View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7381_low_10 (Length: 314)

Name: NF7381_low_10
Description: NF7381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7381_low_10
NF7381_low_10
[»] chr5 (8 HSPs)
chr5 (16-314)||(17589061-17589359)
chr5 (78-270)||(17583110-17583303)
chr5 (170-314)||(38233344-38233488)
chr5 (170-235)||(25606618-25606683)
chr5 (232-314)||(17583022-17583104)
chr5 (171-314)||(22887903-22888046)
chr5 (169-211)||(16469521-16469563)
chr5 (91-123)||(39850396-39850428)
[»] chr7 (3 HSPs)
chr7 (16-314)||(14737426-14737717)
chr7 (79-270)||(14744009-14744200)
chr7 (232-314)||(14744216-14744298)
[»] chr8 (4 HSPs)
chr8 (170-314)||(35066161-35066305)
chr8 (170-249)||(23237972-23238051)
chr8 (91-132)||(4438288-4438329)
chr8 (91-131)||(16337999-16338039)
[»] chr1 (4 HSPs)
chr1 (170-259)||(10057665-10057754)
chr1 (173-313)||(2750124-2750264)
chr1 (91-131)||(42560989-42561029)
chr1 (91-131)||(40368064-40368104)
[»] chr3 (4 HSPs)
chr3 (170-314)||(27521768-27521912)
chr3 (170-314)||(27522658-27522802)
chr3 (190-247)||(23688147-23688204)
chr3 (190-247)||(24060384-24060441)
[»] chr2 (3 HSPs)
chr2 (188-259)||(22829899-22829970)
chr2 (69-130)||(11852669-11852729)
chr2 (201-249)||(28594677-28594725)
[»] chr6 (1 HSPs)
chr6 (168-300)||(6891415-6891544)
[»] chr4 (2 HSPs)
chr4 (181-311)||(22119305-22119435)
chr4 (204-278)||(7705431-7705505)


Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 16 - 314
Target Start/End: Complemental strand, 17589359 - 17589061
Alignment:
Q  16 acctgtgggacactagttatatataaaggaaatatgttgttttgagtgacttattcacttatagttataccattgaaacaaatttgtctataataatgtt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||| ||||||    
T  17589359 acctgtgggacactagttatatataaaggaaatatgttgttttgagtgacttgttcactttcagttataccattgaaacaaatttgtctataacaatgtt 17589260  T
Q  116 ttattgttggtgtcatacgttcaaaacgatttggccccctctaagaaaaggctctgctcaaccaccattgggttcacctttggatcgagtgttgtaggga 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17589259 ttattgttggtgtcatacgttcaaaacgatttggccccctctaagaaaaggctctgctcaaccaccattgggttcacctttggatcgagtgttgtaggga 17589160  T
Q  216 ttgagtttgttgatttgtttcttctacttcttcgcccgataaggtataaaagggacatcaacacctttactttgactaagatatttgctaacaagatca 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  17589159 ttgagtttgttgatttgtttcttctacttcttcgcccgataaggtataaaagggacatcaacacctttactttgaataagatatttgcgaacaagatca 17589061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 78 - 270
Target Start/End: Complemental strand, 17583303 - 17583110
Alignment:
Q  78 agttataccattgaaacaaatttgtctataataatgttttattgttggtgtcatacgttcaaaacgatttggccccctctaagaaaaggctctgctcaac 177  Q
    ||||||||| ||||||||||||  | ||||| |||||| ||||||||||||||| ||||||||| ||||||||||| |||||||||| |   ||||||||    
T  17583303 agttatacccttgaaacaaattattttataagaatgttgtattgttggtgtcattcgttcaaaaagatttggccccttctaagaaaatgtcttgctcaac 17583204  T
Q  178 caccatt-gggttcacctttggatcgagtgttgtagggattgagtttgttgatttgtttcttctacttcttcgcccgataaggtataaaaggga 270  Q
    |||| || |||||||| ||||||||||||||||| || |||||||| ||||||||||||||||| |||||||| || || |||| |||||||||    
T  17583203 caccctttgggttcacgtttggatcgagtgttgtgggaattgagttggttgatttgtttcttctgcttcttcgtccaattaggtgtaaaaggga 17583110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 170 - 314
