View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7381_high_3 (Length: 394)
Name: NF7381_high_3
Description: NF7381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7381_high_3 |
 | |
|
| [»] scaffold0032 (1 HSPs) |
| | |
|
| [»] scaffold0229 (1 HSPs) |
| | |
|
| [»] scaffold0519 (1 HSPs) |
| | |
|
| [»] scaffold0263 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 13)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 141 - 393
Target Start/End: Complemental strand, 36445119 - 36444868
Alignment:
| Q |
141 |
cacaatattggaccttgtttagacacgagtggaccaattcatcgtctatannnnnnncactcacgttacgggactctaaacaaggtaggtagtctgcatg |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
36445119 |
cacaatattggaccttgtttagacacgagtggaccaattcatcgtctatatttttt-cactcacattacgggactctaaacaaggtaggtagtctgcatg |
36445021 |
T |
|
| Q |
241 |
tcacttgaatcaatccaaacttaattatatggacaaattggaactagtttatatgatgaagagtatcatctattataattcgttttacacctttatcttt |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36445020 |
tcacttgaatcaatccaaacttaattatatggacaaattggaactagtttatatgatgaagagtatcatctattataattcgttttacacctttatcttt |
36444921 |
T |
|
| Q |
341 |
atttattgtagttcttgaattttgtctaatagccctgatgtccatctcattga |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
36444920 |
atttattgtagttcttgaattttgtctaatagccctgatctcccactcattga |
36444868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 34392243 - 34392127
Alignment:
| Q |
1 |
taccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaag |
100 |
Q |
| |
|
||||||| ||||||||||| |||||| |||| ||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
34392243 |
taccattgaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatcttactttataaatgctttatttgatatat-ttttttaaag |
34392145 |
T |
|
| Q |
101 |
tgtgtgccacatggcaca |
118 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
34392144 |
ggtgtgccacatggcaca |
34392127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 11 - 125
Target Start/End: Original strand, 10163501 - 10163615
Alignment:
| Q |
11 |
gtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaagtgtgtgccac |
110 |
Q |
| |
|
||||||||||||||||| |||||||||||| | |||||||||||| || ||||||||||||| |||||||||||||||||||||||||| ||||| || |
|
|
| T |
10163501 |
gtaccaatgttatataacattgaccaataaaaatgtgccacatactgatattactttataaataatttatttgatatatgttttttaaagtatgtgctac |
10163600 |
T |
|
| Q |
111 |
atggcacaccttaat |
125 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
10163601 |
atggcataccttaat |
10163615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 6 - 118
Target Start/End: Complemental strand, 23863958 - 23863849
Alignment:
| Q |
6 |
ttaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaagtgtgt |
105 |
Q |
| |
|
|||||||||||||| ||||| ||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
23863958 |
ttaaggtaccaatggtatat--tattggtcaattagagtgtgccacctaccaatgttactttataaatgctttatttgatatat-atttttaaagggtgt |
23863862 |
T |
|
| Q |
106 |
gccacatggcaca |
118 |
Q |
| |
|
||||||||||||| |
|
|
| T |
23863861 |
gccacatggcaca |
23863849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 7381701 - 7381794
Alignment:
| Q |
1 |
taccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgtttt |
94 |
Q |
| |
|
||||||||||||||||||| |||||| ||||| ||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
7381701 |
taccattaaggtaccaatggtatatactattggccaattagagtgtgccatctaccaatgttactttataaattctttatttgatatatttttt |
7381794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 21603968 - 21604055
Alignment:
| Q |
1 |
taccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatgctttatttgatata |
88 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||| | ||||| ||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
21603968 |
taccattaaggtaccaatggtatataccattgaccaattatagtgtatcacctaccaatgttactttataaatgttttatttgatata |
21604055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 61 - 125
Target Start/End: Complemental strand, 3668112 - 3668048
Alignment:
| Q |
61 |
ttactttataaatgctttatttgatatatgttttttaaagtgtgtgccacatggcacaccttaat |
125 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
3668112 |
ttactttataagtgctttattttatatatgttttttaaagtgagtgccacatggcacatcttaat |
3668048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 4 - 96
Target Start/End: Complemental strand, 37358080 - 37357988
Alignment:
| Q |
4 |
cattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgtttttt |
96 |
Q |
| |
|
|||||||||||||||| |||||| |||||| ||| |||||||| ||| || ||||||||||||||||||||||||||| |||| | |||||| |
|
|
| T |
37358080 |
cattaaggtaccaatgatatataccattgactaattagagtgtgtcacctatcaatgttactttataaatgctttatttaatatttttttttt |
37357988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 35 - 120
Target Start/End: Complemental strand, 41095914 - 41095830
Alignment:
| Q |
35 |
caataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaagtgtgtgccacatggcacacc |
120 |
Q |
| |
|
|||| |||||| |||| |||||||||||||||||||||||||||||||||| || ||||||||| || |||||||||||||||| |
|
|
| T |
41095914 |
caattagagtgcaccacctaccaatgttactttataaatgctttatttgatagat-ttttttaaaaggtatgccacatggcacacc |
41095830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 14566015 - 14565908
Alignment:
| Q |
1 |
taccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaag |
100 |
Q |
| |
|
||||| |||||||||||||||||||| ||||| ||| ||||||||| |||||||||| ||| ||||||| | ||| |||||||||| ||||||||||| |
|
|
| T |
14566015 |
taccactaaggtaccaatgttatatatcattgatcaagtagagtgtgctacataccaatattattttataagtacttcatttgatata-gttttttaaag |
14565917 |
T |
|
| Q |
101 |
tgtgtgcca |
109 |
Q |
| |
|
||||||| |
|
|
| T |
14565916 |
gatgtgcca |
14565908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 4775643 - 4775760
Alignment:
| Q |
1 |
taccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaat-gctttatttgatatatgttttttaaa |
99 |
Q |
| |
|
|||||||||| |||||||| |||||| ||||| ||||| ||| ||| || ||||||| ||||||||| ||| | ||||||| |||||| ||||||||| |
|
|
| T |
4775643 |
