| ||| |||||||| |||||||| ||  ||| |||||||||||| ||||||||    
T  34339120 ttatacgaaaacagtctgactttattttatctttagctatagaaaaagtttatacataagcacttatatgataag 34339046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 142
Target Start/End: Original strand, 18962111 - 18962184
Alignment:
Q  69 ttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataa 142  Q
    ||||||||||||||| | ||||| ||| |||||| |||||| |||||||  || |||||||||||| |||||||    
T  18962111 ttatatgaaaacagtttaactttattttatcttttgttataaaaatagctaatacataagcacttacatgataa 18962184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 117
Target Start/End: Original strand, 31740019 - 31740080
Alignment:
Q  56 aacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaaatagc 117  Q
    |||||||||  | ||||||||||| ||| ||||||| ||| |||||||||||||||||||||    
T  31740019 aacaacttatagcttatatgaaaatagtttgactttattttatctttagttatagaaatagc 31740080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 32694265 - 32694130
Alignment:
Q  18 gttttcagcttatttccacaa-----ctatgataacttatgaaaacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaa 112  Q
    |||||||||||||||||||||     ||| |||| |||||| ||||||||||    |||||| |||| ||| ||| ||| ||| |||||| | |||||||    
T  32694265 gttttcagcttatttccacaatctatctaggatagcttatgcaaacaacttataaattatataaaaatagtctgattttattttatcttttgatatagaa 32694166  T
Q  113 atagcatatgcataagcacttagatgataagcgctta 149  Q
    ||||| ||| |||||  ||||| ||||||||||||||    
T  32694165 atagcttatacataa-tacttatatgataagcgctta 32694130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 134
Target Start/End: Original strand, 34054975 - 34055039
Alignment:
Q  70 tatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcactta 134  Q
    |||||| ||||||| || |||| ||| |||||| |||||||||||||| ||| ||||||||||||    
T  34054975 tatatgtaaacagtttgcctttattttatcttttgttatagaaatagcctatacataagcactta 34055039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 144
Target Start/End: Original strand, 28803563 - 28803654
Alignment:
Q  53 gaaaacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataagc 144  Q
    |||||||||||   | |||||||||| |||| ||||||| ||| |||||| ||||| |||||| | |||  ||||||||||| |||||||||    
T  28803563 gaaaacaacttgtagcttatatgaaatcagtttgactttattttatcttttgttatcgaaataacttatatataagcacttatatgataagc 28803654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 171
Target Start/End: Complemental strand, 29729922 - 29729820
Alignment:
Q  69 ttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataagcgcttatttaaactgtgtatcaaaa 168  Q
    |||| |||||||||| | |||||  || |||||| |||||| ||||||||||| | |||||||||| | ||||| | |||| ||||| ||| |||| |||    
T  29729922 ttatgtgaaaacagtttcactttaatttatcttttgttataaaaatagcatatacgtaagcacttatacgataatcacttaattaaaatgtttatctaaa 29729823  T
Q  169 cag 171  Q
    |||    
T  29729822 cag 29729820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 134
Target Start/End: Original strand, 35755550 - 35755640
Alignment:
Q  44 ataacttatgaaaacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcactta 134  Q
    |||||||||||||||||||||  | ||| ||||||||| | ||||||| |||  | |||  ||||||||||||| ||| ||||| ||||||    
T  35755550 ataacttatgaaaacaacttatagcttacatgaaaacaatttgactttattttctatttgattatagaaatagcttatacataaacactta 35755640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 102
Target Start/End: Original strand, 5043605 - 5043666
Alignment:
Q  41 atgataacttatgaaaacaacttaagggttatatgaaaacagtatgactttgtttcatcttt 102  Q
    |||||| ||||||||||||||||   | ||||||||||||||| ||||||| ||| ||||||    
T  5043605 atgatagcttatgaaaacaacttctagcttatatgaaaacagtttgactttattttatcttt 5043666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 117
Target Start/End: Complemental strand, 7862606 - 7862533
