View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7382_low_1 (Length: 627)
Name: NF7382_low_1
Description: NF7382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7382_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 560; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 1 - 615
Target Start/End: Original strand, 27313084 - 27313697
Alignment:
| Q |
1 |
catcaatctggagaaatgcaaatattatgtcagtaattgtaatgatgagtcgctgataaaactaaataattatttgtgtgtatgcatcacctggatgatt |
100 |
Q |
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| T |
27313084 |
catcaatctggagaaatgcaaataccatgtcagtaattgtaatgaagagtcgctgataaaactaaataattatttttgtgtatgcatcacctggatgatt |
27313183 |
T |
|
| Q |
101 |
agattgtctttacaaggccctatgaatttcgtcgcattaacaaggtaacggcgtccttttggaatcaatagaacagattttggtgtagaacaagcaactc |
200 |
Q |
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| T |
27313184 |
agattgtctttacaaggccctatgaatttcgtcgcattaacaaggtaacggcgtccttttggaatcaatagaacagattttggtgtagaacaagcaactc |
27313283 |
T |
|
| Q |
201 |
cccatgctttttgaagagcctataaataaagaattgatcagtatcatcagtttcatatgttcaacaacctcgaatgtgtaaagtgcatgttgaacataga |
300 |
Q |
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| T |
27313284 |
cccatgctttttgaagagcctataaataa-gaattgatcagtatcatcagtttcatatgttcaacaacctcgaatgtgtaaagtgcatgttgaacataga |
27313382 |
T |
|
| Q |
301 |
aaaataggtctaatttgcaaataatgaaagaactttacctcagtatcatcagtttctccatttcctgcagcaccaaagctatcaatattcacaagaactt |
400 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27313383 |
aaaataggactaatttgcaaataatgaaagaactttacctcagtatcatcagtttctccatttcctgcagcaccaaagctatcaatattcacaagaactt |
27313482 |
T |
|
| Q |
401 |
ttccgccgcgttcacttgtccatgaaggtatgtcagaaagttcttctacctcataatcttcctctgtgtcgaggttgttgagttcttctagcatgccaaa |
500 |
Q |
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| T |
27313483 |
ttccgccgcgttcacttgtccatgaaggtatgtcagaaagttcttctacctcataatcttcctctgtgtcgaggttgttgagttcttctagcatgccaaa |
27313582 |
T |
|
| Q |
501 |
gttgttgtcgcacatcatgcttcctgaaactccattcgccactataagcaaaccgagtaaagaaaccaagaagaatttgtccatannnnnnnnncctgtt |
600 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
27313583 |
gttgttgtcgcacatcatgcttcctgaaactccattcgccactataagcaaaccgagtaaagaaaccaagaagaatttgtccatatttttttttcctgtt |
27313682 |
T |
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| Q |
601 |
tgttggctgtatatt |
615 |
Q |
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||||||||||||||| |
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| T |
27313683 |
tgttggctgtatatt |
27313697 |
T |
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