View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7383_high_13 (Length: 245)
Name: NF7383_high_13
Description: NF7383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7383_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 15090884 - 15091117
Alignment:
| Q |
1 |
cttgtcacgccaatttgaagtgttgatagtgtgtgttttgtgttgtccaacattaaacattccacgtgcaccaccagtggattttcctccactgtttcct |
100 |
Q |
| |
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|||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
15090884 |
cttgtcacgccaatttccagtgttggcagtgtgtgttttgttttgtccaacattaaacattccacgtgcaccacctgtggattttcctccactgtttcct |
15090983 |
T |
|
| Q |
101 |
ccaggaaaacgatcacgattgtctttgttattacgaaccataacccaatcgctatttctaccttcattctgtgtgacaactttgttaccaaaaacgggtc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
15090984 |
ccaggaaaacgatcacgattgtctttgttattacgaaccataacccaatcgccatttctaccttcattctgtgtgacaaccttgtaaccaaaaacgggtc |
15091083 |
T |
|
| Q |
201 |
gagatagtgaaccatgtgatcttcgtgatgtcca |
234 |
Q |
| |
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||||||||||||||||||| ||||| |||||||| |
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| T |
15091084 |
gagatagtgaaccatgtgaccttcgcgatgtcca |
15091117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 35075029 - 35074796
Alignment:
| Q |
1 |
cttgtcacgccaatttgaagtgttgatagtgtgtgttttgtgttgtccaacattaaacattccacgtgcaccaccagtggattttcctccactgtttcct |
100 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||| ||| ||||||||| |||||||||| |
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| T |
35075029 |
cttgtcacgccaatttccagtgttggcagtgtgtgttttgttttgtcgaacattaaacattccacgtgcaccacctgtgaattttcctcaactgtttcct |
35074930 |
T |
|
| Q |
101 |
ccaggaaaacgatcacgattgtctttgttattacgaaccataacccaatcgctatttctaccttcattctgtgtgacaactttgttaccaaaaacgggtc |
200 |
Q |
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||| ||||||||||| ||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
35074929 |
ccaagaaaacgatcatgattgtctttgttattatgaaccataacccgatcgccatttctaccttcattctgtgtgacaaccttgttaccaaaaatgggtc |
35074830 |
T |
|
| Q |
201 |
gagatagtgaaccatgtgatcttcgtgatgtcca |
234 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||| |
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| T |
35074829 |
gagatagtgaaccatgtgaccttcgcgatgtcca |
35074796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 43010796 - 43010593
Alignment:
| Q |
1 |
cttgtcacgccaatttgaagtgttgatagtgtgtgttttgtgttgtccaacattaaacattccacgtgcaccaccagtggattttcctccactgtttcct |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| | || |||||||||||||||||| |
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| T |
43010796 |
cttgtcacgccaatttgcagtgttgatagtgtgtgttttgttttgtccaacattaaacattccacgtgcacgat---tg---tttcctccactgtttcct |
43010703 |
T |
|
| Q |
101 |
ccaggaaaacgatcacgattgtctttgttattacgaaccataacccaatcgctatttctaccttcattctgtgtgacaactttgttaccaaaaacgggtc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43010702 |
ccaggaaaacgatcacgattgtctttgttattacgaatcataacccaatcgctatttctaccttcattctgtgtgacaactttgttaccaaaaacgggtc |
43010603 |
T |
|
| Q |
201 |
gagatagtga |
210 |
Q |
| |
|
|||||||||| |
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|
| T |
43010602 |
gagatagtga |
43010593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 43013093 - 43012890
Alignment:
| Q |
1 |
cttgtcacgccaatttgaagtgttgatagtgtgtgttttgtgttgtccaacattaaacattccacgtgcaccaccagtggattttcctccactgtttcct |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||| | || |||||||||||||||||| |
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|
| T |
43013093 |
cttgtcacgccaatttgcagtgttgatagtgtgtgttttgttttgtccaacattaaacatttcacgtgcacgat---tg---tttcctccactgtttcct |
43013000 |
T |
|
| Q |
101 |
ccaggaaaacgatcacgattgtctttgttattacgaaccataacccaatcgctatttctaccttcattctgtgtgacaactttgttaccaaaaacgggtc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43012999 |
ccaggaaaacgatcacgattgtctttgttattacgaatcataacccaatcgctatttctaccttcattctgtgtgacaactttgttaccaaaaacgggtc |
43012900 |
T |
|
| Q |
201 |
gagatagtga |
210 |
Q |
| |
|
|||||||||| |
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|
| T |
43012899 |
gagatagtga |
43012890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 25203701 - 25203934
Alignment:
| Q |
1 |
cttgtcacgccaatttgaagtgttgatagtgtgtgttttgtgttgtccaacattaaacattccacgtgcaccaccagtggattttcctccactgtttcct |
100 |
Q |
| |
|
|||||||||||||||| | ||||| ||||||||||||||| ||||| |||||||||||||||||| |||||| ||||| ||||||||||||||||| |
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|
| T |
25203701 |
cttgtcacgccaatttccaatgttggtagtgtgtgttttgttttgtctaacattaaacattccacgcaaaccacctatggatcttcctccactgtttcct |
25203800 |
T |
|
| Q |
101 |
ccaggaaaacgatcacgattgtctttgttattacgaaccataacccaatcgctatttctaccttcattctgtgtgacaactttgttaccaaaaacgggtc |
200 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||| |||||||||||||| |||| |
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|
| T |
25203801 |
ccaggaaaatgatcacgattgtctttgttattacgaaccataacccaatcgccctttctaccttcattttgtgtaacaaccttgttaccaaaaacaggtc |
25203900 |
T |
|
| Q |
201 |
gagatagtgaaccatgtgatcttcgtgatgtcca |
234 |
Q |
| |
|
||||||||||||||||||| |||| |||||||| |
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| T |
25203901 |
gagatagtgaaccatgtgaccttctcgatgtcca |
25203934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 25676572 - 25676775
Alignment:
| Q |
1 |
cttgtcacgccaatttgaagtgttgatagtgtgtgttttgtgttgtccaacattaaacattccacgtgcaccaccagtggattttcctccactgtttcct |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| | || |||||||||||||||||| |
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|
| T |
25676572 |
cttgtcacgccaatttgcagtgttgatagtgtgtgttttgttttgtccaacattaaacattccacgtgcacgat---tg---tttcctccactgtttcct |
25676665 |
T |
|
| Q |
101 |
ccaggaaaacgatcacgattgtctttgttattacgaaccataacccaatcgctatttctaccttcattctgtgtgacaactttgttaccaaaaacgggtc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25676666 |
ccaggaaaacgatcacgattgtctttgttattacgaatcataacccaatcgctatttctaccttcattctgtgtgacaactttgttaccaaaaacgggtc |
25676765 |
T |
|
| Q |
201 |
gagatagtga |
210 |
Q |
| |
|
|||||||||| |
|
|
| T |
25676766 |
gagatagtga |
25676775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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