View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7380_low_48 (Length: 240)

Name: NF7380_low_48
Description: NF7380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7380_low_48
NF7380_low_48
[»] scaffold0286 (1 HSPs)
scaffold0286 (17-240)||(19078-19301)
[»] chr6 (2 HSPs)
chr6 (17-240)||(2163108-2163331)
chr6 (17-240)||(2174741-2174964)


Alignment Details
Target: scaffold0286 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 19301 - 19078
Alignment:
Q  17 agtttcttgcaaatttagcgattgttgtgtgagattctatggaggacaatcttaaccatagtcacaaaattcgctggacccctggaccgcaaattggttc 116  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  19301 agtttcttgcaaatttagcgattggtgtgtgagattctatggaggactatcttaaccatagtcacaaaattcgctggacccctgaaccgcaaattggttc 19202  T
Q  117 tcccgtacggccggttcggcagaattcatcaacaattggcatgaatcaaggaacccagcaaaccattgtttaatgaacaaaaacacagccttgatagcta 216  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  19201 tcccgtacggccggttcggcagaattcatcaacaattcgcatgaatcaaggaacccagcgaaccattgtttaatgaacaaaaacacagccttgatagcta 19102  T
Q  217 aaaagataataataaataaatatt 240  Q
    ||||||||||||||||||||||||    
T  19101 aaaagataataataaataaatatt 19078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 2163108 - 2163331
Alignment:
Q  17 agtttcttgcaaatttagcgattgttgtgtgagattctatggaggacaatcttaaccatagtcacaaaattcgctggacccctggaccgcaaattggttc 116  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  2163108 agtttcttgcaaatttagcgattggtgtgtgagattctatggaggactatcttaaccatagtcacaaaattcgctggacccctgaaccgcaaattggttc 2163207  T
Q  117 tcccgtacggccggttcggcagaattcatcaacaattggcatgaatcaaggaacccagcaaaccattgtttaatgaacaaaaacacagccttgatagcta 216  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2163208 tcccgtacggccggttcggcagaattcatcaacaattcgcatgaatcaaggaacccagcgaaccattgtttaatgaacaaaaacacagccttgatagcta 2163307  T
Q  217 aaaagataataataaataaatatt 240  Q
    ||||||||||||||||||||||||    
T  2163308 aaaagataataataaataaatatt 2163331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 2174741 - 2174964
Alignment:
Q  17 agtttcttgcaaatttagcgattgttgtgtgagattctatggaggacaatcttaaccatagtcacaaaattcgctggacccctggaccgcaaattggttc 116  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  2174741 agtttcttgcaaatttagcgattggtgtgtgagattctatggaggactatcttaaccatagtcacaaaattcgctggacccctgaaccgcaaattggttc 2174840  T
Q  117 tcccgtacggccggttcggcagaattcatcaacaattggcatgaatcaaggaacccagcaaaccattgtttaatgaacaaaaacacagccttgatagcta 216  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2174841 tcccgtacggccggttcggcagaattcatcaacaattcgcatgaatcaaggaacccagcgaaccattgtttaatgaacaaaaacacagccttgatagcta 2174940  T
Q  217 aaaagataataataaataaatatt 240  Q
    ||||||||||||||||||||||||    
T  2174941 aaaagataataataaataaatatt 2174964  T

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