taccattaagctaccaatgatatatattattggccaattagaatgtctcatctaccaatcttactttattaattgttttatttaatatat-ttttttaaa |
4775741 |
T |
|
| Q |
100 |
gtgtgtgccacatggcaca |
118 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
4775742 |
ggatgtgccacatggcaca |
4775760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 100
Target Start/End: Original strand, 4779635 - 4779692
Alignment:
| Q |
42 |
agtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaag |
100 |
Q |
| |
|
|||||||| | || |||||||||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
4779635 |
agtgtgccgcctaacaatgttactttataaatactttatttgatatat-ttttttaaag |
4779692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 94
Target Start/End: Original strand, 34903962 - 34904004
Alignment:
| Q |
52 |
ataccaatgttactttataaatgctttatttgatatatgtttt |
94 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
34903962 |
atactaatgttattttataaatgctttatttgatatatttttt |
34904004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 113; Significance: 4e-57; HSPs: 16)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 38010776 - 38010652
Alignment:
| Q |
1 |
taccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
38010776 |
taccattaaggtaccaatgttatataacattggccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgttttttaaag |
38010677 |
T |
|
| Q |
101 |
tgtgtgccacatggcacaccttaat |
125 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
38010676 |
tgtgtgccacatggcacaccttaat |
38010652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 29989971 - 29990095
Alignment:
| Q |
1 |
taccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaag |
100 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
29989971 |
taccattaaggtatcaatgttatataacattgaccaataagagtgtgccacataccaatgttactttataaatgttttatttgatatatgttttttaaag |
29990070 |
T |
|
| Q |
101 |
tgtgtgccacatggcacaccttaat |
125 |
Q |
| |
|
||||||||||||| ||||||||||| |
|
|
| T |
29990071 |
tgtgtgccacatgtcacaccttaat |
29990095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 13478207 - 13478083
Alignment:
| Q |
1 |
taccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaag |
100 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
13478207 |
taccattaaggaaccaatgttatataacattgaccaataagagtgtgccacataccattgttactttataaatattttatttgatatatgttttttaaag |
13478108 |
T |
|
| Q |
101 |
tgtgtgccacatggcacaccttaat |
125 |
Q |
| |
|
||||||||||||| ||||||||||| |
|
|
| T |
13478107 |
tgtgtgccacatgtcacaccttaat |
13478083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 13015390 - 13015514
Alignment:
| Q |
1 |
taccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
13015390 |
taccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttactttataaatattttatttgatatatattttttaaag |
13015489 |
T |
|
| Q |
101 |
tgtgtgccacatggcacaccttaat |
125 |
Q |
| |
|
| ||||||||||| |||| |||||| |
|
|
| T |
13015490 |
tatgtgccacatgtcacatcttaat |
13015514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 13086762 - 13086886
Alignment:
| Q |
1 |
taccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| | |||||||||| |
|
|
| T |
13086762 |
taccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttattttataaatattttatttgatatgtattttttaaag |
13086861 |
T |
|
| Q |
101 |
tgtgtgccacatggcacaccttaat |
125 |
Q |
| |
|
||||||||||||| ||||||||||| |
|
|
| T |
13086862 |
tgtgtgccacatgtcacaccttaat |
13086886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 13421172 - 13421050
Alignment:
| Q |
1 |
taccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaag |
100 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||| |||||||||||| || ||| ||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
13421172 |
taccattaaggtatcaatgttatataacattgatcaataagagtgtatcaaatatcaatgttactttataaatgctttatttaatatatgttttttaaag |
13421073 |
T |
|
| Q |
101 |
tgtgtgccacatggcacacctta |
123 |
Q |
| |
|
||| ||||||||| ||||||||| |
|
|
| T |
13421072 |
tgtatgccacatgacacacctta |
13421050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 36 - 119
Target Start/End: Original strand, 37881185 - 37881268
Alignment:
| Q |
36 |
aataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaagtgtgtgccacatggcacac |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||| |||| |
|
|
| T |
37881185 |
aataagagtgtgccacataccaatgttactttataaatattttatttgatatatgtttttcaaaatgtgtgccacatggtacac |
37881268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 11607696 - 11607588
Alignment:
| Q |
1 |
taccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaag |
100 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||| | |||||||||| ||||||| |||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
11607696 |
taccattaaggtaccaatggtatataccattgaccaattatagtgtgccacctaccaatattactttataaatgttttatttgatata-cttttttaaag |
11607598 |
T |
|
| Q |
101 |
tgtgtgccac |
110 |
Q |
| |
|
||||||||| |
|
|
| T |
11607597 |
ggtgtgccac |
11607588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 33858700 - 33858592
Alignment:
| Q |
1 |
taccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaag |
100 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||| | |||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
33858700 |
taccattaaggtaccaatagtatatatcattgaccaattatagtgtgccacctaccaatgttactttataaatgttttatttgatata-cttttttaaag |
33858602 |
T |
|
| Q |
101 |
tgtgtgccac |
110 |
Q |
| |
|
||||||||| |
|
|
| T |
33858601 |
ggtgtgccac |
33858592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 1826268 - 1826384
Alignment:
| Q |
1 |
taccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaag |
100 |
Q |
| |
|
||||||||| ||||||||| |||||| |||| |||| |||||||| ||| ||||||| ||||||| || |||||||||||||||||| |||||||||| |
|
|
| T |
1826268 |
taccattaaagtaccaatggtatataccattggtcaattagagtgtgtcacctaccaatattactttgtagatgctttatttgatatat-ttttttaaag |
1826366 |
T |
|
| Q |
101 |
tgtgtgccacatggcaca |
118 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
1826367 |
tatgtgccacatggcaca |
1826384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 19357423 - 19357330
