View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7382_low_3 (Length: 404)
Name: NF7382_low_3
Description: NF7382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7382_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 3 - 380
Target Start/End: Original strand, 15835777 - 15836148
Alignment:
| Q |
3 |
cgagtttggtggtggtgagtgggttatgggaccatgctagtttgagtctctcgacaagtgtttcagagggagtatcggggacaacatggaagaagaaatc |
102 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15835777 |
cgagtttgagggtggtgagtgggttatgggaccatgctagtttgagtctctcgacaagtgtttcagagggagtatcggggacaacatggaagaagaaatc |
15835876 |
T |
|
| Q |
103 |
aaggcatgggttaccggtggagagaaatgtcggtgacatgttctcggtgaaccccatcagtgggtttcggttacttggcagagaattgaagttgtccacc |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
15835877 |
aaggcatgggttaccggtggagagaaatgtcggtgacatgttctcggtgaaccccatcagtgggtttcggttacttgccagagaattgaagttgtccacc |
15835976 |
T |
|
| Q |
203 |
atttgatcgacaaagacattgttagtggttgtggtggtttcagcggtggtttgagcggttgggatggtggtagggttagggtttgatttgagagtataga |
302 |
Q |
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| T |
15835977 |
atttgatcgacaaagacattgttagtggttgtggtggtttcagcgg----ttgtgatggtggtagggt--tagggttggggtttgatttgagagtataga |
15836070 |
T |
|
| Q |
303 |
tctcaggtgggccaaggagagtgacggcgggcattgttgttgagaaataaagttgagaggagaaagaggaaattgaga |
380 |
Q |
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| T |
15836071 |
tctcaggtgggccaaggagagtgacggcgggcattgttgttgagaaataaagttgagaggagaaagaggaaattgaga |
15836148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 155; Significance: 4e-82; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 3 - 348
Target Start/End: Original strand, 19796539 - 19796893
Alignment:
| Q |
3 |
cgagtttggtggtggtgagtgggttatgggaccatgctagtttgagtctctcgacaagtgtttcagagggagtatcggggacaacatggaagaagaaatc |
102 |
Q |
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| T |
19796539 |
cgagtttgagggcggtgagagggttttgggaccaagcaagtttgagtctctcaacgagtgtttcagaaggagtatcaggaacaacatggaagaagaaatc |
19796638 |
T |
|
| Q |
103 |
aaggcatgggttaccggtggagagaaatgtcggtgacatgttctcggtgaaccccatcagtgggtttcggttacttggcagagaattgaagttgtccacc |
202 |
Q |
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||||| |||||||||||||||||||| || |||||||||||||| || ||||||||| ||||||||||||| || ||||||||||||||| | ||| |
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| T |
19796639 |
gaggcaagggttaccggtggagagaaacgttggtgacatgttctctgtcaaccccatcggtgggtttcggtttctaccaagagaattgaagttggcgacc |
19796738 |
T |
|
| Q |
203 |
atttgatcgacaaagacattgttagtggttgt------------ggtggtttcagcggtggtttgagcggttgggatggtggtagggttagggtttgatt |
290 |
Q |
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|||||||||| ||||||| |||||||||||| |||||||||| |||||||||||||| | | |||||||||||||||||||||||| |
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| T |
19796739 |
atttgatcgaggaagacatcgttagtggttgtggtggtggtgacggtggtttca---gtggtttgagcggtggtggtggtggtagggttagggtttgatt |
19796835 |
T |
|
| Q |
291 |
tgagagtatagatctcaggtgggccaaggagagtgacggcgggcattgttgttgagaa |
348 |
Q |
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|||| | |||||||||||||||||||| ||||| |||||||| ||||||||||||||| |
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| T |
19796836 |
tgagtgaatagatctcaggtgggccaacgagagcgacggcggccattgttgttgagaa |
19796893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 13 - 144
Target Start/End: Original strand, 47713601 - 47713732
Alignment:
| Q |
13 |
ggtggtgagtgggttatgggaccatgctagtttgagtctctcgacaagtgtttcagagggagtatcggggacaacatggaagaagaaatcaaggcatggg |
112 |
Q |
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||||||||||||||||| ||||||||||| || |||| || || ||||||| |||||| ||||||||||||||||||||||| ||||| |||||| |
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| T |
47713601 |
ggtggtgagtgggttataggaccatgctaattgaagtcgtcggaggagagtttcagggggagtgtcggggacaacatggaagaagaagtcaagacatggg |
47713700 |
T |
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| Q |
113 |
ttaccggtggagagaaatgtcggtgacatgtt |
144 |
Q |
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|| || || | |||| |||| ||||||||||| |
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| T |
47713701 |
ttgccagtagtgagatatgttggtgacatgtt |
47713732 |
T |
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