View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7380_low_57 (Length: 228)
Name: NF7380_low_57
Description: NF7380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7380_low_57 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 7 - 228
Target Start/End: Complemental strand, 18190120 - 18189899
Alignment:
| Q |
7 |
cattttgctctaattttggatcgtgatattttttctaatcatcttgataaactctttgtagaaagagagggatgtgttttctttgtagaaaggagcatat |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18190120 |
cattttgctctaattttggatcgtgatattttttctaatcatcttgataaaatctttgtagaaagagagggatgtgttttctttgtagaaaggagcatat |
18190021 |
T |
|
| Q |
107 |
caagcctaaacaaagtgtttatgtgcctaaaatcaaggatcaagagataataaggcaatagtagaggaagagaaagtaaatggttcgtctccggaagata |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18190020 |
caagcctaaacaaagtgtttatgtgcctaaaatcaaggatcaagagataataaggcaatagtagaggaagagaaagtaaatggttcgtctccggaagata |
18189921 |
T |
|
| Q |
207 |
gaattctggttggaagcacaat |
228 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
18189920 |
gaattctggttggaagcacaat |
18189899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 37 - 218
Target Start/End: Complemental strand, 18195489 - 18195310
Alignment:
| Q |
37 |
ttttctaatcatcttgataaactctttgtagaaagagagggatgtgttttctttgtagaaaggagcatatcaagcctaaacaaagtgtttatgtgcctaa |
136 |
Q |
| |
|
|||||||||||||||||| || ||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| || |
|
|
| T |
18195489 |
ttttctaatcatcttgatcaaatctttatagaaagagagggatgtgtgttctttgtagaaaggagtctatcaagcctaaacaaagtgtttatgtgccaaa |
18195390 |
T |
|
| Q |
137 |
aatcaaggatcaagagataataaggcaatagtagaggaagagaaagtaaatggttcgtctccggaagatagaattctggttg |
218 |
Q |
| |
|
|| |||||||| || ||| ||||||||| ||||| ||||||||||||||| ||| || | | || ||||||||||||||| |
|
|
| T |
18195389 |
aaccaaggatc--gatatagaaaggcaatactagagcaagagaaagtaaatgattcttcccagtaaaatagaattctggttg |
18195310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University