View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7382_low_4 (Length: 403)
Name: NF7382_low_4
Description: NF7382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7382_low_4 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 18 - 403
Target Start/End: Original strand, 6385829 - 6386211
Alignment:
| Q |
18 |
tatttccctctctccttttagttcttcataaacatgattcattcttgcatattttgcagcctttgattagtttaagaaaattttcaactgccaatgnnnn |
117 |
Q |
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| T |
6385829 |
tatttccctctctccttttagttcttcataaacatgattcattcttgcatattttgcagcctttgattagtttaagaaaattttcaactgccaatgtttt |
6385928 |
T |
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| Q |
118 |
nnnnagaaaacagatcaagttactttttactagcaatttttgaggttcataacatggtaatttgtttgtttatgctttactttttccacaaactagcacg |
217 |
Q |
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| T |
6385929 |
ttttagaaaacaga---agtcactttttacaagcaatttttgaggttcataacatggtaatttgtttgtttatgctttactttttccacaaactagcacg |
6386025 |
T |
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| Q |
218 |
tacaaaagacgtgtgttgttcctgggagcaagtcttctatgaacacaattctaaatcaaaatatttacatatactatcatgatgttagaatgttcaaata |
317 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| |
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| T |
6386026 |
tacaaaagacatgtgttgttcctgggagcaagtcttctatgaacacaattctaaatcaaaatatttagatatactaacatgatgttagaatgtttaaata |
6386125 |
T |
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| Q |
318 |
ttttgatttgaggttgtatctatagaagacttgttcagtacacatatatgaaaagattgaaaaacttctagccaagtagaacacca |
403 |
Q |
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| T |
6386126 |
ttttgatttgaggttgtatctatagaagacttgttcagtacacatatatgaaaagattgaaaaacttctagccaagtagaatacca |
6386211 |
T |
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