View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7381_low_6 (Length: 360)

Name: NF7381_low_6
Description: NF7381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7381_low_6
NF7381_low_6
[»] chr8 (7 HSPs)
chr8 (7-338)||(38611243-38611569)
chr8 (44-198)||(34726587-34726741)
chr8 (44-198)||(34721459-34721613)
chr8 (62-195)||(34730819-34730952)
chr8 (207-285)||(34726770-34726843)
chr8 (212-257)||(34730951-34730996)
chr8 (220-283)||(34721655-34721713)


Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-169; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 7 - 338
Target Start/End: Original strand, 38611243 - 38611569
Alignment:
Q  7 agcagaacctgtgatgaactgcaaaagtagaaaaaaggtattaccacaggatgaagaagacaaagctgattgacttgattggacagattcaggatgatat 106  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38611243 agcagaaactgtgatgaactgcaaaagtaaaaaaaaggtattaccacaggatgaagaagacaaagctgattgacttgattggacagattcaggatgatat 38611342  T
Q  107 ttacggtgtcttgtattgtgacgtgaaagttgtcatctgcagcttctcttcttttcatcgaactcaaacagatcatggaaccttcagcatttaaagtaaa 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38611343 ttacggtgtcttgtattgtgacgtgaaagttgtcatctgcagcttctcttcttttcatcgaactcaaacagatcatggaaccttcagcatttaaagtaaa 38611442  T
Q  207 ttattcaacaccatccaaaaaagacagcaagtttattcagattgagtagtatagtagtattaacttttaatgatgtgcttggccgatgaaaggtcaagac 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  38611443 ttattcaacaccatccaaaaaagacagcaagtttattcagattgag-----tagtagtattaacttttaatgatgtgcttggctgatgaaaggtcaagac 38611537  T
Q  307 cacacaactttcaaacaggcagcatggcggac 338  Q
    ||||||||||||||||||||||||||||||||    
T  38611538 cacacaactttcaaacaggcagcatggcggac 38611569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 44 - 198
Target Start/End: Original strand, 34726587 - 34726741
Alignment:
Q  44 gtattaccacaggatgaagaagacaaagctgattgacttgattggacagattcaggatgatatttacggtgtcttgtattgtgacgtgaaagttgtcatc 143  Q
    |||||||||| |  |||| |||||||||| ||||| ||||||||||||| || | |||||||||||||| | |||| |||||||  ||||||||||| ||    
T  34726587 gtattaccactgcgtgaataagacaaagccgattggcttgattggacagcttgacgatgatatttacggcgccttgcattgtgatttgaaagttgtcgtc 34726686  T
Q  144 tgcagcttctcttcttttcatcgaactcaaacagatcatggaaccttcagcattt 198  Q
    |||||||| |||||||| |||| ||||||||||||||||||||||||||||||||    
T  34726687 tgcagcttttcttctttccatcaaactcaaacagatcatggaaccttcagcattt 34726741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 44 - 198
Target Start/End: Original strand, 34721459 - 34721613
Alignment:
Q  44 gtattaccacaggatgaagaagacaaagctgattgacttgattggacagattcaggatgatatttacggtgtcttgtattgtgacgtgaaagttgtcatc 143  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||| ||| || | ||  ||  |||||| | |||| ||||||  |||||||  ||| ||    
T  34721459 gtattaccacagggtgacgaagacaaagctgattgacttgattgggcagttttacgagaatgattacggcgccttgcattgtgttgtgaaagacgtcgtc 34721558  T
Q  144 tgcagcttctcttcttttcatcgaactcaaacagatcatggaaccttcagcattt 198  Q
    |||||||| |||||||| |||| ||||||||||||||||||||||||||| ||||    
T  34721559 tgcagcttttcttctttccatcaaactcaaacagatcatggaaccttcagtattt 34721613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 62 - 195
Target Start/End: Original strand, 34730819 - 34730952
Alignment:
Q  62 gaagacaaagctgattgacttgattggacagattcaggatgatatttacggtgtcttgtattgtgacgtgaaagttgtcatctgcagcttctcttctttt 161  Q
    ||||||||| ||||||||||||||||||  | |||||| ||||  |||||  | |||| |||||||||||||||||||  |||||||||||| |||||||    
T  34730819 gaagacaaaactgattgacttgattggagtgcttcaggctgatgcttacgtcgccttgcattgtgacgtgaaagttgttctctgcagcttcttttctttt 34730918  T
Q  162 catcgaactcaaacagatcatggaaccttcagca 195  Q
    |||||||||||  |||||  ||||||||||||||    
T  34730919 catcgaactcagccagattgtggaaccttcagca 34730952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 207 - 285
Target Start/End: Original strand, 34726770 - 34726843
Alignment:
Q  207 ttattcaacaccatccaaaaaagacagcaagtttattcagattgagtagtatagtagtattaacttttaatgatgtgct 285  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||     || || ||||||||||||||||||||||    
T  34726770 ttattcaacaccatccaaaaaagacagcaagttgaatcagattgag-----tattaatattaacttttaatgatgtgct 34726843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 212 - 257
Target Start/End: Original strand, 34730951 - 34730996
Alignment:
Q  212 caacaccatccaaaaaagacagcaagtttattcagattgagtagta 257  Q
    ||||||||| |||||||||||||||||||| ||||| |||||||||    
T  34730951 caacaccattcaaaaaagacagcaagtttaatcagactgagtagta 34730996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 220 - 283
Target Start/End: Original strand, 34721655 - 34721713
Alignment:
Q  220 tccaaaaaagacagcaagtttattcagattgagtagtatagtagtattaacttttaatgatgtg 283  Q
    |||||||||||||||||||| | |||||||||||||||      ||||||||||||||||||||    
T  34721655 tccaaaaaagacagcaagttgaatcagattgagtagtaa-----tattaacttttaatgatgtg 34721713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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