Alignment:
Q  44 ataacttatgaaaacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaaatagc 117  Q
    ||||||||||||| ||||||   | ||| | |||||||||||||| || |||||||||| ||||| ||||||||    
T  7862606 ataacttatgaaaccaacttgtagtttacacgaaaacagtatgaccttatttcatcttttgttatcgaaatagc 7862533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 102
Target Start/End: Complemental strand, 11513923 - 11513862
Alignment:
Q  41 atgataacttatgaaaacaacttaagggttatatgaaaacagtatgactttgtttcatcttt 102  Q
    |||||| |||||||||||||||||  | ||||||||||||| | ||||||| ||| ||||||    
T  11513923 atgatagcttatgaaaacaacttatagcttatatgaaaacaatttgactttattttatcttt 11513862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 150
Target Start/End: Original strand, 33197340 - 33197393
Alignment:
Q  97 atctttagttatagaaatagcatatgcataagcacttagatgataagcgcttat 150  Q
    |||||| |||||||||||||| |||  ||||||||||| |||||||||| ||||    
T  33197340 atcttttgttatagaaatagcttatagataagcacttatatgataagcgtttat 33197393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 170
Target Start/End: Original strand, 33267589 - 33267690
Alignment:
Q  69 ttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataagcgcttatttaaactgtgtatcaaaa 168  Q
    ||||||||||||||| | ||||| ||| |   || |||||||||||||  ||| |||||||||||| ||||||| | || ||||||||| | |||| |||    
T  33267589 ttatatgaaaacagtttaactttattttactgtttgttatagaaatagattatacataagcacttatatgataaccactaatttaaactatttatccaaa 33267688  T
Q  169 ca 170  Q
    ||    
T  33267689 ca 33267690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 117
Target Start/End: Original strand, 30537600 - 30537648
Alignment:
Q  69 ttatatgaaaacagtatgactttgtttcatctttagttatagaaatagc 117  Q
    |||||||||||| || ||||||| | | |||||||||||||||||||||    
T  30537600 ttatatgaaaactgtttgactttatatgatctttagttatagaaatagc 30537648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 69 - 141
Target Start/End: Original strand, 1147 - 1219
Alignment:
Q  69 ttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgata 141  Q
    |||||||| || ||| ||||||| ||| |||||| |||||||||||||| ||| |||||||||||| ||||||    
T  1147 ttatatgagaatagtttgactttattttatcttttgttatagaaatagcttatacataagcacttatatgata 1219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 69 - 141
Target Start/End: Complemental strand, 2828 - 2756
Alignment:
Q  69 ttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgata 141  Q
    |||||||| || ||| ||||||| ||| |||||| |||||||||||||| ||| |||||||||||| ||||||    
T  2828 ttatatgagaatagtttgactttattttatcttttgttatagaaatagcttatacataagcacttatatgata 2756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 140
Target Start/End: Complemental strand, 10727194 - 10727123
Alignment:
Q  69 ttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgat 140  Q
    |||| |||||||| | ||| ||| |||||||||| | |||||||||||| |||||||||||||||| |||||    
T  10727194 ttatgtgaaaacactttgaatttatttcatcttttgctatagaaatagcttatgcataagcacttatatgat 10727123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 41 - 142
Target Start/End: Original strand, 35298522 - 35298624
Alignment:
Q  41 atgataacttatgaaaacaacttaagggttatat-gaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatga 139  Q
    |||||| |||||||||||||||||  | |||||| |||||| || || |||| ||| |||||| ||||  |||||||| ||| |||||||||||| ||||    
T  35298522 atgatagcttatgaaaacaacttatagtttatattgaaaactgtttggctttattttatcttttgttactgaaatagcttatacataagcacttatatga 35298621  T
Q  140 taa 142  Q
    |||    
T  35298622 taa 35298624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 142
Target Start/End: Complemental strand, 13652212 - 13652139
Alignment:
Q  69 ttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataa 142  Q