Target Start/End: Complemental strand, 38233488 - 38233344
Alignment:
Q  170 tgctcaaccaccattgggttcacctttggatcgagtgttgtagggattgagtttgttgatttgtttcttctacttcttcgcccgataaggtataaaaggg 269  Q
    ||||||||| || |||||| |||| ||||| ||||||||||||| |||||||||  | | ||||||| ||| |||||||| | |||||||  |||| |||    
T  38233488 tgctcaaccgcccttgggtgcacccttggaacgagtgttgtaggaattgagtttacttagttgtttcctctgcttcttcgtcagataaggcgtaaagggg 38233389  T
Q  270 acatcaacacctttactttgactaagatatttgctaacaagatca 314  Q
    || |||||| ||| || || | ||||| |||  ||||||||||||    
T  38233388 acctcaacatcttcacctttaataagacattctctaacaagatca 38233344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 235
Target Start/End: Original strand, 25606618 - 25606683
Alignment:
Q  170 tgctcaaccaccattgggttcacctttggatcgagtgttgtagggattgagtttgttgatttgttt 235  Q
    |||||||||  | ||||||||||| ||||||||||||||||||||||| | |||||||| ||||||    
T  25606618 tgctcaaccgtccttgggttcacccttggatcgagtgttgtagggattaaatttgttgagttgttt 25606683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 314
Target Start/End: Complemental strand, 17583104 - 17583022
Alignment:
Q  232 gtttcttctacttcttcgcccgataaggtataaaagggacatcaacacctttactttgactaagatatttgctaacaagatca 314  Q
    |||||||||  ||||| | ||||||||| |||||||||||| ||||| |||| | |||| ||||||||| | |||||||||||    
T  17583104 gtttcttctggttctttgtccgataaggcataaaagggacaacaacatctttgccttgaataagatattcgataacaagatca 17583022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 171 - 314
Target Start/End: Original strand, 22887903 - 22888046
Alignment:
Q  171 gctcaaccaccattgggttcacctttggatcgagtgttgtagggattgagtttgttgatttgtttcttctacttcttcgcccgataaggtataaaaggga 270  Q
    ||||||||||| |||  |||||| ||||| |||||||||||||  ||| |||||  || ||||| ||||| |||| ||| |  ||||||  |||||| ||    
T  22887903 gctcaaccacccttgaattcacccttggaccgagtgttgtaggagttgtgtttggagagttgttacttctgcttcatcgtcaaataaggcgtaaaagaga 22888002  T
Q  271 catcaacacctttactttgactaagatatttgctaacaagatca 314  Q
      |||||| |||||| | || |||||||||| || |||||||||    
T  22888003 tgtcaacatctttacctcgaataagatatttccttacaagatca 22888046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 211
Target Start/End: Original strand, 16469521 - 16469563
Alignment:
Q  169 ctgctcaaccaccattgggttcacctttggatcgagtgttgta 211  Q
    ||||||||||||| |||||||| || |||||||||||||||||    
T  16469521 ctgctcaaccacccttgggttcccccttggatcgagtgttgta 16469563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 123
Target Start/End: Original strand, 39850396 - 39850428
Alignment:
Q  91 aaacaaatttgtctataataatgttttattgtt 123  Q
    ||||||||||||||||||||||||| |||||||    
T  39850396 aaacaaatttgtctataataatgttatattgtt 39850428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 16 - 314
Target Start/End: Original strand, 14737426 - 14737717
Alignment:
Q  16 acctgtgggacactagttatatataaaggaaatatgttgttttgagtgacttattcacttatagttataccattgaaacaaatttgtctataataatgtt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  14737426 acctgtgggacactagttatatataaaggaaatatgttgttttgagtgacttgttcacttacagttataccattgaaacaaatttgtctataataatgtt 14737525  T
Q  116 ttattgttggtgtcatacgttcaaaacgatttggccccctctaagaaaaggctctgctcaaccaccattgggttcacctttggatcgagtgttgtaggga 215  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14737526 ttattgttggtgtcatacgttc--aacgatttggccccctctaagaaaaggctctgctcaaccaccattgggttcacctttggatcgagtgttgtaggga 14737623  T
