View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7381_high_10 (Length: 231)
Name: NF7381_high_10
Description: NF7381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7381_high_10 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 28 - 231
Target Start/End: Original strand, 47116595 - 47116798
Alignment:
| Q |
28 |
attatttggtggaaaactggtaaggaaagagaaaatgaaagaaattatttgtgctaattgtggtattaattactgaaagttcggggagacagttacaaag |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47116595 |
attatttggtggaaaactggtaaggaaagagaaaatgaaagaaattatttgtgctaattgtggtattaattactgaaagttcggggagacagttacaaag |
47116694 |
T |
|
| Q |
128 |
aaaatttccacgtcatacatctcattcaatgatgttatgttaatgaacgaatccccaatccttccacaatagatggacaccactccaagcttcctcatac |
227 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47116695 |
aaaagttccacgtcatacatctcattcaatgatgttatgttaatgaacgaatccccaatccttccacaatagatggacaccactccaagcttcctcatac |
47116794 |
T |
|
| Q |
228 |
cctt |
231 |
Q |
| |
|
|||| |
|
|
| T |
47116795 |
cctt |
47116798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University