View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7381_low_1 (Length: 498)
Name: NF7381_low_1
Description: NF7381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7381_low_1 |
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| [»] scaffold0212 (1 HSPs) |
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Alignment Details
Target: scaffold0212 (Bit Score: 489; Significance: 0; HSPs: 1)
Name: scaffold0212
Description:
Target: scaffold0212; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 1 - 493
Target Start/End: Original strand, 12005 - 12497
Alignment:
| Q |
1 |
gactgcctggatacagaccagattttgtccatgattattaaggtaaccagataagctccaggtttagttgtagttccgcggatagaggagctgcttcgag |
100 |
Q |
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| T |
12005 |
gactgcctggatacagaccagattttgtccatgattattaaggtaaccagataagctccaggtttagttgtagttccgcggatagaggagctgcttcgag |
12104 |
T |
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| Q |
101 |
cattggtatgaaacccggaatattttatttgaaatcgcgatgagttaaagaaacccacccggaattcagtccatgataggatagggaaagaagcttgtgc |
200 |
Q |
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| T |
12105 |
cattggtatgaaacccggaatattttatttgaaatcgcgatgagttaaagaaacccacccggaattcagtccatgataggatagggaaagaagcttgtgc |
12204 |
T |
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| Q |
201 |
atctttctattttatgtttgttgatggatctatcaaagtggtatcggagattttttcttaatggaaacttgtataggcccctatggctctcctaaaaccc |
300 |
Q |
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| T |
12205 |
atctttctattttatgtttgttgatggatctatcaaagtggtatcggagattttttcttaatggaaacttgtataggcccctatggctctcctaaaaccc |
12304 |
T |
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| Q |
301 |
ttcataagggatatggctataatgagaatatcttgctttccgcacccgctagtgcacatacactttcgtttacttgggctcgtgaggtggtgggaaatgg |
400 |
Q |
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| T |
12305 |
ttcataagggatatggctataatgagaatatcttgctttccgcacccgctagtgcacatacactttcgtttacttgggctcgtgaggtggtgggaaatgg |
12404 |
T |
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| Q |
401 |
cctgatctatgcttatgctcttgtctaaggagtccgcagactcttattagactgcttgtgcctatgtctcgcgaaatccatgatgtccatctc |
493 |
Q |
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| T |
12405 |
cctgatctatgcttatgctcttgtctaaggagtccgcagactcttattagactgcttgtgcctatgtctcgcgaaatccatgatgttcatctc |
12497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 140; Significance: 4e-73; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 35 - 234
Target Start/End: Original strand, 16576868 - 16577067
Alignment:
| Q |
35 |
ttattaaggtaaccagataagctccaggtttagttgtagttccgcggatagaggagctgcttcgagcattggtatgaaacccggaatattttatttgaaa |
134 |
Q |
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| T |
16576868 |
ttattaaggttatcagataagctccaggtttagttgtagtttcgtggatagaggagttgcttcgagtattggtatgaaacccgaaatattttatttgaaa |
16576967 |
T |
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| Q |
135 |
tcgcgatgagttaaagaaacccacccggaattcagtccatgataggatagggaaagaagcttgtgcatctttctattttatgtttgttgatggatctatc |
234 |
Q |
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| T |
16576968 |
tcgtgatgagttaaagaaatcaacccgaaattcagtccatgataggatagggaaagaagcttgtgcatctttctattttacaattgatgatggatctatc |
16577067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 9628888 - 9628815
Alignment:
| Q |
1 |
gactgcctggatacagaccagattttgtccatgattattaaggtaaccagataagctccaggtttagttgtagt |
74 |
Q |
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| T |
9628888 |
gactgcctagatatagagcagattttgtccatgattattaaggtaactagataagctccaggtttagttgtagt |
9628815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 438 - 486
Target Start/End: Original strand, 21805420 - 21805468
Alignment:
| Q |
438 |
agactcttattagactgcttgtgcctatgtctcgcgaaatccatgatgt |
486 |
Q |
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| T |
21805420 |
agactcttattagaatgtttgtgcctatgtcttgcgaaatccataatgt |
21805468 |
T |
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