    ||||||||||||| | | ||||  || ||||||| | |||||||||||| ||| ||||||||||||||||||||    
T  13652212 ttatatgaaaacaatttcacttcattccatcttttgctatagaaatagcttatacataagcacttagatgataa 13652139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 142
Target Start/End: Complemental strand, 13710855 - 13710782
Alignment:
Q  69 ttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataa 142  Q
    ||||||||||||| | | ||||  || ||||||| | |||||||||||| ||| ||||||||||||||||||||    
T  13710855 ttatatgaaaacaatttcacttcattccatcttttgctatagaaatagcttatacataagcacttagatgataa 13710782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 150
Target Start/End: Original strand, 34788500 - 34788581
Alignment:
Q  69 ttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataagcgcttat 150  Q
    ||||||| ||||||| ||||||| ||| |||||| || ||| ||||||| ||| | |||||| ||| |||||||||||||||    
T  34788500 ttatatggaaacagtttgactttattttatctttggtcataaaaatagcttatacgtaagcatttatatgataagcgcttat 34788581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 144
Target Start/End: Complemental strand, 14482192 - 14482124
Alignment:
Q  76 aaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataagc 144  Q
    |||||| | ||||||| ||| |||||| |||||||||||||  ||| |||||||||||| |||||||||    
T  14482192 aaaacaatttgactttattttatcttttgttatagaaatagtttatacataagcacttatatgataagc 14482124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 144
Target Start/End: Original strand, 40728498 - 40728566
Alignment:
Q  76 aaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataagc 144  Q
    |||||||| ||||||| ||| |||||| |||||||||||| | ||||||| | |||||| |||||||||    
T  40728498 aaaacagtttgactttattttatcttttgttatagaaataacttatgcatgaacacttatatgataagc 40728566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 115
Target Start/End: Complemental strand, 12361214 - 12361143
Alignment:
Q  44 ataacttatgaaaacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaaata 115  Q
    |||||||||||||||| ||||  | ||||||||||||| | ||||||  ||| ||||||| |||||||||||    
T  12361214 ataacttatgaaaacagcttatagcttatatgaaaacaatttgacttcattttatctttatttatagaaata 12361143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 141
Target Start/End: Complemental strand, 34770915 - 34770817
Alignment:
Q  43 gataacttatgaaaacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgata 141  Q
    |||| |||||||||||||||||  | ||| ||||||||| | ||||||| ||| |||||| || || |||||||  | | |||||||||||| ||||||    
T  34770915 gatagcttatgaaaacaacttatagcttaaatgaaaacaatttgactttattttatcttttgtaatggaaatagtttttacataagcacttacatgata 34770817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 150
Target Start/End: Complemental strand, 35869855 - 35869753
Alignment:
Q  48 cttatgaaaacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataagcgct 147  Q
    |||||||||||||||||  | |||||||||||  || ||| ||| ||| || ||| ||| ||||||| || ||| |||||| ||||| |||||||| |||    
T  35869855 cttatgaaaacaacttatagcttatatgaaaattgtttgaatttattttatattttgttgtagaaatcgcttatacataagaacttatatgataagtgct 35869756  T
Q  148 tat 150  Q
    |||    
T  35869755 tat 35869753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 134
Target Start/End: Complemental strand, 42597419 - 42597333
Alignment:
Q  48 cttatgaaaacaacttaagggttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcactta 134  Q
    |||||||||||||||||  | ||  ||||||||| | | ||||| ||| |||||| |||||||||||||| ||| |||||| |||||    
T  42597419 cttatgaaaacaacttatagcttgcatgaaaacaattttactttattttatcttttgttatagaaatagcttatacataagtactta 42597333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 142
Target Start/End: Original strand, 3645889 - 3645962
Alignment:
Q  69 ttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataa 142  Q