Q  216 ttgagtttgttgatttgtttcttctacttcttcgcccgataaggtataaaagggacatcaacacctttactttgactaagatatttgctaacaagatca 314  Q
    |||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  14737624 ttgagtttgttgatttgtttcttctacttcttcgccc-----ggtataaaagggacatcaacacctttactttgaataagatatttgctaacaagatca 14737717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 79 - 270
Target Start/End: Original strand, 14744009 - 14744200
Alignment:
Q  79 gttataccattgaaacaaatttgtctataataatgttttattgttggtgtcatacgttcaaaacgatttggccccctctaagaaaaggctctgctcaacc 178  Q
    |||||||| ||||||||||||  | ||||| |||||| |||||||||||||||  |||||||| ||||||||||| |||||||||| |   |||||||||    
T  14744009 gttatacccttgaaacaaattattttataagaatgttgtattgttggtgtcatt-gttcaaaaagatttggccccttctaagaaaatgtcttgctcaacc 14744107  T
Q  179 accatt-gggttcacctttggatcgagtgttgtagggattgagtttgttgatttgtttcttctacttcttcgcccgataaggtataaaaggga 270  Q
    ||| || |||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||| || || |||| |||||||||    
T  14744108 accctttgggttcacgtttggatcgagtgttgtaggaattgagtttgttgatttgtttcttctgcttcttcgtccaattaggtgtaaaaggga 14744200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 232 - 314
Target Start/End: Original strand, 14744216 - 14744298
Alignment:
Q  232 gtttcttctacttcttcgcccgataaggtataaaagggacatcaacacctttactttgactaagatatttgctaacaagatca 314  Q
    |||||||||  ||||||| ||||||||| |||||||||||| ||||| |||||| |||| ||||||||| | |||||||||||    
T  14744216 gtttcttctggttcttcgtccgataaggcataaaagggacaacaacatctttaccttgaataagatattcgataacaagatca 14744298  T

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Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 170 - 314
Target Start/End: Original strand, 35066161 - 35066305
Alignment:
Q  170 tgctcaaccaccattgggttcacctttggatcgagtgttgtagggattgagtttgttgatttgtttcttctacttcttcgcccgataaggtataaaaggg 269  Q
    |||||||||  | |||||||||   ||||||||||||||||||| |||||||||  | ||||||||||| | |||||||| | |||||||  ||||||||    
T  35066161 tgctcaaccgtccttgggttcattcttggatcgagtgttgtaggaattgagtttactaatttgtttcttttgcttcttcgtcggataaggcgtaaaaggg 35066260  T
Q  270 acatcaacacctttactttgactaagatatttgctaacaagatca 314  Q
    || |||||| |||||| ||||  ||||||||  ||||||||||||    
T  35066261 acgtcaacatctttaccttgaagaagatattctctaacaagatca 35066305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 249
Target Start/End: Complemental strand, 23238051 - 23237972
Alignment:
Q  170 tgctcaaccaccattgggttcacctttggatcgagtgttgtagggattgagtttgttgatttgtttcttctacttcttcg 249  Q
    |||||||||||| ||| |||||| ||| |||| ||||||||||  ||||| |||||||| ||||||||||| ||| ||||    
T  23238051 tgctcaaccacccttgtgttcacgtttagatctagtgttgtagtaattgaatttgttgagttgtttcttctgcttattcg 23237972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 132
Target Start/End: Original strand, 4438288 - 4438329
Alignment:
Q  91 aaacaaatttgtctataataatgttttattgttggtgtcata 132  Q
    |||||||||| | |||||||||||| ||||||||||||||||    
T  4438288 aaacaaatttttttataataatgttatattgttggtgtcata 4438329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 131
Target Start/End: Original strand, 16337999 - 16338039
Alignment:
Q  91 aaacaaatttgtctataataatgttttattgttggtgtcat 131  Q
    |||||||||||||||||| |||| | |||||||||||||||    
