View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7382_high_4 (Length: 364)
Name: NF7382_high_4
Description: NF7382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7382_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 33 - 322
Target Start/End: Complemental strand, 51824590 - 51824301
Alignment:
| Q |
33 |
caaaaatcacattttatataccaactgattccatccaattcaaggtttgctgaagagccaaagcctcttgtgtcactagaaattgatgcataatgtcatt |
132 |
Q |
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| T |
51824590 |
caaaaatcacattttatataccaactgattccatccaattcaaggtttgctgaagagccaaagcctcttgtgtcactagaaattgatgcataatgtcatt |
51824491 |
T |
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| Q |
133 |
ttcttagtaaagaaaatcttaattttaattctagtccattgtgcaaattggtttgcctcttgttatttactttgcatatttcctgagtgatgttgtttgg |
232 |
Q |
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| T |
51824490 |
ttcttagtaaagaaaatcttaattttaattctagtccattgtgcaaattggttggcctcttgttatttactttgcatatttcctgagtgatgttgtttgg |
51824391 |
T |
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| Q |
233 |
cctannnnnnnnnnnnnnnnnagtattatgttgtatttgcagagtttctgccaaatcaccatatcaaagaagtgatttcgactctgctcc |
322 |
Q |
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| T |
51824390 |
cctaatatatatatatatataagtattatgttgtatttgcagagtttctgccaaatcaccatatcaaagaagtgatttcgactctgctcc |
51824301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 125 - 201
Target Start/End: Complemental strand, 51827720 - 51827644
Alignment:
| Q |
125 |
atgtcattttcttagtaaagaaaatcttaattttaattctagtccattgtgcaaattggtttgcctcttgttattta |
201 |
Q |
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| T |
51827720 |
atgtcattttcttagtattaaaaatcttaatctagattctagttcattgtgcaaattgatttgcctcttgttattta |
51827644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 303
Target Start/End: Complemental strand, 51827620 - 51827575
Alignment:
| Q |
258 |
ttatgttgtatttgcagagtttctgccaaatcaccatatcaaagaa |
303 |
Q |
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| T |
51827620 |
ttatgttgtgtttgcagagtttctgtctactcaccatatcaaagaa |
51827575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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