View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7382_high_2 (Length: 448)
Name: NF7382_high_2
Description: NF7382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7382_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 400; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 28 - 435
Target Start/End: Original strand, 28369832 - 28370239
Alignment:
| Q |
28 |
atcatcatcacaactaccgctttcctgtatcaacttataagctctggaacaagctttaagcacaaagttgcaagtgtaactgtcagaaacaacgttgttg |
127 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
28369832 |
atcatcatcacaactaccgctttcctgtatcaacttataagctctggaacaagctttaagcacaaagttgcaagtgtaactatcagaaacaacgttgttg |
28369931 |
T |
|
| Q |
128 |
attagcatttggttataaataagcaaggcttgaagagggaaacaactatgagaaaaagcacgaatcatggtgttggaaatgaaggggttgtggataagaa |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28369932 |
attagcatttggttataaataagcaaggcttgaagagggaaacaactatgagaaaaagcacgaatcatggtgttggaaatgaaggggttgtggataagaa |
28370031 |
T |
|
| Q |
228 |
tggaagaatgttgaaaaagagaataagcgtgtgagaggttaccgaatggagaaagagctgaaaagaaaatgagtttggttgtgaggggaatgtgagagtg |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28370032 |
tggaagaatgttgaaaaagagaataagcgtgtgagaggttaccgaatggagaaagagctgaaaagaaaatgagtttggttgtgaggggaatgtgagagtg |
28370131 |
T |
|
| Q |
328 |
aagacctgatttggtgattatggcttgaagttgttttagttctgatatggatgagagtttgttgagtagggacgttgctcggtaaaatgtgcttcccgtc |
427 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
28370132 |
aagacctgatttggtgattatggcttgaagttgttttagttctgatatggatgagagtttgttgagtagggacgttgctcgggaaaatgtgcttcccgtc |
28370231 |
T |
|
| Q |
428 |
attcttct |
435 |
Q |
| |
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|||||||| |
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| T |
28370232 |
attcttct |
28370239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 25 - 435
Target Start/End: Complemental strand, 44776683 - 44776273
Alignment:
| Q |
25 |
atcatcatcatcacaactaccgctttcctgtatcaacttataagctctggaacaagctttaagcacaaagttgcaagtgtaactgtcagaaacaacgttg |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
44776683 |
atcatcatcatcacaactaccgctttcctgtatcaacttataagctctggaacaagctttaagcacaaagttgcaagtgtaactatcagaaacaacgttg |
44776584 |
T |
|
| Q |
125 |
ttgattagcatttggttataaataagcaaggcttgaagagggaaacaactatgagaaaaagcacgaatcatggtgttggaaatgaaggggttgtggataa |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44776583 |
ttgattagcatttggttataaataagcaaggcttgaagagggaaacaactatgagaaaaagcacgaatcatggtgttggaaatgaaggggttgtggataa |
44776484 |
T |
|
| Q |
225 |
gaatggaagaatgttgaaaaagagaataagcgtgtgagaggttaccgaatggagaaagagctgaaaagaaaatgagtttggttgtgaggggaatgtgaga |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44776483 |
gaatggaagaatgttgaaaaagagaataagcgtgtgagaggttaccgaatggagaaagagctgaaaagaaaatgagtttggttgtgaggggaatgtgaga |
44776384 |
T |
|
| Q |
325 |
gtgaagacctgatttggtgattatggcttgaagttgttttagttctgatatggatgagagtttgttgagtagggacgttgctcggtaaaatgtgcttccc |
424 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
44776383 |
gtgaagacctgatttggtgattatggcttgaagttgttttagttctgacatggatgagagtttgttgagtagggacgttgctcgggaaaatgtgcttccc |
44776284 |
T |
|
| Q |
425 |
gtcattcttct |
435 |
Q |
| |
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||||||||||| |
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|
| T |
44776283 |
gtcattcttct |
44776273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 151 - 234
Target Start/End: Complemental strand, 2349398 - 2349315
Alignment:
| Q |
151 |
caaggcttgaagagggaaacaactatgagaaaaagcacgaatcatggtgttggaaatgaaggggttgtggataagaatggaaga |
234 |
Q |
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|||||||||| |||||||||||| | |||||||||| |||||| |||||| |||| ||||| ||||| ||||||||||||| |
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| T |
2349398 |
caaggcttgaggagggaaacaacctttagaaaaagcatcaatcatagtgttgaaaataaagggtttgtgcgtaagaatggaaga |
2349315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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