    ||||||||||| ||| ||| ||||||| || |||  ||||||||||||| ||| || ||||||||| |||||||    
T  3645889 ttatatgaaaatagtttgattttgttttatattttcttatagaaatagcttatacacaagcacttatatgataa 3645962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 142
Target Start/End: Complemental strand, 7026728 - 7026655
Alignment:
Q  69 ttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataa 142  Q
    ||||||||||||| | | ||||| ||| |||||| ||||||  | |||| |||||||||||||||| |||||||    
T  7026728 ttatatgaaaacaattttactttattttatcttttgttataacagtagcttatgcataagcacttatatgataa 7026655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 140
Target Start/End: Original strand, 8194017 - 8194082
Alignment:
Q  75 gaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgat 140  Q
    ||||||||  ||||||| ||| | ||||| ||||||||||||| ||| |||||||||||| |||||    
T  8194017 gaaaacagattgactttattttaactttacttatagaaatagcttatccataagcacttaaatgat 8194082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 8823482 - 8823539
Alignment:
Q  85 tgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataa 142  Q
    ||||||||||| |||||| ||||||||||| || |||  ||||||||||| |||||||    
T  8823482 tgactttgttttatcttttgttatagaaatggcttatatataagcacttaaatgataa 8823539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 128
Target Start/End: Original strand, 16163369 - 16163410
Alignment:
Q  87 actttgtttcatctttagttatagaaatagcatatgcataag 128  Q
    ||||||||| ||||||||||||||||||||| ||| ||||||    
T  16163369 actttgttttatctttagttatagaaatagcttatacataag 16163410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 133
Target Start/End: Complemental strand, 1112822 - 1112786
Alignment:
Q  97 atctttagttatagaaatagcatatgcataagcactt 133  Q
    |||||| |||||||||||||||||| |||||||||||    
T  1112822 atcttttgttatagaaatagcatatacataagcactt 1112786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 144
Target Start/End: Complemental strand, 20672762 - 20672694
Alignment:
Q  76 aaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataagc 144  Q
    |||||||| ||||||| ||| |||||| |||||| |||  |||||  |||||||||||| |||||||||    
T  20672762 aaaacagtttgactttattttatcttttgttatataaagggcatacacataagcacttatatgataagc 20672694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 117
Target Start/End: Complemental strand, 25867083 - 25867035
Alignment:
Q  69 ttatatgaaaacagtatgactttgtttcatctttagttatagaaatagc 117  Q
    ||||||||||| | | ||||||| |||||||||| ||||||||||||||    
T  25867083 ttatatgaaaatattttgactttatttcatcttttgttatagaaatagc 25867035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 148
Target Start/End: Original strand, 35534941 - 35535013
Alignment:
Q  76 aaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataagcgctt 148  Q
    |||||||| ||||||| ||| | ||||  ||||||||||||| |||  ||||||||||| ||||||| |||||    
T  35534941 aaaacagtttgactttattttaacttttattatagaaatagcttatatataagcacttatatgataaccgctt 35535013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 92
Target Start/End: Original strand, 43704430 - 43704474
Alignment:
Q  48 cttatgaaaacaacttaagggttatatgaaaacagtatgactttg 92  Q
    |||||||||||||||||  | ||||||||||||||| ||||||||    
T  43704430 cttatgaaaacaacttatagtttatatgaaaacagtttgactttg 43704474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 150
Target Start/End: Complemental strand, 3900 - 3820
Alignment:
Q  70 tatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcacttagatgataagcgcttat 150  Q
    |||| ||||||||||||||||   || |||||| |||||| ||||||| ||  |||||||||||| |||  ||||||||||    
T  3900 tataggaaaacagtatgacttcagtttatcttttgttataaaaatagcttacacataagcacttatatgtaaagcgcttat 3820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University