T  16337999 aaacaaatttgtctataagaatgatatattgttggtgtcat 16338039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 170 - 259
Target Start/End: Original strand, 10057665 - 10057754
Alignment:
Q  170 tgctcaaccaccattgggttcacctttggatcgagtgttgtagggattgagtttgttgatttgtttcttctacttcttcgcccgataagg 259  Q
    |||||||||||| ||||||||||||||| | |||||||| |||| ||||| ||| |||  |||||||||||||||||||| | |||||||    
T  10057665 tgctcaaccacctttgggttcacctttgaaacgagtgttataggaattgattttcttgggttgtttcttctacttcttcgtcagataagg 10057754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 173 - 313
Target Start/End: Original strand, 2750124 - 2750264
Alignment:
Q  173 tcaaccaccattgggttcacctttggatcgagtgttgtagggattgagtttgttgatttgtttcttctacttcttcgcccgataaggtataaaagggaca 272  Q
    |||||| || ||||||||||| |||||| |||||||||| | ||||||||||  || ||||||||| | |||||||  | |||||||| ||||||| |      
T  2750124 tcaacctcccttgggttcacccttggattgagtgttgtaagaattgagtttggagagttgtttcttatgcttcttcatcggataaggtgtaaaaggaatg 2750223  T
Q  273 tcaacacctttactttgactaagatatttgctaacaagatc 313  Q
    ||||||  ||||| | || ||||||||| || |||||||||    
T  2750224 tcaacatttttacctcgaataagatattcgcaaacaagatc 2750264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 131
Target Start/End: Complemental strand, 42561029 - 42560989
Alignment:
Q  91 aaacaaatttgtctataataatgttttattgttggtgtcat 131  Q
    |||||||||| |||||||||||||| |||||||||||||||    
T  42561029 aaacaaatttttctataataatgttatattgttggtgtcat 42560989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 131
Target Start/End: Original strand, 40368064 - 40368104
Alignment:
Q  91 aaacaaatttgtctataataatgttttattgttggtgtcat 131  Q
    |||||||||| |||||| ||||||| |||||||||||||||    
T  40368064 aaacaaatttttctatattaatgttatattgttggtgtcat 40368104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 170 - 314
Target Start/End: Complemental strand, 27521912 - 27521768
Alignment:
Q  170 tgctcaaccaccattgggttcacctttggatcgagtgttgtagggattgagtttgttgatttgtttcttctacttcttcgcccgataaggtataaaaggg 269  Q
    ||||||||| || ||||||| | ||||||||||||||||||||| |||||||||||| | || |||||||  |||||| | | |||||||  |||| |||    
T  27521912 tgctcaaccgcctttgggtttatctttggatcgagtgttgtaggaattgagtttgtttagttttttcttcagcttctttgtcggataaggcgtaaatggg 27521813  T
Q  270 acatcaacacctttactttgactaagatatttgctaacaagatca 314  Q
    || |  ||| |||| | |||| ||||||||||  |||||| ||||    
T  27521812 acgtagacatctttccattgaataagatatttagtaacaatatca 27521768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 170 - 314
Target Start/End: Complemental strand, 27522802 - 27522658
Alignment:
Q  170 tgctcaaccaccattgggttcacctttggatcgagtgttgtagggattgagtttgttgatttgtttcttctacttcttcgcccgataaggtataaaaggg 269  Q
    ||||||||| || ||||||| | ||||||||||||||||||||| |||||||||||| | || |||||||  |||||| | | |||||||  |||| |||    
T  27522802 tgctcaaccgcctttgggtttatctttggatcgagtgttgtaggaattgagtttgtttagttttttcttcagcttctttgtcggataaggcgtaaatggg 27522703  T
Q  270 acatcaacacctttactttgactaagatatttgctaacaagatca 314  Q
    || |  ||| |||| | |||| ||||||||||  |||||| ||||    
T  27522702 acgtagacatctttccattgaataagatatttagtaacaatatca 27522658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 247
Target Start/End: Complemental strand, 23688204 - 23688147
Alignment:
Q  190 cacctttggatcgagtgttgtagggattgagtttgttgatttgtttcttctacttctt 247  Q