Alignment:
| Q |
1 |
taccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgtttt |
94 |
Q |
| |
|
|||||||| |||||||||| |||||| |||| ||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
19357423 |
taccattagggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattactttataaatgctttatttgatatatttttt |
19357330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 12 - 125
Target Start/End: Original strand, 10292893 - 10293004
Alignment:
| Q |
12 |
taccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaagtgtgtgccaca |
111 |
Q |
| |
|
|||||||||||||||| |||| ||||||||| |||||||| ||| ||||||| ||| ||| || |||||||| |||| |||||||||| ||||||||| |
|
|
| T |
10292893 |
taccaatgttatataacattggccaataagaatgtgccacgtactaatgttattttgtaagtgttttatttg--atattttttttaaagggtgtgccacg |
10292990 |
T |
|
| Q |
112 |
tggcacaccttaat |
125 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
10292991 |
tggcacaccttaat |
10293004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 4 - 110
Target Start/End: Complemental strand, 39570202 - 39570097
Alignment:
| Q |
4 |
cattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaagtgt |
103 |
Q |
| |
|
|||||| ||| ||||| |||||| |||| ||||| |||||||| ||| |||||||||||||||||||||| ||||||||||||| |||||||||| || |
|
|
| T |
39570202 |
cattaaagtatcaatggtatataccattggccaattagagtgtgtcacctaccaatgttactttataaatgttttatttgatata-cttttttaaagggt |
39570104 |
T |
|
| Q |
104 |
gtgccac |
110 |
Q |
| |
|
||||||| |
|
|
| T |
39570103 |
gtgccac |
39570097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 8 - 118
Target Start/End: Original strand, 33271630 - 33271739
Alignment:
| Q |
8 |
aaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaagtgtgtgc |
107 |
Q |
| |
|
|||||||||||| |||||| |||| ||||| |||||||| || || ||||||||||| |||||||||||||||||||||| |||||||||| || || |
|
|
| T |
33271630 |
aaggtaccaatgatatatatcattggccaattagagtgtgtcatctatcaatgttacttgataaatgctttatttgatatat-ttttttaaaggatgcgc |
33271728 |
T |
|
| Q |
108 |
cacatggcaca |
118 |
Q |
| |
|
||| ||||||| |
|
|
| T |
33271729 |
cacgtggcaca |
33271739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 9827797 - 9827894
Alignment:
| Q |
1 |
taccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaa |
98 |
Q |
| |
|
||||||||||||||||||| |||||| || |||| ||||||| |||| ||||||| ||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
9827797 |
taccattaaggtaccaatggtatatacctttagtcaattagagtgtaccacctaccaatattactttataaatattttatttgatatatcttttttaa |
9827894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 47 - 110
Target Start/End: Original strand, 42148201 - 42148263
Alignment:
| Q |
47 |
gccacataccaatgttactttataaatgctttatttgatatatgttttttaaagtgtgtgccac |
110 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||||||||| |||||||||| |||| |||| |
|
|
| T |
42148201 |
gccacctaccaatgttactttataaatgttttatttgatatat-ttttttaaagggtgtaccac |
42148263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 113; Significance: 4e-57; HSPs: 15)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 47186184 - 47186308
Alignment:
| Q |
1 |
taccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
47186184 |
taccattaaggtaccaatgttatataacattggccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgttttttaaag |
47186283 |
T |
|
| Q |
101 |
tgtgtgccacatggcacaccttaat |
125 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
47186284 |
tgtgtgccacatggcacaccttaat |
47186308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 31187232 - 31187108
Alignment:
| Q |
1 |
taccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
31187232 |
taccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttactttataaatgttttatttgatatatattttttaaag |
31187133 |
T |
|
| Q |
101 |
tgtgtgccacatggcacaccttaat |
125 |
Q |
| |
|
||||||||||||| ||||||||||| |
|
|
| T |
31187132 |
tgtgtgccacatgtcacaccttaat |
31187108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 42664682 - 42664806
Alignment:
| Q |
1 |
taccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaag |
100 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
42664682 |
taccattaaggtaccaaagttatataacattgaccaataagagtgtgccacataccaatgttattttataaatgttttatttgatatatgttttttaaag |
42664781 |
T |
|
| Q |
101 |
tgtgtgccacatggcacaccttaat |
125 |
Q |
| |
|
||||||||||||| ||||||||||| |
|
|
| T |
42664782 |
tgtgtgccacatgtcacaccttaat |
42664806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 34029453 - 34029329
Alignment:
| Q |
1 |
taccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
34029453 |
taccattaaggtaccaatgttatataacattgatcaataagagtgtgccacatactaatgttactttataaatgttttatttgatatatgttttttaaag |
34029354 |
T |
|
| Q |
101 |
tgtgtgccacatggcacaccttaat |
125 |
Q |
| |
|
|||||| ||||| ||||||||||| |
|
|
| T |
34029353 |
tgtgtgtcacatatcacaccttaat |
34029329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 50934509 - 50934613
Alignment:
| Q |
1 |
taccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaag |
100 |
Q |
| |
|
||||||||||||||||||| |||||| |||| ||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||| || ||||||| |
|
|
| T |
50934509 |
taccattaaggtaccaatggtatataccattggccaattagagtgtgccacttaccaatgttactttataaatgcattatttgatatattttatttaaag |
50934608 |
T |
|
| Q |
101 |
tgtgt |
105 |
Q |
| |
|
|||| |
|
|
| T |
50934609 |
ggtgt |
50934613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 33509689 - 33509805
Alignment:
| Q |
1 |
taccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaag |
100 |
Q |
| |
|
|||||||||||||| ||| |||||| |||||||||| |||||||||||| ||||||| |||||||||| |||||||||||||| ||| |||||||||| |
|
|
| T |
33509689 |
taccattaaggtactaatagtatatatcattgaccaattagagtgtgccacctaccaatattactttatagatgctttatttgatgtat-ttttttaaag |
33509787 |
T |
|
| Q |
101 |
tgtgtgccacatggcaca |
118 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
33509788 |
gatgtgccacatggcaca |
33509805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 44380263 - 44380371
Alignment:
| Q |
1 |
taccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaag |
