View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7380_low_6 (Length: 509)
Name: NF7380_low_6
Description: NF7380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7380_low_6 |
 | |
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| [»] scaffold0144 (1 HSPs) |
| | |
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| [»] scaffold0511 (1 HSPs) |
| | |
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| [»] scaffold0256 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 337; Significance: 0; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 21 - 499
Target Start/End: Complemental strand, 16917119 - 16916644
Alignment:
| Q |
21 |
ttcaatcataagttctgtgaggttaggcatcttaactgcaatatttctcaggaggaaagatgcaccatgagcattaaactctttagtttttcctccaaca |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||| |||||||||||| ||||| |||||||||| |
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|
| T |
16917119 |
ttcaatcataagttctgtgaggttaggcatcttacctgcaatatctctcagga---aagatgcaccatgatcattaaactcttcagtttctcctccaaca |
16917023 |
T |
|
| Q |
121 |
taaacttcctcaacagagggaaggcttggaagttcaaatatagggatactctgaatgcttaacttagaaagttgtgatagcatctctactccttcgattc |
220 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
16917022 |
taaacttccttaacagagggaaggcttggaagttcaaatatagggatactctgaatgcttaacttagaaagttgtgagagcatctctactccttcgattc |
16916923 |
T |
|
| Q |
221 |
tcagcaccctctttaaattaggtaaatcatatagtgtcatttctcttaatgacggaaaagccttgtcttttgctttttcataaggtgaatcatcaatgta |
320 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| || || ||| ||||||||||||||||||||||||| |
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|
| T |
16916922 |
tcagcacactctttaaattaggtaaatcatatagtgtcatttccgttaatgacggaaaagcgttttcggttgaaatttcataaggtgaatcatcaatgta |
16916823 |
T |
|
| Q |
321 |
catcacatttgtcatttgagatagataaagagtggttaaacaatttaatttaccaagtggaggaagttgacgacagtttatgcacttcatgagtttaaca |
420 |
Q |
| |
|
| ||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
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|
| T |
16916822 |
cttcacatttgtcatttgagataaataaagagtggttaacaaaggtaatttaccaagtggaggaagttgactacagtttatgcaattcatgagtttaaca |
16916723 |
T |
|
| Q |
421 |
tcaaccaaacatgccaaactagaaatatctgtcatccagtttggaatattcattccctcgtaaccgctcaacacgaaac |
499 |
Q |
| |
|
|||||||||| | ||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||| |
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|
| T |
16916722 |
tcaaccaaacgtcccaaaatagaaatatctgtcatccagtttggaatattcattccgccgtaacggctcaacccgaaac |
16916644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 22 - 492
Target Start/End: Complemental strand, 16911923 - 16911456
Alignment:
| Q |
22 |
tcaatcataagttctgtgaggttaggcatcttaactgcaatatttctcaggaggaaagatgcaccatgagcattaaactctttagtttttcctccaacat |
121 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||||| |||||||| ||||||| ||||| || || ||||| ||||| ||||||||||| |
|
|
| T |
16911923 |
tcaatcataagttctttgaggttaggcatcttacctgcaatatctctcagga---aagatgcttcatgatcaatatcctcttcagtttctcctccaacat |
16911827 |
T |
|
| Q |
122 |
aaacttcctcaacagagggaaggcttggaagttcaaatatagggatactctgaatgcttaacttagaaagttgtgatagcatctctactccttcgattct |
221 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16911826 |
aaacttccttaacagagggaaggcttggaagttcaaattgagggatactctgaatgcttaacttagaaagttgtgatagcatctctactccttcgattct |
16911727 |
T |
|
| Q |
222 |
cagcaccctctttaaattaggtaaatcatatagtgtcatttctcttaatgacggaaaagccttgtcttttgctttttcataaggtgaatcatcaatgtac |
321 |
Q |
| |
|
|| |||||||| |||||||||||||||| ||||||||||||| |||||||||||||||| || || ||| |||||||||||||||||||||||||| |
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|
| T |
16911726 |
caacaccctctctaaattaggtaaatcaaatagtgtcatttccgttaatgacggaaaagcattttcggttgaaatttcataaggtgaatcatcaatgtac |
16911627 |
T |
|
| Q |
322 |
atcacatttgtcatttgagatagataaagagtggttaaacaatttaatttaccaagtggaggaagttgacgacagtttatgcacttcatgagtttaacat |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||| | |||||||||||| |||||||||||||||| |
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|
| T |
16911626 |
ttcacatttgtcatttgagatagataaagagtgtttaaaaaaggtaatttaccaagtggaggaagttggctacagtttatgcaattcatgagtttaacat |
16911527 |
T |
|
| Q |
422 |
caaccaaacatgccaaactagaaatatctgtcatccagtttggaatattcattccctcgtaaccgctcaac |
492 |
Q |
| |
|
||||||||| | ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
16911526 |
caaccaaacgtcccaaaatagaaatatctgtcatccagtttggaatattcattccccggtaaccgctcaac |
