View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7382_high_7 (Length: 303)

Name: NF7382_high_7
Description: NF7382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7382_high_7
NF7382_high_7
[»] chr8 (9 HSPs)
chr8 (1-285)||(454899-455176)
chr8 (150-228)||(466750-466828)
chr8 (150-210)||(474235-474295)
chr8 (11-58)||(474091-474138)
chr8 (150-235)||(446016-446101)
chr8 (3-51)||(445817-445865)
chr8 (3-58)||(479557-479612)
chr8 (150-228)||(479701-479779)
chr8 (11-58)||(466625-466672)
[»] chr2 (2 HSPs)
chr2 (167-227)||(27493542-27493602)
chr2 (10-58)||(27493757-27493805)


Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 454899 - 455176
Alignment:
Q  1 tttaccgtcatgcttttgcaaccattcttcttgctcccattgcttatttatctgggtatattttactatcaccaccttatctatcctttcctcttatcta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  454899 tttaccgtcatgcttttgcaaccattcttcttgctcccattgcttatttatctgggtatattttactatcaccaccttatctatcctttcctcttatcta 454998  T
Q  101 aagtctattaagtaatttattgtttctattccnnnnnnncacaggagaagagaaactctcgctcttattccttaaatttaacaagtttttcctggatttt 200  Q
    |||| |||||||||||||||||||||||||||       |||||     |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  454999 aagtttattaagtaatttattgtttctattcctttttttcacag-----gagaaactctcgctcttattccttaaatttaacaagtttttcctggatttt 455093  T
Q  201 catgacctcactaattgggtttgtttcctttttctttttcttctcaatatgaatatggtgcttatcgttatgatgtgaaattgat 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  455094 catgacctcactaattgggtttgtttcctttttctttttcttctcaatatga--atggtgcttatcgttatgatgtgaaattgat 455176  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 150 - 228
Target Start/End: Original strand, 466750 - 466828
Alignment:
Q  150 gagaaactctcgctcttattccttaaatttaacaagtttttcctggattttcatgacctcactaattgggtttgtttcc 228  Q
    |||||||||| |||| |||||||| |||||||  |||||||||| ||||||||||||||||||||||||||||||||||    
T  466750 gagaaactctggctcatattccttgaatttaaggagtttttccttgattttcatgacctcactaattgggtttgtttcc 466828  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 474235 - 474295
Alignment:
Q  150 gagaaactctcgctcttattccttaaatttaacaagtttttcctggattttcatgacctca 210  Q
    ||||||||||  ||||||||||||||||||||  |||||||||| ||||||||||||||||    
T  474235 gagaaactctgcctcttattccttaaatttaaggagtttttccttgattttcatgacctca 474295  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 474091 - 474138
Alignment:
Q  11 tgcttttgcaaccattcttcttgctcccattgcttatttatctgggta 58  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||    
T  474091 tgcttttgcaaccatttttcttgctcccattgcttatttctctgggta 474138  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 235
Target Start/End: Original strand, 446016 - 446101
Alignment:
Q  150 gagaaactctcgctcttattccttaaatttaacaagtttttcctggattttcatgacctcactaattgggtttgtttcctttttct 235  Q
    ||||||||||  ||| || |||||||| ||||  |||||||||||||| |||||||| ||||||||| ||||||||| | ||||||    
T  446016 gagaaactctgcctcctactccttaaacttaaggagtttttcctggatattcatgacttcactaattaggtttgttttcattttct 446101  T

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Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 445817 - 445865
Alignment:
Q  3 taccgtcatgcttttgcaaccattcttcttgctcccattgcttatttat 51  Q
    |||||| ||||||||||||||||| |||||||||| |||||||||||||    
T  445817 taccgtaatgcttttgcaaccatttttcttgctccaattgcttatttat 445865  T

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Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 479557 - 479612
Alignment:
Q  3 taccgtcatgcttttgcaaccattcttcttgctcccattgcttatttatctgggta 58  Q
    |||||||||||| ||||||||||||||||||||||  |||||||||| || |||||    
T  479557 taccgtcatgctattgcaaccattcttcttgctcctgttgcttatttttccgggta 479612  T

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Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 228
Target Start/End: Original strand, 479701 - 479779
Alignment:
Q  150 gagaaactctcgctcttattccttaaatttaacaagtttttcctggattttcatgacctcactaattgggtttgtttcc 228  Q
    |||||| ||| |||||||||||||||||||||  |||||||| | | | ||| | ||||||||||||||||| ||||||    
T  479701 gagaaattctggctcttattccttaaatttaaggagtttttctttgttattcttaacctcactaattgggttagtttcc 479779  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 466625 - 466672
Alignment:
Q  11 tgcttttgcaaccattcttcttgctcccattgcttatttatctgggta 58  Q
    |||||||||||||||| ||||||||||| | ||||||||||| |||||    
T  466625 tgcttttgcaaccattgttcttgctcccctcgcttatttatcagggta 466672  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 227
Target Start/End: Complemental strand, 27493602 - 27493542
Alignment:
Q  167 attccttaaatttaacaagtttttcctggattttcatgacctcactaattgggtttgtttc 227  Q
    |||||||||||||||  |||||||| ||||| ||||| || |||||| |||||||||||||    
T  27493602 attccttaaatttaaagagtttttcttggatattcatcacttcactagttgggtttgtttc 27493542  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 27493805 - 27493757
Alignment:
Q  10 atgcttttgcaaccattcttcttgctcccattgcttatttatctgggta 58  Q
    ||||||||||||||||| ||||||||||  ||||||||||||| |||||    
T  27493805 atgcttttgcaaccatttttcttgctcctgttgcttatttatcagggta 27493757  T

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