100 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||| | |||||| ||| || |||| |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
44380263 |
taccattaaggtaccaatggtatatactattgaccaattatagtgtgtcacctatcaatattactttataaatgctttatttgatata-cttttttaaag |
44380361 |
T |
|
| Q |
101 |
tgtgtgccac |
110 |
Q |
| |
|
||||||||| |
|
|
| T |
44380362 |
ggtgtgccac |
44380371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 47426359 - 47426471
Alignment:
| Q |
1 |
taccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaag |
100 |
Q |
| |
|
|||||||||||||||||| |||||| |||| ||||| |||||||| ||| || ||||||||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
47426359 |
taccattaaggtaccaatagtatataccattggccaattagagtgtgtcacctatcaatgttactttatagatgctttatttgatatat-ttttttaaag |
47426457 |
T |
|
| Q |
101 |
tgtgtgccacatgg |
114 |
Q |
| |
|
||||||||||||| |
|
|
| T |
47426458 |
ggtgtgccacatgg |
47426471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 5 - 118
Target Start/End: Original strand, 37742738 - 37742850
Alignment:
| Q |
5 |
attaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaagtgtg |
104 |
Q |
| |
|
||||||||||||||| |||||| |||| |||| ||||| |||||| |||||||||||| ||| ||||||||||||||||||| |||||||||| ||| |
|
|
| T |
37742738 |
attaaggtaccaatggtatatatcattggtcaattagagtatgccacctaccaatgttacattaccaatgctttatttgatatat-ttttttaaagagtg |
37742836 |
T |
|
| Q |
105 |
tgccacatggcaca |
118 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
37742837 |
tgccacgtggcaca |
37742850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 44 - 117
Target Start/End: Original strand, 6022998 - 6023071
Alignment:
| Q |
44 |
tgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaagtgtgtgccacatggcac |
117 |
Q |
| |
|
|||||||||||| ||||||| ||| ||| | ||||||||||||||| |||||||||| ||||||||| |||||| |
|
|
| T |
6022998 |
tgtgccacatactaatgttattttgtaagtactttatttgatatatattttttaaagggtgtgccacgtggcac |
6023071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 35094555 - 35094655
Alignment:
| Q |
1 |
taccattaaggtaccaatgttatataatattgaccaataa--gagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaa |
98 |
Q |
| |
|
||||||||| |||||| || |||||| |||||| ||| | |||| |||||| ||||||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
35094555 |
taccattaaagtaccagtggtatataccattgactaattatagagtatgccacctaccaatgttactttataaatattttatttgatatat-ttttttaa |
35094653 |
T |
|
| Q |
99 |
ag |
100 |
Q |
| |
|
|| |
|
|
| T |
35094654 |
ag |
35094655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 21963117 - 21963073
Alignment:
| Q |
1 |
taccattaaggtaccaatgttatataatattgaccaataagagtg |
45 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
21963117 |
taccattaaggtatcaatgttatataacattgaccaataagagtg |
21963073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 35 - 110
Target Start/End: Original strand, 17466316 - 17466390
Alignment:
| Q |
35 |
caataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaagtgtgtgccac |
110 |
Q |
| |
|
|||| |||||||| ||| || ||||||||||||||||||| |||| ||||||||| |||||||||| || |||||| |
|
|
| T |
17466316 |
caattagagtgtgtcacctatcaatgttactttataaatgatttagttgatatat-ttttttaaagggtatgccac |
17466390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 32319527 - 32319468
Alignment:
| Q |
1 |
taccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatg |
60 |
Q |
| |
|
||||||||||||||||||| |||||| |||| ||||| |||||||||||| ||| |||| |
|
|
| T |
32319527 |
taccattaaggtaccaatggtatataccattggccaattagagtgtgccacctacaaatg |
32319468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 10018728 - 10018671
Alignment:
| Q |
1 |
taccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaa |
58 |
Q |
| |
|
||||||||| |||||||||||||||| |||| |||||| |||||||||| |||||| |
|
|
| T |
10018728 |
taccattaaagtaccaatgttatataccattggtcaataaaagtgtgccacctaccaa |
10018671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 109; Significance: 1e-54; HSPs: 17)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 52012787 - 52012911
Alignment:
| Q |
1 |
taccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
52012787 |
taccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatgttttatttgatatatgttttttaaag |
52012886 |
T |
|
| Q |
101 |
tgtgtgccacatggcacaccttaat |
125 |
Q |
| |
|
||||||||||||| ||||||||||| |
|
|
| T |
52012887 |
tgtgtgccacatgtcacaccttaat |
52012911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 9799525 - 9799401
Alignment:
| Q |
1 |
taccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
9799525 |
taccattaaggtaccaatgttatataacattgaccaacaagaatgtgccacataccaatgttactttataaatgttttatttaatatatgttttttaaag |
9799426 |
T |
|
| Q |
101 |
tgtgtgccacatggcacaccttaat |
125 |
Q |
| |
|
|||||| |||||| ||||||||||| |
|
|
| T |
9799425 |
tgtgtgtcacatgtcacaccttaat |
9799401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 47943167 - 47943292
Alignment:
| Q |
1 |
taccattaaggtaccaatgttatataatatt-gaccaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaa |
99 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||| | |||||||||||||||| ||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
47943167 |
taccattaaaataccaatgttatataatatttgaccaataaaaatgtgccacataccaatattattttataaatattttatttgatatatgttttttaaa |
47943266 |
T |
|
| Q |
100 |
gtgtgtgccacatggcacaccttaat |
125 |
Q |
| |
|
||||||||||||| ||||||||||| |
|
|
| T |
47943267 |
atgtgtgccacatgtcacaccttaat |
47943292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 21260803 - 21260919
Alignment:
| Q |
1 |
taccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaag |
100 |
Q |
| |
|
||||||||||||||||||| |||||| |||| ||||| |||||||| ||| |||||||||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
21260803 |
taccattaaggtaccaatgatatatatcattggccaattagagtgtgtcacctaccaatgttactttataaatgttttatttgatatat-ttttttaaag |
21260901 |
T |
|
| Q |
101 |
tgtgtgccacatggcaca |
118 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
21260902 |
ggtgtgccacatggcaca |