16911456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 332 - 407
Target Start/End: Complemental strand, 16974935 - 16974869
Alignment:
| Q |
332 |
tcatttgagatagataaagagtggttaaacaatttaatttaccaagtggaggaagttgacgacagtttatgcactt |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||| |
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|
| T |
16974935 |
tcatttgagatagataaagagtggttaaac---------taccaagtcgaggaagttgacgacagtttctgcactt |
16974869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 477
Target Start/End: Original strand, 16837327 - 16837465
Alignment:
| Q |
339 |
agatagataaagagtggttaaacaatttaatttaccaagtggaggaagttgacgacagtttatgcacttcatgagtttaacatcaaccaaacatgccaaa |
438 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||||||| ||||| | |||||||| | || || |||| |||||| ||| || | | ||||| |
|
|
| T |
16837327 |
agatacataaagagtggttaaacaaggtaatttaccaagtgggggaagccgctgacagtttttacagttatagagtataacataaactaacccttccaaa |
16837426 |
T |
|
| Q |
439 |
ctagaaatatctgtcatccagtttggaatattcattccc |
477 |
Q |
| |
|
||||| ||| | ||||||| ||||||||||| |||||| |
|
|
| T |
16837427 |
atagaagtatttttcatccaatttggaatatttattccc |
16837465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 345 - 386
Target Start/End: Complemental strand, 18807727 - 18807686
Alignment:
| Q |
345 |
ataaagagtggttaaacaatttaatttaccaagtggaggaag |
386 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
18807727 |
ataaagagtggttaaacaaggtaatttaccaagtggaggaag |
18807686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 345 - 386
Target Start/End: Complemental strand, 18874724 - 18874683
Alignment:
| Q |
345 |
ataaagagtggttaaacaatttaatttaccaagtggaggaag |
386 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
18874724 |
ataaagagtggttaaacaaggtaatttaccaagtggaggaag |
18874683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 16985936 - 16985987
Alignment:
| Q |
188 |
aaagttgtgatagcatctctactccttcgattctcagcaccctctttaaatt |
239 |
Q |
| |
|
||||||||| |||||||||||||||||||| | | | ||||||||||||||| |
|
|
| T |
16985936 |
aaagttgtgttagcatctctactccttcgacttttaacaccctctttaaatt |
16985987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 386
Target Start/End: Original strand, 16842444 - 16842485
Alignment:
| Q |
345 |
ataaagagtggttaaacaatttaatttaccaagtggaggaag |
386 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
16842444 |
ataaagagtggttaaacaaggtaatttaccaagtgggggaag |
16842485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 188 - 244
Target Start/End: Complemental strand, 16869664 - 16869608
Alignment:
| Q |
188 |
aaagttgtgatagcatctctactccttcgattctcagcaccctctttaaattaggta |
244 |
Q |
| |
|
||||||||| |||||||||||||||||||| | || |||||||| |||||| |||| |
|
|
| T |
16869664 |
aaagttgtggtagcatctctactccttcgacttccaacaccctctctaaattcggta |
16869608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 309 - 387
Target Start/End: Complemental strand, 3358 - 3280
Alignment:
| Q |
309 |
atcatcaatgtacatcacatttgtcatttgagatagataaagagtggttaaacaatttaatttaccaagtggaggaagt |
387 |
Q |
| |
|
||||||||||||| | | || | ||||| ||||| ||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
3358 |
atcatcaatgtactttaaatctctcattccagatacataaagagtggttaaacaaggtaatttaccaagtggaggaagt |
3280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0511
Description:
Target: scaffold0511; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 345 - 386
Target Start/End: Original strand, 7980 - 8021
Alignment:
| Q |
345 |
ataaagagtggttaaacaatttaatttaccaagtggaggaag |
386 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
7980 |
ataaagagtggttaaacaaggtaatttaccaagtggaggaag |
8021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 245
Target Start/End: Complemental strand, 38941038 - 38940981
Alignment:
| Q |
188 |
aaagttgtgatagcatctctactccttcgattctcagcaccctctttaaattaggtaa |
245 |
Q |
| |
|
||||||||| |||||||||||||||||||| | || |||||||| |||||| ||||| |
|
|
| T |
38941038 |
aaagttgtggtagcatctctactccttcgacttccaacaccctctctaaatttggtaa |
38940981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 188 - 248
Target Start/End: Original strand, 7636 - 7696
Alignment:
| Q |
188 |
aaagttgtgatagcatctctactccttcgattctcagcaccctctttaaattaggtaaatc |
248 |
Q |
| |
|
||||||||| ||||||||||||||||||| | || |||||||| |||||| |||||||| |
|
|
| T |
7636 |
aaagttgtggtagcatctctactccttcggcttccaacaccctctctaaatttggtaaatc |
7696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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