View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7382_high_5 (Length: 330)
Name: NF7382_high_5
Description: NF7382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7382_high_5 |
 | |
|
| [»] scaffold0929 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0929 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: scaffold0929
Description:
Target: scaffold0929; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 2790 - 2918
Alignment:
| Q |
1 |
tgacatctaaagataaaatgtgtagattctcttaaaaatgagagtaaatatgcagataatgaaaagaagaaaaggttaaggaaatgctttagttgtttga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2790 |
tgacatctaaagataaaatgtgtagattctcttaaaaataagagtaaatatgcagataatgaaaagaagaaaaggttaaggaaatgctttagttgtttga |
2889 |
T |
|
| Q |
101 |
aatgctattacttgtctttttcattgtac |
129 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
2890 |
aatgctattacttgtctttttcattgtac |
2918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0929; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 242 - 312
Target Start/End: Original strand, 3031 - 3101
Alignment:
| Q |
242 |
aacaaacgactaaatcttgatgaatttatgtataaagttagctatataaattatgttggctttgtagaaaa |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3031 |
aacaaacgactaaatcttgatgaatttatgtataaagttagctatataaattatgttggctttgtagaaaa |
3101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 6365059 - 6365187
Alignment:
| Q |
1 |
tgacatctaaagataaaatgtgtagattctcttaaaaatgagagtaaatatgcagataatgaaaagaagaaaaggttaaggaaatgctttagttgtttga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6365059 |
tgacatctaaagataaaatgtgtagattctcttaaaaataagagtaaatatgcagataatgaaaagaagaaaaggttaaggaaatgctttagttgtttga |
6365158 |
T |
|
| Q |
101 |
aatgctattacttgtctttttcattgtac |
129 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
6365159 |
aatgctattacttgtctttttcattgtac |
6365187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 242 - 312
Target Start/End: Original strand, 6365300 - 6365370
Alignment:
| Q |
242 |
aacaaacgactaaatcttgatgaatttatgtataaagttagctatataaattatgttggctttgtagaaaa |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6365300 |
aacaaacgactaaatcttgatgaatttatgtataaagttagctatataaattatgttggctttgtagaaaa |
6365370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University