21260919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 12473713 - 12473829
Alignment:
| Q |
1 |
taccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaag |
100 |
Q |
| |
|
||||||||||||||||||| |||||| |||| ||||| |||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
12473713 |
taccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatatat-ttttttaaag |
12473811 |
T |
|
| Q |
101 |
tgtgtgccacatggcaca |
118 |
Q |
| |
|
||||| |||||| |||| |
|
|
| T |
12473812 |
ggtgtggcacatgacaca |
12473829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 12528122 - 12528238
Alignment:
| Q |
1 |
taccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaag |
100 |
Q |
| |
|
||||||||||||||||||| |||||| |||| ||||| |||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
12528122 |
taccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatatat-ttttttaaag |
12528220 |
T |
|
| Q |
101 |
tgtgtgccacatggcaca |
118 |
Q |
| |
|
||||| |||||| |||| |
|
|
| T |
12528221 |
ggtgtggcacatgacaca |
12528238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 33249536 - 33249420
Alignment:
| Q |
1 |
taccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaag |
100 |
Q |
| |
|
|||||||||||||| |||| |||||| |||| ||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33249536 |
taccattaaggtacaaatggtatatacaattggccaattagagtgtgtcacctaccaatgttactttataaatgctttatttgatatat-atttttaaag |
33249438 |
T |
|
| Q |
101 |
tgtgtgccacatggcaca |
118 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
33249437 |
ggtgtgccacatggcaca |
33249420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 46719953 - 46720023
Alignment:
| Q |
15 |
caatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatgctttatttgat |
85 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
46719953 |
caatgttatataacattgaccaataagagtgtgccacatacaaatgttactttataaatactttatttgat |
46720023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 22343346 - 22343462
Alignment:
| Q |
1 |
taccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaag |
100 |
Q |
| |
|
||||||||||||| ||||| |||||| |||||||||| |||||||| || || |||||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
22343346 |
taccattaaggtatcaatggtatatatcattgaccaattagagtgtgtcatctatcaatgttactttataaatgctttatttgatatat-tattttaaag |
22343444 |
T |
|
| Q |
101 |
tgtgtgccacatggcaca |
118 |
Q |
| |
|
||||||||||| |||| |
|
|
| T |
22343445 |
gatgtgccacatgacaca |
22343462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 35869733 - 35869625
Alignment:
| Q |
1 |
taccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaag |
100 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||| | | |||||||| ||||||||||||| |||||||| ||||||||||||| |||||||||| |
|
|
| T |
35869733 |
taccattaaggtaccaatggtatataccattgaccaattataatgtgccacctaccaatgttactatataaatgttttatttgatata-cttttttaaag |
35869635 |
T |
|
| Q |
101 |
tgtgtgccac |
110 |
Q |
| |
|
||||||||| |
|
|
| T |
35869634 |
ggtgtgccac |
35869625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 51811923 - 51812030
Alignment:
| Q |
1 |
taccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaag |
100 |
Q |
| |
|
||||||||||||| ||| | |||||| ||||| ||||| ||||| |||||| ||||||||||||||||||||| ||| |||||||||| |||||||||| |
|
|
| T |
51811923 |
taccattaaggtatcaaagatatatattattggccaattagagtatgccacctaccaatgttactttataaattttttttttgatatat-ttttttaaag |
51812021 |
T |
|
| Q |
101 |
tgtgtgcca |
109 |
Q |
| |
|
|||||||| |
|
|
| T |
51812022 |
ggtgtgcca |
51812030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 52910211 - 52910126
Alignment:
| Q |
1 |
taccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatgctttatttgata |
86 |
Q |
| |
|
|||||| | ||||||||||||||||| |||| ||||| | |||||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
52910211 |
taccataatggtaccaatgttatataccattggccaattaaagtgtgccacctaccaatattactttataaatgctttatttgata |
52910126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 89
Target Start/End: Complemental strand, 49999716 - 49999662
Alignment:
| Q |
35 |
caataagagtgtgccacataccaatgttactttataaatgctttatttgatatat |
89 |
Q |
| |
|
|||| |||||||| ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
49999716 |
caattagagtgtgtcacataccaatgttattttataaatgctttatttgatatat |
49999662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 78
Target Start/End: Complemental strand, 34829241 - 34829168
Alignment:
| Q |
5 |
attaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatgcttt |
78 |
Q |
| |
|
||||||||||||||| |||||| | || ||||| | |||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
34829241 |
attaaggtaccaatgatatatatcaatggccaattaaagtgtgtcacctaccaatgttactttataaatgcttt |
34829168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 125
Target Start/End: Original strand, 46720200 - 46720249
Alignment:
| Q |
77 |
ttatttgatatatgtttt-ttaaagtgtgtgccacatggcacaccttaat |
125 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
46720200 |
ttatttgatatatgtttttttaaagtgtgtgccacatgacacaccttaat |
46720249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 55590491 - 55590559
Alignment:
| Q |
1 |
taccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttat |
69 |
Q |
| |
|
||||||||||||||||||| |||||| ||||| |||| | |||||| ||| ||||||||||||||||| |
|
|
| T |
55590491 |
taccattaaggtaccaatggtatatatcattgatcaattatagtgtgtcacctaccaatgttactttat |
55590559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 116
Target Start/End: Original strand, 33174581 - 33174636
Alignment:
| Q |
58 |
atgttactttataaatgctttatttgatatatgttttttaaagtgtgtgccacatggca |
116 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||||||||| ||||||||| ||||| |
|
|
| T |
33174581 |
atgttactttataaatgttttatttgatata---tttttaaagggtgtgccacgtggca |
33174636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 109; Significance: 1e-54; HSPs: 13)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 8809802 - 8809678
Alignment:
| Q |
1 |
taccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
8809802 |
