View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7380_low_7 (Length: 496)
Name: NF7380_low_7
Description: NF7380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7380_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-147; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 187 - 479
Target Start/End: Complemental strand, 10098513 - 10098222
Alignment:
| Q |
187 |
tataccaattacttaaaaatattaaacactcaatgccaaacaataataaaaacctaatgttgctttcatatcactttcaaagatccatgaatggattcac |
286 |
Q |
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| T |
10098513 |
tatactaattacttaaaaatgttaaacactcaatgccaaacaataataaaaac-taatgttgctttcatatcactttcaaagatccatgaatggattcac |
10098415 |
T |
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| Q |
287 |
attttttacacaaacatttgttcatgtctacttgaaatatgtttttgtttcacattttgtaatcttttgttagctcgtggctttcgtttgttagagatgt |
386 |
Q |
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| T |
10098414 |
attttttacacaaacatttgttcatgtctacttgaaatatgtttttgtttcacattttgtaatcttttgttagctcgtggctttcgtttgttagagatgt |
10098315 |
T |
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| Q |
387 |
ttgaggagttctcagaaattgttcgtcatatattgtgaaaagctaatcccttctagtaatagacacaaacgtttgtaatccaaaaaacctatt |
479 |
Q |
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| T |
10098314 |
ttgaggagttctcagatattgttcgtcatatattgtgaaaagctaatcccttctattaatagacacaaacgtttgtaatccaaaaaacttatt |
10098222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 33 - 183
Target Start/End: Complemental strand, 10098706 - 10098555
Alignment:
| Q |
33 |
ataaaatgttacatgtataaaattctaccgtttttt-agtgatgactaatatatttcnnnnnnnnntatttgacactcaatgagttctccatatcaaact |
131 |
Q |
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|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
10098706 |
ataaaatgttacatgtataaaattctaccgtttttttagtggtgactaatatatttcaaaaaaaattatttgacactcaatgagttctccatatcaaact |
10098607 |
T |
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| Q |
132 |
gaattttcttcttatggaggagaattcttatcacttatttgagatgttcaaa |
183 |
Q |
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| T |
10098606 |
gaattttcttcttatggaggagaattcttatcacttatttaagatgttcaaa |
10098555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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