View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7381_low_9 (Length: 318)

Name: NF7381_low_9
Description: NF7381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7381_low_9
NF7381_low_9
[»] chr3 (1 HSPs)
chr3 (20-318)||(1041641-1041923)


Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 20 - 318
Target Start/End: Original strand, 1041641 - 1041923
Alignment:
Q  20 aagacttaagaccaaaaagtaattgatgttgttgtttaccatcttaaaagttgggttgggccaaacacacaaaattaatttttaatctgagaaatgtcta 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  1041641 aagacttaagaccaaaaagtaattgatgttgttgtttaccatcttaaaagttgggttgggccaaacacacaaaattaatttt-aatctgagaaatgtcta 1041739  T
Q  120 ttattataaatgtctattattataaacactatttcaagtcacatcacatccagttagaaactctcaacacacactatatcaagagtgtgactcaagatgg 219  Q
    ||| |               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1041740 ttact---------------tataaacactatttcaagtcacatcacatccagttagaaactctcaacacacactatatcaagagtgtgactcaagatgg 1041824  T
Q  220 cttagtaatgggtgacccaatggatcttagataaatttgcaatagcatgtcagttttagagtcgttgaggtagaaatgaataacatagcaaaatagatc 318  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  1041825 cttagtaatgggtgacccaatggatcttagataattttgcaatagcatgtcagttttagagtcgttgaggtagaaatgaataagatagcaaaatagatc 1041923  T

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