taccattaaggtaccaatgttatataacattgaccaataagagtgtgccacgtaccaatgttactttataaatgttttatttgatatatgttttttaaag |
8809703 |
T |
|
| Q |
101 |
tgtgtgccacatggcacaccttaat |
125 |
Q |
| |
|
||||||||||||| ||||||||||| |
|
|
| T |
8809702 |
tgtgtgccacatgtcacaccttaat |
8809678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 35998261 - 35998385
Alignment:
| Q |
1 |
taccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||| ||||||| || ||||||| ||||||||||||||||| |
|
|
| T |
35998261 |
taccattaaggtaccaatgttatataacattgattaataagagtgtgccacatatcaatgttattttataagtgttttattttatatatgttttttaaag |
35998360 |
T |
|
| Q |
101 |
tgtgtgccacatggcacaccttaat |
125 |
Q |
| |
|
|||||||||||||||||| |||||| |
|
|
| T |
35998361 |
tgtgtgccacatggcacatcttaat |
35998385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 29119486 - 29119370
Alignment:
| Q |
1 |
taccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaag |
100 |
Q |
| |
|
||||||||||||||||||| |||||| |||| ||||| |||||||||||| || || |||||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
29119486 |
taccattaaggtaccaatggtatataccattggccaattagagtgtgccacctatcattgttactttatagatgctttatttgatatat-ttttttaaag |
29119388 |
T |
|
| Q |
101 |
tgtgtgccacatggcaca |
118 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
29119387 |
ggtgtgccacatggcaca |
29119370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 32676145 - 32676261
Alignment:
| Q |
1 |
taccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaag |
100 |
Q |
| |
|
||||||||||||||||||| |||||| |||| ||||| ||| || |||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
32676145 |
taccattaaggtaccaatggtatataccattggccaattagaatgcaccacctaccaatgttactttataaatgctttatttgatatat-ttttttaaag |
32676243 |
T |
|
| Q |
101 |
tgtgtgccacatggcaca |
118 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
32676244 |
catgtgccacatggcaca |
32676261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 2569046 - 2569161
Alignment:
| Q |
1 |
taccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaag |
100 |
Q |
| |
|
||||||||||||||||||| |||||| ||| ||||| |||||||||||| |||||||||||| ||| |||||||||||||||||| |||||||||| |
|
|
| T |
2569046 |
taccattaaggtaccaatggtatatatcatttgccaattagagtgtgccacctaccaatgttacattaccaatgctttatttgatata--ttttttaaag |
2569143 |
T |
|
| Q |
101 |
tgtgtgccacatggcaca |
118 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
2569144 |
ggtgtgccatgtggcaca |
2569161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 4 - 125
Target Start/End: Original strand, 35534418 - 35534535
Alignment:
| Q |
4 |
cattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaagtgt |
103 |
Q |
| |
|
||||||| |||||||||||||||| |||| || | |||||||||||||||| ||||| | ||||||| || ||||||| ||| |||||||||| || |
|
|
| T |
35534418 |
cattaagataccaatgttatataacattggacactgagagtgtgccacatactaatgtcaatttataagtgttttatttaata----ttttttaaagggt |
35534513 |
T |
|
| Q |
104 |
gtgccacatggcacaccttaat |
125 |
Q |
| |
|
|||||||||| ||||||||||| |
|
|
| T |
35534514 |
gtgccacatgacacaccttaat |
35534535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 5 - 110
Target Start/End: Original strand, 8462141 - 8462245
Alignment:
| Q |
5 |
attaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaagtgtg |
104 |
Q |
| |
|
||||| ||||||||| |||||| ||||| |||| | |||||||||| ||||||||||| |||||||||| ||||||| ||||| |||||||||| | | |
|
|
| T |
8462141 |
attaaagtaccaatggtatatatcattgatcaattatagtgtgccacctaccaatgttattttataaatgttttatttaatata-cttttttaaagggcg |
8462239 |
T |
|
| Q |
105 |
tgccac |
110 |
Q |
| |
|
|||||| |
|
|
| T |
8462240 |
tgccac |
8462245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 25161318 - 25161402
Alignment:
| Q |
1 |
taccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatgctttatttgat |
85 |
Q |
| |
|
||||||||| || ||||| |||||| |||||||||| | |||||||||| || ||||||||||||||||||| |||||||||| |
|
|
| T |
25161318 |
taccattaaagtctcaatggtatataccattgaccaattacagtgtgccacctaacaatgttactttataaatgttttatttgat |
25161402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 18056186 - 18056134
Alignment:
| Q |
1 |
taccattaaggtaccaatgttatataatattgaccaataagagtgtgccacat |
53 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
18056186 |
taccattaaactaccaatgttatataatattgaccaatgaaagtgtgccacat |
18056134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 29 - 84
Target Start/End: Complemental strand, 3688972 - 3688917
Alignment:
| Q |
29 |
attgaccaataagagtgtgccacataccaatgttactttataaatgctttatttga |
84 |
Q |
| |
|
|||||||||| ||||||| | || |||||||||||||||||||||| ||||||||| |
|
|
| T |
3688972 |
attgaccaattagagtgtacaacctaccaatgttactttataaatgttttatttga |
3688917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 106
Target Start/End: Original strand, 16679744 - 16679806
Alignment:
| Q |
44 |
tgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaagtgtgtg |
106 |
Q |
| |
|
||||||| |||| ||| || ||||||| ||||||||||||||||| |||||||||| ||||| |
|
|
| T |
16679744 |
tgtgccatatacaaatattcttttataagtgctttatttgatatatattttttaaagggtgtg |
16679806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 8555481 - 8555522
Alignment:
| Q |
44 |
tgtgccacataccaatgttactttataaatgctttatttgat |
85 |
Q |
| |
|
|||| ||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
8555481 |
tgtgtcacataccaatgttattttataaatgttttatttgat |
8555522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 6223060 - 6223148
Alignment:
| Q |
1 |
taccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatgctttatttgatatat |
89 |
Q |
| |
|
||||||||| ||| |||||||||||| ||||| |||| | ||||| || ||| |||||||| ||||||| | |||||||||||||| |
|
|
| T |
6223060 |
taccattaaagtatcaatgttatatatcattgatcaattaaggtgtgtcatatatcaatgttattttataagtattttatttgatatat |
6223148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 34245576 - 34245700
Alignment:
| Q |
1 |
taccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaag |
100 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
34245576 |
taccattaaggtattaatgttatataacattgaccaataaaagtgtgccacgtaccaatgttactttataaatactttatttgatatatgttttttaaag |