    |||||||||||||||||||||||| ||||| |||||||| ||||||  ||||||||||    
T  23688204 cacctttggatcgagtgttgtaggaattgaatttgttgacttgttttgtctacttctt 23688147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 247
Target Start/End: Complemental strand, 24060441 - 24060384
Alignment:
Q  190 cacctttggatcgagtgttgtagggattgagtttgttgatttgtttcttctacttctt 247  Q
    |||||||||||||||||||||||| ||||| |||||||| ||||||  ||||||||||    
T  24060441 cacctttggatcgagtgttgtaggaattgaatttgttgacttgttttgtctacttctt 24060384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 259
Target Start/End: Complemental strand, 22829970 - 22829899
Alignment:
Q  188 ttcacctttggatcgagtgttgtagggattgagtttgttgatttgtttcttctacttcttcgcccgataagg 259  Q
    ||||||||||||||||||||| |||| ||| |||||| ||| || ||||||||||||||||| | |||||||    
T  22829970 ttcacctttggatcgagtgttataggaattcagtttgatgagttatttcttctacttcttcggcagataagg 22829899  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 130
Target Start/End: Complemental strand, 11852729 - 11852669
Alignment:
Q  69 ttcacttatagttataccattgaaacaaatttgtctataataatgttttattgttggtgtca 130  Q
    |||||||  ||||||||| || |||||||||||||||||| |||||| ||||||||||||||    
T  11852729 ttcacttccagttataccgtt-aaacaaatttgtctataaaaatgttatattgttggtgtca 11852669  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 28594677 - 28594725
Alignment:
Q  201 cgagtgttgtagggattgagtttgttgatttgtttcttctacttcttcg 249  Q
    ||||||||||||| ||||| ||| |||| ||||||||||||||||||||    
T  28594677 cgagtgttgtaggtattgactttattgagttgtttcttctacttcttcg 28594725  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 168 - 300
Target Start/End: Complemental strand, 6891544 - 6891415
Alignment:
Q  168 tctgctcaaccaccattgggttcacctttggatcgagtgttgtagggattgagtttgttgatttgtttcttctacttcttcgcccgataaggtataaaag 267  Q
    |||||||||||  | ||||||||||| |||||||||   ||||| | ||||||||| || | ||||||||||| |||||| | | |||||| | |||| |    
T  6891544 tctgctcaaccgtccttgggttcacccttggatcga---ttgtatgaattgagtttatttagttgtttcttctgcttctttgtcagataagatgtaaagg 6891448  T
Q  268 ggacatcaacacctttactttgactaagatatt 300  Q
     |||||||||| |||||| |||| |||||||||    
T  6891447 cgacatcaacatctttaccttgaataagatatt 6891415  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 311
Target Start/End: Complemental strand, 22119435 - 22119305
Alignment:
Q  181 cattgggttcacctttggatcgagtgttgtagggattgagtttgttgatttgtttcttctacttcttcgcccgataaggtataaaagggacatcaacacc 280  Q
    ||||| |||| || ||||||||| ||||||||| |||||||||||| | ||||||||||   ||||||    ||||| |  |||||||||| || ||| |    
T  22119435 cattgagttcgcccttggatcgaatgttgtaggaattgagtttgtttagttgtttcttccgattcttcattagataacgcttaaaagggacgtcgacatc 22119336  T
Q  281 tttactttgactaagatatttgctaacaaga 311  Q
    ||||  |||| |||||||||| |||||||||    
T  22119335 tttatcttgaataagatattttctaacaaga 22119305  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 278
Target Start/End: Complemental strand, 7705505 - 7705431
Alignment:
Q  204 gtgttgtagggattgagtttgttgatttgtttcttctacttcttcgcccgataaggtataaaagggacatcaaca 278  Q
    |||||||||| |||||||||  | | || |||||||| |||||||| | |||||||| |||| ||||||||||||    
T  7705505 gtgttgtaggcattgagtttactaaattatttcttctgcttcttcgtcggataaggtgtaaaggggacatcaaca 7705431  T

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