34245675 |
T |
|
| Q |
101 |
tgtgtgccacatggcacaccttaat |
125 |
Q |
| |
|
||||||||||||| ||||||||||| |
|
|
| T |
34245676 |
tgtgtgccacatgacacaccttaat |
34245700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 11113565 - 11113684
Alignment:
| Q |
1 |
taccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaag |
100 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||| |||||||||||| ||||||| ||||||||||| ||| ||||||||||||| |||||||||| |
|
|
| T |
11113565 |
taccattaaggtaccaatgctatataacattgactaataagagtgtgtcacatactaatgttactttgtaagtgctttatttgat-----ttttttaaag |
11113659 |
T |
|
| Q |
101 |
tgtgtgccacatggcacaccttaat |
125 |
Q |
| |
|
|| |||||||||||||||||||| |
|
|
| T |
11113660 |
gatgcgccacatggcacaccttaat |
11113684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 1212006 - 1211890
Alignment:
| Q |
1 |
taccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaag |
100 |
Q |
| |
|
||||||||||||||||||| |||||| |||| | ||| || ||||||||| | |||||||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
1212006 |
taccattaaggtaccaatggtatataccattggctaattagtgtgtgccacctttcaatgttactttatcgatgctttatttgatatat-ttttttaaag |
1211908 |
T |
|
| Q |
101 |
tgtgtgccacatggcaca |
118 |
Q |
| |
|
||||||||| ||||||| |
|
|
| T |
1211907 |
ggtgtgccacgtggcaca |
1211890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 5404038 - 5403940
Alignment:
| Q |
1 |
taccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaag |
100 |
Q |
| |
|
|||||||||||||| |||| |||||| ||||| || | ||||| |||||| |||||||||||||||||| ||| |||||||||||||| |||||||||| |
|
|
| T |
5404038 |
taccattaaggtactaatggtatatattattggtcagttagagtctgccacctaccaatgttactttatagatgttttatttgatatat-ttttttaaag |
5403940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 31030112 - 31030154
Alignment:
| Q |
12 |
taccaatgttatataatattgaccaataagagtgtgccacata |
54 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
31030112 |
taccaatgttatataatattggtcaataacagtgtgccacata |
31030154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 113
Target Start/End: Complemental strand, 32644956 - 32644888
Alignment:
| Q |
43 |
gtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaagtgtgtgccacatg |
113 |
Q |
| |
|
||||| ||| ||| |||||||||||| |||| ||||||||| ||||| |||||||||| |||||||||||| |
|
|
| T |
32644956 |
gtgtgtcacctacaaatgttacttta-aaatactttatttgttatat-ttttttaaagggtgtgccacatg |
32644888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 89; Significance: 9e-43; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 1514812 - 1514936
Alignment:
| Q |
1 |
taccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
1514812 |
taccattaaggtaccaatgttatataacattgatcaataagagtgtaccacataccaatgttactttataaatgttttatttgatatatattttttaaaa |
1514911 |
T |
|
| Q |
101 |
tgtgtgccacatggcacaccttaat |
125 |
Q |
| |
|
||||| ||| ||| ||||||||||| |
|
|
| T |
1514912 |
tgtgtaccatatgtcacaccttaat |
1514936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 18168394 - 18168503
Alignment:
| Q |
1 |
taccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaag |
100 |
Q |
| |
|
||||||||||||||||||| |||||| ||||| |||| ||||||| |||| ||||||| ||||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
18168394 |
taccattaaggtaccaatggtatatatcattgatcaattagagtgtcccacctaccaatcttactttataaatactttatttgatatattttttttaaag |
18168493 |
T |
|
| Q |
101 |
tgtgtgccac |
110 |
Q |
| |
|
|||||||| |
|
|
| T |
18168494 |
gatgtgccac |
18168503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 18631951 - 18632060
Alignment:
| Q |
1 |
taccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaag |
100 |
Q |
| |
|
||||||||||||||||||| |||||| ||||| |||| ||||||| |||| ||||||| ||||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
18631951 |
taccattaaggtaccaatggtatatatcattgatcaattagagtgtcccacctaccaatcttactttataaatactttatttgatatattttttttaaag |
18632050 |
T |
|
| Q |
101 |
tgtgtgccac |
110 |
Q |
| |
|
|||||||| |
|
|
| T |
18632051 |
gatgtgccac |
18632060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 41179725 - 41179609
Alignment:
| Q |
1 |
taccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaag |
100 |
Q |
| |
|
||||||||||||||||||| |||||| |||| ||||| | |||||| ||| |||| ||||||||||||||||| ||||||| |||||| |||||||| | |
|
|
| T |
41179725 |
taccattaaggtaccaatgatatatatcattggccaattaaagtgtgtcacctaccgatgttactttataaatgttttatttaatatat-ttttttaatg |
41179627 |
T |
|
| Q |
101 |
tgtgtgccacatggcaca |
118 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
41179626 |
gatgtgccacatggcaca |
41179609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 5 - 118
Target Start/End: Complemental strand, 24337988 - 24337876
Alignment:
| Q |
5 |
attaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaagtgtg |
104 |
Q |
| |
|
||||||||| ||||| |||||| || | |||| ||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||| ||| |
|
|
| T |
24337988 |
attaaggtagcaatggtatataccatcggtcaattagagtgtgccatctaccaatgttactttatagatgctttatttgatatat-atttttaaagggtg |
24337890 |
T |
|
| Q |
105 |
tgccacatggcaca |
118 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
24337889 |
tgccacatagcaca |
24337876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 4708469 - 4708353
Alignment:
| Q |
1 |
taccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaag |
100 |
Q |
| |
|
||||| ||||||||||||| ||||| || ||||| | |||||| ||| |||||||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
4708469 |
taccactaaggtaccaatggcatatatcatgcgccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatatat-atttttaaag |
4708371 |
T |
|
| Q |
101 |
tgtgtgccacatggcaca |
118 |
Q |
| |
|
||||||||| ||||||| |
|
|
| T |
4708370 |
ggtgtgccacgtggcaca |
4708353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 11254189 - 11254082
Alignment:
| Q |
1 |
taccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaag |
100 |
Q |
| |
|
||||||||| |||||||| |||||| |||||||| || ||| | |||| |||||||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
11254189 |
taccattaaattaccaatgatatatatcattgaccattat-agtataccacctaccaatgttactttataaatgttttatttgatata-catttttaaag |
11254092 |
T |
|
| Q |
101 |
tgtgtgccac |
110 |
Q |
| |
|
||||||||| |
|
|
| T |
11254091 |
ggtgtgccac |
11254082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 32825997 - 32825874
Alignment:
| Q |
1 |
taccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaag |
100 |
Q |
| |
|
||||||||| ||| ||||||| |||| |||| ||||| ||||| || |||||| |||||||| |||||| || |||||||||||||| ||||| |||| |
|
|
| T |
32825997 |
taccattaaagtatcaatgttgtataccattggccaattagagtatgtcacatatcaatgttattttatatgtgttttatttgatatat-tttttaaaag |
32825899 |
T |
|
| Q |
101 |
tgtgtgccacatggcacaccttaat |
125 |
Q |
| |
|
|||| |||||| |||| |||||| |
|
|
| T |
32825898 |
gttgtgtcacatgacacatcttaat |
32825874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 35341545 - 35341653
Alignment:
| Q |
1 |
taccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaag |
100 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||| | |||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
35341545 |
taccattaaggtaccaatgatatataccattgaccaattatagtgtgccacctaccaatgttactttataaatgttttatttgatata-cttttttaaag |
35341643 |
T |
|
| Q |
101 |
tgtgtgccac |
110 |
Q |
| |
|
||||||||| |
|
|
| T |
35341644 |
ggtgtgccac |
35341653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 48250163 - 48250274
Alignment:
| Q |
1 |
taccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaag |
100 |
Q |
| |
|
||||||||||||||||||| |||||| |||| |||| |||||||||||| |||||||||||||||||| |||||||||||||||| | |||||||||| |
|
|
| T |
48250163 |
taccattaaggtaccaatgatatatatcattggtcaattagagtgtgccacctaccaatgttactttatagatgctttatttgatat-ttttttttaaag |
48250261 |
T |
|
| Q |
101 |
tgtgtgccacatg |
113 |
Q |
| |
|
|| ||| ||||| |
|
|
| T |
48250262 |
ggtatgctacatg |
48250274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 29 - 118
Target Start/End: Original strand, 48072424 - 48072512
Alignment:
| Q |
29 |
attgaccaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaagtgtgtgccacatggcaca |
118 |
Q |
| |
|
||||| |||| |||||||||||||| |||||||| ||||||||| |||||||||| ||| |||||||||| ||||||||| ||||||| |
|
|
| T |
48072424 |
attgatcaattagagtgtgccacatttcaatgttattttataaatattttatttgatgtat-ttttttaaagggtgtgccacgtggcaca |
48072512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 56 - 110
Target Start/End: Complemental strand, 32694677 - 32694624
Alignment:
| Q |
56 |
caatgttactttataaatgctttatttgatatatgttttttaaagtgtgtgccac |
110 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
32694677 |
caatgttactttataaattctttatttgatatat-ttttttaaagggtgtgccac |
32694624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 31307036 - 31306951
Alignment:
| Q |
1 |
taccattaaggtaccaatgttatataatattgaccaata-agagtgtgccacataccaatgttactttataaatgctttatttgat |
85 |
Q |
| |
|
||||||||| ||| ||||| |||||| |||| ||||| | ||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
31307036 |
taccattaaagtatcaatgatatatatcattgtccaatttaaagtgtgctacctaccaatgttactttataaatgctttatttgat |
31306951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 95
Target Start/End: Original strand, 40856478 - 40856534
Alignment:
| Q |
39 |
aagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttt |
95 |
Q |
| |
|
||||||||| ||| ||||||||||| |||||| ||| |||||||||| ||| ||||| |
|
|
| T |
40856478 |
aagagtgtgtcacctaccaatgttattttatagatgttttatttgatgtattttttt |
40856534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0032 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: scaffold0032
Description:
Target: scaffold0032; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 34203 - 34306
Alignment:
| Q |
1 |
taccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaag |
100 |
Q |
| |
|
||||||||||||||||||| |||||| ||||| ||||| |||||||||||| ||||||| ||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
34203 |
taccattaaggtaccaatggtatatattattggccaattagagtgtgccacttaccaatattactttataaatattttatttgatata--ttttttaaag |
34300 |
T |
|
| Q |
101 |
tgtgtg |
106 |
Q |
| |
|
||||| |
|
|
| T |
34301 |
ggtgtg |
34306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0229 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0229
Description:
Target: scaffold0229; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 13168 - 13051
Alignment:
| Q |
1 |
taccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaag |
100 |
Q |
| |
|
||||||||||||||||||| |||||| |||| | ||| || ||||||||| | |||||||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
13168 |
taccattaaggtaccaatggtatataccattggctaattagtgtgtgccacctttcaatgttactttatcgatgctttatttgatatat-ttttttaaag |
13070 |
T |
|
| Q |
101 |
tg-tgtgccacatggcaca |
118 |
Q |
| |
|
| |||||||| ||||||| |
|
|
| T |
13069 |
ggttgtgccacgtggcaca |
13051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0519 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0519
Description:
Target: scaffold0519; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 11204 - 11311
Alignment:
| Q |
1 |
taccattaaggtaccaatgttatataatattgaccaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgttttttaaag |
100 |
Q |
| |
|
||||||||| |||||||| |||||| |||||||| || ||| | |||| |||||||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
11204 |
taccattaaattaccaatgatatatatcattgaccattat-agtataccacctaccaatgttactttataaatgttttatttgatata-catttttaaag |
11301 |
T |
|
| Q |
101 |
tgtgtgccac |
110 |
Q |
| |
|
||||||||| |
|
|
| T |
11302 |
ggtgtgccac |
11311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0263 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0263
Description:
Target: scaffold0263; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 23233 - 23168
Alignment:
| Q |
29 |
attgaccaataagagtgtgccacataccaatgttactttataaatgctttatttgatatatgtttt |
94 |
Q |
| |
|
|||| ||||| |||||||||||| ||||||| ||||||||||||| |||||||||||||| |||| |
|
|
| T |
23233 |
attggccaattagagtgtgccacctaccaattttactttataaatattttatttgatatatttttt |
23168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University